Wall clock time and date at job start Mon Mar 30 2020 00:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39684 * 120.00199 * 2 1 4 4 C 1.39017 * 120.01256 * 0.02562 * 3 2 1 5 5 C 1.38177 * 120.17856 * 179.97438 * 4 3 2 6 6 C 1.38072 * 120.20461 * 359.97438 * 5 4 3 7 7 C 1.39401 * 120.02123 * 0.27920 * 6 5 4 8 8 C 1.48339 * 120.08695 * 179.69882 * 7 6 5 9 9 C 1.39434 * 120.04738 * 179.71979 * 8 7 6 10 10 C 1.37834 * 119.94276 * 179.76968 * 9 8 7 11 11 C 1.39003 * 120.05225 * 0.53322 * 10 9 8 12 12 O 1.35695 * 119.94774 * 179.72347 * 11 10 9 13 13 C 1.34816 * 117.00045 * 174.43540 * 12 11 10 14 14 H 1.07999 * 120.00200 * 5.04805 * 13 12 11 15 15 C 1.38649 * 120.00086 * 185.05654 * 13 12 11 16 16 N 1.31559 * 120.00366 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99880 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47379 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47180 * 120.00078 * 17 15 13 20 20 H 1.48506 * 109.47215 * 239.99626 * 17 15 13 21 21 C 1.38997 * 120.10440 * 359.70333 * 11 10 9 22 22 C 1.37838 * 120.05151 * 0.03695 * 21 11 10 23 23 C 1.38671 * 120.01713 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47094 * 60.00490 * 1 2 3 25 25 H 1.09008 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46915 * 299.99655 * 1 2 3 27 27 H 0.97007 * 120.00072 * 180.02562 * 2 1 3 28 28 H 1.08005 * 119.91121 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.89471 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.99283 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.03064 * 0.03135 * 9 8 7 32 32 H 1.07997 * 119.97493 * 180.23704 * 10 9 8 33 33 H 0.96994 * 120.00254 * 180.02562 * 16 15 13 34 34 H 1.07997 * 119.97732 * 180.02562 * 21 11 10 35 35 H 1.08002 * 120.02712 * 180.02562 * 22 21 11 36 36 H 1.08009 * 120.09745 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4687 2.4138 0.0005 5 6 2.1561 3.6124 0.0011 6 6 3.5368 3.6213 0.0016 7 6 4.2420 2.4188 -0.0043 8 6 5.7254 2.4267 -0.0104 9 6 6.4299 1.2234 -0.0104 10 6 7.8082 1.2333 -0.0210 11 6 8.4958 2.4413 -0.0204 12 8 9.8527 2.4485 -0.0251 13 6 10.4580 3.6475 -0.1408 14 1 9.8683 4.5523 -0.1423 15 6 11.8377 3.7192 -0.2580 16 7 12.5562 2.6171 -0.2559 17 14 12.6763 5.3806 -0.4190 18 1 11.6528 6.4562 -0.3953 19 1 13.6206 5.5701 0.7114 20 1 13.4225 5.4362 -1.7018 21 6 7.7955 3.6420 -0.0155 22 6 6.4172 3.6372 -0.0103 23 6 3.5502 1.2100 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8401 -0.0004 28 1 0.3886 2.4124 0.0005 29 1 1.6117 4.5452 0.0011 30 1 4.0707 4.5601 0.0024 31 1 5.8962 0.2846 -0.0064 32 1 8.3544 0.3016 -0.0248 33 1 13.5214 2.6673 -0.3375 34 1 8.3318 4.5794 -0.0155 35 1 5.8735 4.5704 -0.0069 36 1 4.0920 0.2757 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:55 Heat of formation + Delta-G solvation = 6.074761 kcal Electronic energy + Delta-G solvation = -18760.612739 eV Core-core repulsion = 15788.336827 eV Total energy + Delta-G solvation = -2972.275912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00044 -40.13167 -38.23478 -36.18602 -34.34548 -32.65629 -32.08083 -30.72628 -28.96320 -27.31022 -26.64070 -24.23477 -23.68350 -22.45597 -21.25606 -19.85084 -19.03545 -18.24294 -17.20251 -16.63355 -16.31153 -16.15380 -15.72442 -15.57166 -15.08719 -15.05252 -14.68269 -14.64076 -14.37933 -13.84761 -13.75812 -13.53785 -13.08874 -12.97055 -12.65523 -12.57203 -12.55226 -12.10211 -12.03960 -11.70439 -11.13425 -11.07367 -10.78163 -10.00610 -9.85461 -8.63724 -8.49224 -8.20105 -6.16090 -0.00068 0.57530 0.76336 1.18578 1.35803 1.45934 1.54292 2.16970 2.66417 2.75790 3.04544 3.34346 3.46286 3.86409 3.95993 4.07880 4.23873 4.38413 4.44327 4.48503 4.54537 4.66018 4.72631 4.74959 4.88763 4.97179 4.97968 5.10671 5.19783 5.26167 5.42949 5.52917 5.53873 5.66475 5.72529 5.95992 6.00370 6.05593 6.16842 6.52813 6.89854 6.95344 7.74191 8.73860 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.045945 B = 0.003362 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.279488 B = 8326.035741 C = 8913.922219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.756 5.756 3 C 0.210 3.790 4 C -0.213 4.213 5 C -0.069 4.069 6 C -0.194 4.194 7 C 0.013 3.987 8 C -0.137 4.137 9 C -0.054 4.054 10 C -0.203 4.203 11 C 0.120 3.880 12 O -0.226 6.226 13 C -0.414 4.414 14 H 0.104 0.896 15 C -0.022 4.022 16 N -0.919 5.919 17 Si 1.020 2.980 18 H -0.250 1.250 19 H -0.268 1.268 20 H -0.268 1.268 21 C -0.241 4.241 22 C -0.054 4.054 23 C -0.211 4.211 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.405 0.595 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.119 0.881 33 H 0.274 0.726 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.262 -0.718 0.236 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.386 5.386 3 C 0.106 3.894 4 C -0.236 4.236 5 C -0.088 4.088 6 C -0.214 4.214 7 C 0.012 3.988 8 C -0.138 4.138 9 C -0.072 4.072 10 C -0.222 4.222 11 C 0.069 3.931 12 O -0.132 6.132 13 C -0.490 4.490 14 H 0.121 0.879 15 C -0.220 4.220 16 N -0.557 5.557 17 Si 0.839 3.161 18 H -0.174 1.174 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.260 4.260 22 C -0.072 4.072 23 C -0.234 4.234 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.240 0.760 28 H 0.155 0.845 29 H 0.162 0.838 30 H 0.142 0.858 31 H 0.166 0.834 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.124 -0.954 0.242 23.145 hybrid contribution 1.205 0.113 -0.049 1.211 sum -21.919 -0.841 0.192 21.936 Atomic orbital electron populations 1.21658 0.78878 1.03703 1.01100 1.44557 1.06570 1.04805 1.82626 1.17827 0.90623 0.87489 0.93437 1.20871 1.00294 0.90963 1.11455 1.21068 0.93383 0.98405 0.95931 1.21158 0.94839 0.97217 1.08158 1.18525 0.90433 0.93767 0.96083 1.18700 0.92387 0.93071 1.09639 1.21065 0.91659 0.98468 0.95971 1.20394 0.94647 0.95509 1.11632 1.20010 0.84089 0.95263 0.93730 1.83927 1.15050 1.33614 1.80654 1.21909 0.91134 0.83529 1.52457 0.87875 1.26617 0.95761 1.03866 0.95723 1.70186 1.07094 1.30034 1.48358 0.84513 0.78213 0.74834 0.78550 1.17362 1.19281 1.19326 1.21213 0.95326 0.97583 1.11912 1.21166 0.92283 0.98358 0.95413 1.20712 0.92571 0.97901 1.12173 0.92921 0.88868 0.92899 0.76040 0.84513 0.83811 0.85762 0.83411 0.86298 0.91729 0.85758 0.83847 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 9.94 127.77 1.27 2.23 16 2 N -0.76 -12.33 5.89 -360.91 -2.13 -14.46 16 3 C 0.21 4.70 6.65 38.18 0.25 4.96 16 4 C -0.21 -4.44 9.31 22.44 0.21 -4.23 16 5 C -0.07 -1.50 10.03 22.22 0.22 -1.28 16 6 C -0.19 -5.11 9.42 22.51 0.21 -4.90 16 7 C 0.01 0.38 5.87 -20.06 -0.12 0.26 16 8 C -0.14 -4.83 5.88 -20.01 -0.12 -4.95 16 9 C -0.05 -1.94 9.42 22.46 0.21 -1.73 16 10 C -0.20 -8.86 9.98 22.36 0.22 -8.63 16 11 C 0.12 6.09 6.65 22.64 0.15 6.24 16 12 O -0.23 -13.71 9.75 -21.99 -0.21 -13.93 16 13 C -0.41 -24.19 9.48 67.92 0.64 -23.55 16 14 H 0.10 5.52 5.19 -2.91 -0.02 5.51 16 15 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 16 N -0.92 -56.42 13.67 21.61 0.30 -56.13 16 17 Si 1.02 42.80 29.55 68.60 2.03 44.83 16 18 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 C -0.24 -10.77 9.15 22.36 0.20 -10.57 16 22 C -0.05 -2.01 9.42 22.46 0.21 -1.80 16 23 C -0.21 -5.55 9.27 22.62 0.21 -5.34 16 24 H 0.05 0.55 7.95 -2.39 -0.02 0.53 16 25 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.05 0.55 7.94 -2.39 -0.02 0.53 16 27 H 0.41 5.54 8.84 -92.70 -0.82 4.72 16 28 H 0.14 2.17 6.72 -2.91 -0.02 2.16 16 29 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.12 3.03 6.19 -2.91 -0.02 3.01 16 31 H 0.15 4.25 6.20 -2.91 -0.02 4.23 16 32 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.12 5.55 5.62 -2.91 -0.02 5.54 16 35 H 0.14 4.33 6.19 -2.91 -0.02 4.32 16 36 H 0.13 3.02 6.20 -2.91 -0.02 3.00 16 Total: -1.00 -71.57 305.75 4.54 -67.03 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.30 Total: 26.73 kcal Atomic # 6 Polarization: -58.32 SS G_CDS: 4.25 Total: -54.07 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -1.83 Total: -70.59 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.21 Total: -13.93 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.57 4.54 -67.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.108 kcal (2) G-P(sol) polarization free energy of solvation -71.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds