Wall clock time and date at job start Mon Mar 30 2020 00:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47208 * 2 1 4 4 C 1.34871 * 119.49727 * 90.00381 * 3 2 1 5 5 C 1.37967 * 120.43501 * 179.97438 * 4 3 2 6 6 C 1.47854 * 120.24812 * 179.97438 * 5 4 3 7 7 C 1.40027 * 119.88691 * 294.72949 * 6 5 4 8 8 C 1.36193 * 120.11194 * 179.71610 * 7 6 5 9 9 C 1.40964 * 119.88447 * 0.55448 * 8 7 6 10 10 C 1.40977 * 120.11027 * 179.69809 * 9 8 7 11 11 H 1.08002 * 120.00223 * 155.01504 * 10 9 8 12 12 C 1.39933 * 120.00407 * 335.01500 * 10 9 8 13 13 N 1.30845 * 119.99603 * 342.10710 * 12 10 9 14 14 Si 1.86800 * 120.00332 * 162.10756 * 12 10 9 15 15 H 1.48495 * 109.47035 * 94.65200 * 14 12 10 16 16 H 1.48497 * 109.46844 * 214.64954 * 14 12 10 17 17 H 1.48502 * 109.46920 * 334.65207 * 14 12 10 18 18 C 1.40957 * 119.77792 * 359.71519 * 9 8 7 19 19 C 1.36193 * 119.88463 * 0.02562 * 18 9 8 20 20 C 1.41437 * 119.50605 * 0.02562 * 5 4 3 21 21 C 1.36046 * 119.05248 * 359.97438 * 20 5 4 22 22 C 1.34544 * 119.50094 * 269.73266 * 3 2 1 23 23 O 1.21999 * 119.76068 * 359.97438 * 22 3 2 24 24 H 1.09003 * 109.47066 * 299.99672 * 1 2 3 25 25 H 1.08999 * 109.46932 * 59.99682 * 1 2 3 26 26 H 1.09003 * 109.47128 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46932 * 120.00318 * 2 1 3 28 28 H 1.08998 * 109.46484 * 239.99951 * 2 1 3 29 29 H 1.07994 * 119.77927 * 359.97267 * 4 3 2 30 30 H 1.07998 * 119.93892 * 359.97218 * 7 6 5 31 31 H 1.08004 * 120.05848 * 180.27495 * 8 7 6 32 32 H 0.97005 * 120.00153 * 179.97438 * 13 12 10 33 33 H 1.07999 * 120.05868 * 179.97438 * 18 9 8 34 34 H 1.07997 * 119.94510 * 180.02562 * 19 18 9 35 35 H 1.07997 * 120.47234 * 180.02562 * 20 5 4 36 36 H 1.08007 * 120.23800 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2398 2.0073 1.1739 5 6 2.7002 3.3077 1.1965 6 6 2.9410 3.9902 2.4857 7 6 1.8672 4.2629 3.3421 8 6 2.0845 4.8863 4.5334 9 6 3.3916 5.2675 4.8984 10 6 3.6212 5.9187 6.1275 11 1 4.5908 5.8562 6.5990 12 6 2.5927 6.6461 6.7368 13 7 1.5529 7.0208 6.0365 14 14 2.7043 7.0823 8.5497 15 1 3.2827 8.4420 8.6970 16 1 1.3463 7.0544 9.1499 17 1 3.5725 6.0972 9.2433 18 6 4.4683 4.9958 4.0302 19 6 4.2412 4.3672 2.8435 20 6 2.9390 3.9834 -0.0229 21 6 2.7087 3.3323 -1.1951 22 6 2.2444 2.0040 -1.1710 23 8 2.0416 1.4143 -2.2196 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 2.0555 1.4872 2.1023 30 1 0.8656 3.9747 3.0593 31 1 1.2563 5.0922 5.1952 32 1 0.8397 7.5248 6.4589 33 1 5.4715 5.2862 4.3051 34 1 5.0654 4.1581 2.1778 35 1 3.2998 5.0013 -0.0234 36 1 2.8842 3.8302 -2.1373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243836348.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:32 Heat of formation + Delta-G solvation = -7.673380 kcal Electronic energy + Delta-G solvation = -19235.782421 eV Core-core repulsion = 16262.910345 eV Total energy + Delta-G solvation = -2972.872076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.30638 -39.50372 -37.85580 -36.38786 -35.31725 -32.42458 -31.78418 -31.24188 -29.86446 -26.86831 -25.59427 -24.46037 -23.24008 -22.53737 -21.76286 -19.21160 -18.36883 -18.21668 -17.43283 -17.05961 -16.75744 -16.07565 -15.61294 -15.23474 -15.18771 -14.82857 -14.57365 -14.05883 -13.99544 -13.82238 -13.50974 -13.14616 -13.08587 -12.88058 -12.76318 -12.58007 -12.32115 -12.12891 -12.06656 -11.48250 -11.25966 -11.01243 -10.98300 -10.92636 -9.41089 -9.30941 -8.71478 -8.57381 -6.30035 -0.05672 0.69709 1.07479 1.26046 1.41002 1.50316 1.56123 1.75115 2.21836 2.65514 2.76584 3.66244 3.73198 3.84919 4.05813 4.13172 4.14753 4.32549 4.36711 4.43402 4.54396 4.59379 4.77380 4.87999 5.03846 5.15090 5.16574 5.18502 5.21787 5.35283 5.44167 5.49237 5.61611 5.76116 6.04485 6.12792 6.16075 6.26628 6.41338 6.72313 6.95481 7.00870 7.07097 8.31520 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035853 B = 0.003898 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.782956 B = 7181.178951 C = 7531.824290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 N -0.483 5.483 4 C 0.138 3.862 5 C -0.127 4.127 6 C -0.166 4.166 7 C -0.080 4.080 8 C -0.191 4.191 9 C 0.086 3.914 10 C -0.496 4.496 11 H 0.076 0.924 12 C 0.038 3.962 13 N -0.819 5.819 14 Si 0.978 3.022 15 H -0.264 1.264 16 H -0.266 1.266 17 H -0.258 1.258 18 C -0.243 4.243 19 C -0.068 4.068 20 C 0.008 3.992 21 C -0.268 4.268 22 C 0.497 3.503 23 O -0.607 6.607 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.099 0.901 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.187 0.813 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.289 0.711 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 -8.894 -4.203 9.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.041 4.041 3 N -0.191 5.191 4 C 0.010 3.990 5 C -0.132 4.132 6 C -0.168 4.168 7 C -0.099 4.099 8 C -0.211 4.211 9 C 0.083 3.917 10 C -0.525 4.525 11 H 0.094 0.906 12 C -0.177 4.177 13 N -0.445 5.445 14 Si 0.799 3.201 15 H -0.189 1.189 16 H -0.191 1.191 17 H -0.182 1.182 18 C -0.262 4.262 19 C -0.086 4.086 20 C -0.014 4.014 21 C -0.290 4.290 22 C 0.302 3.698 23 O -0.496 6.496 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.118 0.882 27 H 0.142 0.858 28 H 0.108 0.892 29 H 0.204 0.796 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.159 0.841 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.779 -9.191 -4.853 10.545 hybrid contribution 0.009 0.747 0.737 1.049 sum -1.770 -8.445 -4.116 9.560 Atomic orbital electron populations 1.22084 0.93528 1.04366 1.01986 1.22247 0.96488 0.79454 1.05957 1.45332 1.51981 1.15543 1.06208 1.22625 0.93814 0.92924 0.89593 1.18386 1.08318 0.93387 0.93080 1.17820 0.92848 1.11106 0.95052 1.20669 0.97132 0.98175 0.93885 1.20928 0.97328 1.04438 0.98360 1.18003 0.92279 0.89095 0.92297 1.19836 0.98895 1.28403 1.05381 0.90620 1.26721 0.93637 0.93280 1.04107 1.69881 1.08461 1.27196 1.38947 0.85249 0.78988 0.79285 0.76580 1.18918 1.19058 1.18201 1.20838 0.98012 1.10475 0.96891 1.20570 0.95606 0.96903 0.95522 1.21800 0.89087 0.99652 0.90838 1.22021 1.11991 0.94648 1.00313 1.17361 0.80756 0.88789 0.82871 1.90854 1.58568 1.68749 1.31405 0.91526 0.94230 0.88185 0.85771 0.89227 0.79649 0.87590 0.88309 0.90045 0.88627 0.86861 0.84081 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.24 71.98 0.74 -2.09 16 2 C 0.08 1.51 6.03 86.38 0.52 2.03 16 3 N -0.48 -12.56 2.56 -649.40 -1.66 -14.23 16 4 C 0.14 3.56 9.99 84.16 0.84 4.40 16 5 C -0.13 -3.92 5.30 -20.01 -0.11 -4.03 16 6 C -0.17 -6.27 5.35 -19.87 -0.11 -6.38 16 7 C -0.08 -3.34 9.66 22.23 0.21 -3.12 16 8 C -0.19 -9.35 8.62 22.46 0.19 -9.16 16 9 C 0.09 4.37 5.57 -21.27 -0.12 4.25 16 10 C -0.50 -25.60 9.02 23.35 0.21 -25.39 16 11 H 0.08 3.78 7.91 -2.91 -0.02 3.75 16 12 C 0.04 1.85 5.13 85.25 0.44 2.29 16 13 N -0.82 -41.11 10.98 21.83 0.24 -40.87 16 14 Si 0.98 36.46 29.60 68.60 2.03 38.49 16 15 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 16 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 17 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 18 C -0.24 -11.13 9.73 22.46 0.22 -10.91 16 19 C -0.07 -2.70 9.67 22.23 0.21 -2.48 16 20 C 0.01 0.24 9.81 22.55 0.22 0.46 16 21 C -0.27 -7.97 9.97 22.37 0.22 -7.75 16 22 C 0.50 16.02 7.40 84.89 0.63 16.65 16 23 O -0.61 -23.12 16.59 -5.31 -0.09 -23.21 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.12 1.54 8.00 -2.39 -0.02 1.52 16 28 H 0.09 1.92 7.36 -2.39 -0.02 1.90 16 29 H 0.19 3.81 8.02 -2.91 -0.02 3.78 16 30 H 0.11 3.93 8.06 -2.91 -0.02 3.90 16 31 H 0.10 5.12 6.18 -2.91 -0.02 5.10 16 32 H 0.29 13.08 8.30 -92.70 -0.77 12.31 16 33 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 34 H 0.11 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -61.94 313.01 5.93 -56.02 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 1.07 Total: 25.04 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 4.33 Total: -41.24 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -1.42 Total: -55.09 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.09 Total: -23.21 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -61.94 5.93 -56.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243836348.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.345 kcal (2) G-P(sol) polarization free energy of solvation -61.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds