Wall clock time and date at job start Mon Mar 30 2020 01:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47399 * 2 1 4 4 C 1.37636 * 119.95939 * 265.00055 * 3 2 1 5 5 C 1.39854 * 119.92276 * 180.02562 * 4 3 2 6 6 C 1.47575 * 120.07418 * 179.97438 * 5 4 3 7 7 N 1.33072 * 120.54981 * 223.81303 * 6 5 4 8 8 C 1.31892 * 120.02904 * 179.97438 * 7 6 5 9 9 C 1.39031 * 121.22635 * 0.02562 * 8 7 6 10 10 N 1.31513 * 121.14927 * 359.97161 * 9 8 7 11 11 C 1.34096 * 119.86070 * 0.02562 * 10 9 8 12 12 C 1.40701 * 120.58342 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99911 * 189.32594 * 12 11 10 14 14 C 1.40142 * 120.00013 * 9.32000 * 12 11 10 15 15 N 1.30701 * 119.99973 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99974 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47223 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46896 * 120.00368 * 16 14 12 19 19 H 1.48509 * 109.47125 * 240.00018 * 16 14 12 20 20 C 1.39898 * 119.85278 * 0.26805 * 5 4 3 21 21 C 1.37594 * 119.91862 * 359.44827 * 20 5 4 22 22 C 1.39223 * 119.96473 * 85.01429 * 3 2 1 23 23 N 1.39165 * 119.92488 * 0.02562 * 22 3 2 24 24 H 1.09009 * 109.47133 * 60.00393 * 1 2 3 25 25 H 1.09000 * 109.47401 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47407 * 300.00821 * 1 2 3 27 27 H 1.08997 * 109.47407 * 239.99179 * 2 1 3 28 28 H 1.09002 * 109.46391 * 119.99186 * 2 1 3 29 29 H 1.07997 * 120.03843 * 359.96700 * 4 3 2 30 30 H 1.07997 * 119.38460 * 179.97438 * 8 7 6 31 31 H 1.08004 * 119.42188 * 179.70544 * 9 8 7 32 32 H 0.96999 * 120.00226 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.04130 * 179.72571 * 20 5 4 34 34 H 1.07998 * 119.96062 * 180.27539 * 21 20 5 35 35 H 0.97000 * 120.00064 * 0.02562 * 23 22 3 36 36 H 0.97003 * 119.99908 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3595 2.0342 -1.1879 5 6 2.8261 3.3525 -1.1870 6 6 3.1784 4.0132 -2.4587 7 7 4.2894 4.7387 -2.5589 8 6 4.5946 5.3244 -3.7006 9 6 3.7735 5.2013 -4.8158 10 7 2.6645 4.4959 -4.7696 11 6 2.3111 3.8813 -3.6313 12 6 1.1283 3.1223 -3.5651 13 1 0.7735 2.7574 -2.6125 14 6 0.4104 2.8399 -4.7351 15 7 0.8400 3.2811 -5.8879 16 14 -1.1603 1.8327 -4.6469 17 1 -1.4285 1.4564 -3.2357 18 1 -2.2942 2.6376 -5.1682 19 1 -1.0072 0.6040 -5.4670 20 6 2.9642 4.0415 0.0227 21 6 2.6298 3.4243 1.2061 22 6 2.1653 2.1113 1.2016 23 7 1.8345 1.4878 2.4009 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 2.2568 1.4977 -2.1196 30 1 5.4986 5.9111 -3.7702 31 1 4.0490 5.6973 -5.7348 32 1 0.3434 3.0854 -6.6978 33 1 3.3285 5.0582 0.0274 34 1 2.7318 3.9571 2.1400 35 1 1.5119 0.5730 2.3991 36 1 1.9271 1.9678 3.2388 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244282208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:02 Heat of formation + Delta-G solvation = 31.516529 kcal Electronic energy + Delta-G solvation = -19986.169689 eV Core-core repulsion = 17047.289767 eV Total energy + Delta-G solvation = -2938.879923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.86429 -39.95883 -35.99775 -35.85894 -34.49749 -33.77749 -32.16963 -30.32029 -29.00407 -27.77494 -24.76045 -24.35962 -23.75160 -22.69974 -21.00057 -19.53231 -18.07753 -17.88416 -17.46724 -17.07289 -16.68693 -15.90476 -15.28126 -15.11428 -14.77143 -14.60459 -14.44991 -14.19899 -14.00296 -13.80800 -13.25122 -13.04796 -12.99263 -12.87895 -12.55771 -12.14125 -11.96930 -11.79960 -11.70419 -11.51317 -11.41890 -11.28788 -10.90269 -9.62861 -9.49923 -9.29638 -8.46144 -8.04503 -6.56477 0.31856 0.70085 0.87957 1.33802 1.37473 1.52645 1.54722 2.15991 2.75228 3.08915 3.18272 3.78432 3.86770 4.03399 4.11300 4.21944 4.36793 4.41776 4.55281 4.61946 4.73451 4.78123 4.81464 4.92899 5.08259 5.09562 5.11612 5.21932 5.24291 5.38490 5.49381 5.57706 5.74491 5.89112 6.06136 6.12152 6.18636 6.49562 6.73588 6.78306 7.16826 7.38436 7.94325 8.25917 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.008712 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.124311 B = 3213.063350 C = 4930.727557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C -0.169 4.169 4 C -0.062 4.062 5 C -0.070 4.070 6 C -0.022 4.022 7 N -0.436 5.436 8 C -0.135 4.135 9 C 0.071 3.929 10 N -0.499 5.499 11 C 0.186 3.814 12 C -0.413 4.413 13 H 0.107 0.893 14 C 0.021 3.979 15 N -0.744 5.744 16 Si 0.981 3.019 17 H -0.243 1.243 18 H -0.265 1.265 19 H -0.260 1.260 20 C -0.073 4.073 21 C -0.200 4.200 22 C 0.217 3.783 23 N -0.860 5.860 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.287 0.713 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.405 0.595 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 -7.202 11.926 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.174 4.174 4 C -0.082 4.082 5 C -0.073 4.073 6 C -0.172 4.172 7 N -0.148 5.148 8 C -0.293 4.293 9 C -0.097 4.097 10 N -0.216 5.216 11 C 0.060 3.940 12 C -0.443 4.443 13 H 0.124 0.876 14 C -0.203 4.203 15 N -0.364 5.364 16 Si 0.800 3.200 17 H -0.166 1.166 18 H -0.189 1.189 19 H -0.184 1.184 20 C -0.093 4.093 21 C -0.223 4.223 22 C 0.111 3.889 23 N -0.402 5.402 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.171 0.829 31 H 0.170 0.830 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.236 0.764 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.407 -7.130 11.590 14.027 hybrid contribution -0.151 0.232 -0.548 0.614 sum -3.558 -6.898 11.041 13.496 Atomic orbital electron populations 1.21769 0.94619 1.02293 1.01678 1.20342 0.96209 0.91187 1.03007 1.19430 1.08579 0.98249 0.91104 1.20947 0.96448 0.93251 0.97513 1.18121 1.04469 0.94263 0.90486 1.21822 0.94674 1.05225 0.95528 1.67845 1.15663 1.05221 1.26078 1.22849 1.04704 1.10607 0.91164 1.23799 0.92018 0.95102 0.98782 1.69478 1.15780 1.10643 1.25679 1.20899 0.93894 0.91748 0.87446 1.20105 1.03435 1.24815 0.95970 0.87557 1.27192 1.02489 0.96494 0.94088 1.70143 1.36083 1.30363 0.99842 0.85151 0.75874 0.78075 0.80898 1.16561 1.18941 1.18395 1.20934 0.97825 0.98915 0.91629 1.20571 1.08921 0.94758 0.98037 1.17560 0.93145 0.91309 0.86887 1.42237 1.75478 1.17718 1.04762 0.94515 0.90601 0.92135 0.91665 0.89484 0.87247 0.82885 0.82955 0.90228 0.87664 0.84034 0.76442 0.76371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.89 71.98 0.71 -2.62 16 2 C -0.07 -1.73 5.49 29.85 0.16 -1.56 16 3 C -0.17 -5.47 5.15 -19.77 -0.10 -5.57 16 4 C -0.06 -2.55 7.25 22.52 0.16 -2.39 16 5 C -0.07 -3.23 5.37 -20.02 -0.11 -3.34 16 6 C -0.02 -1.20 6.55 43.56 0.29 -0.92 16 7 N -0.44 -22.89 10.32 -178.78 -1.85 -24.73 16 8 C -0.14 -6.58 11.17 84.87 0.95 -5.64 16 9 C 0.07 3.56 11.17 84.93 0.95 4.51 16 10 N -0.50 -28.56 8.14 -184.15 -1.50 -30.06 16 11 C 0.19 10.59 6.65 41.54 0.28 10.86 16 12 C -0.41 -21.86 7.60 23.33 0.18 -21.68 16 13 H 0.11 5.32 5.48 -2.91 -0.02 5.30 16 14 C 0.02 1.05 5.49 85.32 0.47 1.52 16 15 N -0.74 -39.10 11.55 21.86 0.25 -38.85 16 16 Si 0.98 36.23 29.56 68.60 2.03 38.25 16 17 H -0.24 -8.47 7.11 99.48 0.71 -7.76 16 18 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 19 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 20 C -0.07 -2.94 9.67 22.52 0.22 -2.72 16 21 C -0.20 -6.32 9.87 22.37 0.22 -6.09 16 22 C 0.22 6.21 6.74 38.46 0.26 6.47 16 23 N -0.86 -15.82 8.97 -51.27 -0.46 -16.28 16 24 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.68 8.05 -2.39 -0.02 1.67 16 28 H 0.09 1.63 6.80 -2.39 -0.02 1.61 16 29 H 0.11 4.87 6.76 -2.91 -0.02 4.85 16 30 H 0.15 6.28 8.06 -2.91 -0.02 6.26 16 31 H 0.15 6.53 8.06 -2.91 -0.02 6.50 16 32 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 33 H 0.11 4.31 8.06 -2.91 -0.02 4.28 16 34 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.40 5.96 6.91 -92.71 -0.64 5.32 16 36 H 0.41 5.55 8.83 -92.71 -0.82 4.73 16 Total: -1.00 -68.31 305.70 2.78 -65.54 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.33 Total: 35.31 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 4.63 Total: -29.18 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -3.55 Total: -109.92 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.25 kcal Total: -68.31 2.78 -65.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244282208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.053 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds