Wall clock time and date at job start Mon Mar 30 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47328 * 2 1 4 4 C 1.37799 * 119.97508 * 265.00292 * 3 2 1 5 5 C 1.39490 * 119.94693 * 180.02562 * 4 3 2 6 6 C 1.48174 * 120.04804 * 179.97438 * 5 4 3 7 7 C 1.40118 * 119.99619 * 5.00511 * 6 5 4 8 8 N 1.32144 * 120.29086 * 180.27666 * 7 6 5 9 9 C 1.31911 * 120.29192 * 359.43510 * 8 7 6 10 10 C 1.40805 * 119.97939 * 0.58202 * 9 8 7 11 11 C 1.41315 * 120.14486 * 179.67703 * 10 9 8 12 12 H 1.07997 * 119.99575 * 353.75383 * 11 10 9 13 13 C 1.40031 * 120.00300 * 173.75592 * 11 10 9 14 14 N 1.30743 * 119.99813 * 6.29813 * 13 11 10 15 15 Si 1.86800 * 120.00212 * 186.30146 * 13 11 10 16 16 H 1.48497 * 109.47032 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47104 * 119.99853 * 15 13 11 18 18 H 1.48500 * 109.47118 * 240.00020 * 15 13 11 19 19 N 1.32570 * 119.99433 * 185.01759 * 6 5 4 20 20 C 1.39535 * 119.90240 * 0.25456 * 5 4 3 21 21 C 1.37764 * 119.94180 * 359.46615 * 20 5 4 22 22 C 1.39073 * 119.97288 * 85.02374 * 3 2 1 23 23 N 1.39402 * 119.94625 * 359.97438 * 22 3 2 24 24 H 1.09001 * 109.46662 * 300.00061 * 1 2 3 25 25 H 1.08994 * 109.46939 * 59.99461 * 1 2 3 26 26 H 1.08994 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47369 * 240.00173 * 2 1 3 28 28 H 1.09004 * 109.47440 * 119.99978 * 2 1 3 29 29 H 1.07998 * 120.02475 * 0.04345 * 4 3 2 30 30 H 1.07998 * 119.85203 * 359.97438 * 7 6 5 31 31 H 1.08009 * 120.00847 * 180.30132 * 9 8 7 32 32 H 0.97002 * 119.99870 * 179.97438 * 14 13 11 33 33 H 1.07992 * 120.02929 * 179.74590 * 20 5 4 34 34 H 1.08005 * 119.96996 * 180.29900 * 21 20 5 35 35 H 0.96997 * 120.00872 * 0.02562 * 23 22 3 36 36 H 0.97007 * 119.99707 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3599 2.0353 -1.1891 5 6 2.8254 3.3502 -1.1884 6 6 3.1788 4.0129 -2.4657 7 6 2.9472 3.3576 -3.6824 8 7 3.2652 3.9409 -4.8247 9 6 3.7931 5.1498 -4.8302 10 6 4.0313 5.8190 -3.6144 11 6 4.6031 7.1113 -3.6159 12 1 4.9510 7.5467 -4.5410 13 6 4.7185 7.8273 -2.4181 14 7 4.4124 7.2557 -1.2827 15 14 5.3096 9.5991 -2.4422 16 1 5.5895 10.0086 -3.8419 17 1 4.2597 10.4791 -1.8690 18 1 6.5503 9.7181 -1.6348 19 7 3.7143 5.2256 -2.4572 20 6 2.9633 4.0386 0.0174 21 6 2.6291 3.4222 1.2033 22 6 2.1655 2.1107 1.2002 23 7 1.8334 1.4870 2.4019 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.2561 1.4992 -2.1209 30 1 2.5114 2.3694 -3.6863 31 1 4.0468 5.6242 -5.7667 32 1 4.4927 7.7516 -0.4529 33 1 3.3274 5.0553 0.0207 34 1 2.7311 3.9563 2.1365 35 1 1.5102 0.5725 2.4007 36 1 1.9256 1.9677 3.2394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244292359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:04 Heat of formation + Delta-G solvation = 50.875375 kcal Electronic energy + Delta-G solvation = -19521.189756 eV Core-core repulsion = 16583.149295 eV Total energy + Delta-G solvation = -2938.040460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.47544 -38.53673 -34.70563 -33.99380 -33.49237 -31.88030 -30.57127 -29.22459 -27.52517 -25.86119 -23.67621 -22.87999 -22.29805 -21.07784 -19.61878 -17.62551 -16.72238 -16.68571 -15.85131 -15.18231 -14.98871 -14.77114 -14.03354 -13.85522 -13.33007 -13.16921 -13.08535 -13.01295 -12.73029 -11.96700 -11.77606 -11.61183 -11.39311 -11.32757 -11.20142 -10.86318 -10.71298 -10.41792 -10.34021 -10.13523 -9.79683 -9.47522 -8.98937 -8.25653 -7.97414 -7.40716 -6.73578 -6.50751 -4.67324 1.70298 1.98982 2.72090 3.03287 3.07391 3.09246 3.21598 3.85185 4.09584 4.38746 4.75682 5.01117 5.05843 5.39483 5.46343 5.49446 5.69628 5.79056 5.84913 5.90904 5.97794 6.06794 6.12400 6.21942 6.33891 6.37526 6.46176 6.72696 6.81165 6.86248 7.01568 7.08805 7.19427 7.40749 7.49354 7.68392 7.82492 7.94197 8.06950 8.44298 8.68299 9.27697 9.86258 10.14015 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023547 B = 0.005251 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.801488 B = 5331.172332 C = 6422.272774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.070 4.070 3 C -0.174 4.174 4 C -0.057 4.057 5 C -0.075 4.075 6 C 0.149 3.851 7 C -0.112 4.112 8 N -0.430 5.430 9 C -0.069 4.069 10 C 0.211 3.789 11 C -0.416 4.416 12 H 0.090 0.910 13 C 0.068 3.932 14 N -0.712 5.712 15 Si 0.912 3.088 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.446 5.446 20 C -0.032 4.032 21 C -0.207 4.207 22 C 0.213 3.787 23 N -0.882 5.882 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.275 0.725 33 H 0.149 0.851 34 H 0.114 0.886 35 H 0.393 0.607 36 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 -7.724 8.087 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.179 4.179 4 C -0.076 4.076 5 C -0.078 4.078 6 C 0.002 3.998 7 C -0.270 4.270 8 N -0.142 5.142 9 C -0.239 4.239 10 C 0.084 3.916 11 C -0.448 4.448 12 H 0.108 0.892 13 C -0.158 4.158 14 N -0.333 5.333 15 Si 0.735 3.265 16 H -0.182 1.182 17 H -0.197 1.197 18 H -0.197 1.197 19 N -0.164 5.164 20 C -0.051 4.051 21 C -0.229 4.229 22 C 0.109 3.891 23 N -0.422 5.422 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.132 0.868 35 H 0.221 0.779 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.207 -7.659 8.262 12.026 hybrid contribution 0.177 0.665 0.389 0.791 sum -4.030 -6.994 8.651 11.832 Atomic orbital electron populations 1.21781 0.95498 1.00906 1.02345 1.20261 0.95510 0.93146 1.01890 1.19070 1.10233 0.96761 0.91820 1.20870 0.96194 0.93865 0.96693 1.18459 1.03722 0.93402 0.92222 1.20664 0.94539 0.92771 0.91844 1.22515 1.13915 1.01748 0.88870 1.67637 1.07089 1.09802 1.29653 1.23169 1.08864 0.93632 0.98206 1.19368 0.90785 0.93835 0.87635 1.19641 1.32464 0.97651 0.95010 0.89164 1.26103 0.94114 1.00481 0.95085 1.70070 1.28629 1.36194 0.98448 0.86198 0.78978 0.81462 0.79834 1.18210 1.19700 1.19745 1.69559 1.13287 1.06077 1.27480 1.21420 0.92724 1.00756 0.90220 1.20533 1.09695 0.94034 0.98688 1.17616 0.93883 0.91750 0.85824 1.42422 1.76815 1.17249 1.05755 0.92912 0.92322 0.93032 0.91240 0.92271 0.86071 0.85617 0.85045 0.91380 0.83361 0.86785 0.77856 0.77954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.90 37.16 0.37 -1.19 16 2 C -0.07 -0.82 5.49 -27.88 -0.15 -0.97 16 3 C -0.17 -2.66 5.15 -104.47 -0.54 -3.19 16 4 C -0.06 -1.01 9.04 -39.28 -0.36 -1.37 16 5 C -0.07 -1.60 5.88 -104.87 -0.62 -2.21 16 6 C 0.15 3.70 6.73 -82.76 -0.56 3.15 16 7 C -0.11 -2.71 10.61 -16.71 -0.18 -2.88 16 8 N -0.43 -10.98 10.47 -12.04 -0.13 -11.11 16 9 C -0.07 -1.78 10.97 -16.55 -0.18 -1.97 16 10 C 0.21 5.74 6.54 -84.84 -0.55 5.19 16 11 C -0.42 -10.75 9.15 -37.74 -0.35 -11.09 16 12 H 0.09 2.16 7.85 -52.49 -0.41 1.74 16 13 C 0.07 1.66 5.49 -17.34 -0.10 1.57 16 14 N -0.71 -17.96 11.51 55.55 0.64 -17.32 16 15 Si 0.91 17.85 29.56 -169.99 -5.03 12.82 16 16 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 17 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 19 N -0.45 -12.15 7.17 -7.51 -0.05 -12.20 16 20 C -0.03 -0.65 9.57 -39.27 -0.38 -1.02 16 21 C -0.21 -3.47 9.87 -39.44 -0.39 -3.86 16 22 C 0.21 3.17 6.74 -83.79 -0.56 2.60 16 23 N -0.88 -9.46 8.98 32.43 0.29 -9.17 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 28 H 0.06 0.60 6.80 -51.93 -0.35 0.24 16 29 H 0.12 2.02 6.21 -52.49 -0.33 1.69 16 30 H 0.13 2.66 6.21 -52.49 -0.33 2.33 16 31 H 0.13 3.05 8.06 -52.48 -0.42 2.63 16 32 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 33 H 0.15 3.36 7.55 -52.49 -0.40 2.96 16 34 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.39 3.52 6.91 -40.82 -0.28 3.24 16 36 H 0.39 3.49 8.84 -40.82 -0.36 3.13 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -29.74 307.40 -8.30 -38.04 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -4.12 Total: 11.57 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -4.54 Total: -17.26 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.75 Total: -49.80 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.74 -8.30 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244292359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.916 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds