Wall clock time and date at job start Mon Mar 30 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47328 * 2 1 4 4 C 1.37799 * 119.97508 * 265.00292 * 3 2 1 5 5 C 1.39490 * 119.94693 * 180.02562 * 4 3 2 6 6 C 1.48174 * 120.04804 * 179.97438 * 5 4 3 7 7 C 1.40118 * 119.99619 * 5.00511 * 6 5 4 8 8 N 1.32144 * 120.29086 * 180.27666 * 7 6 5 9 9 C 1.31911 * 120.29192 * 359.43510 * 8 7 6 10 10 C 1.40805 * 119.97939 * 0.58202 * 9 8 7 11 11 C 1.41315 * 120.14486 * 179.67703 * 10 9 8 12 12 H 1.07997 * 119.99575 * 353.75383 * 11 10 9 13 13 C 1.40031 * 120.00300 * 173.75592 * 11 10 9 14 14 N 1.30743 * 119.99813 * 6.29813 * 13 11 10 15 15 Si 1.86800 * 120.00212 * 186.30146 * 13 11 10 16 16 H 1.48497 * 109.47032 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47104 * 119.99853 * 15 13 11 18 18 H 1.48500 * 109.47118 * 240.00020 * 15 13 11 19 19 N 1.32570 * 119.99433 * 185.01759 * 6 5 4 20 20 C 1.39535 * 119.90240 * 0.25456 * 5 4 3 21 21 C 1.37764 * 119.94180 * 359.46615 * 20 5 4 22 22 C 1.39073 * 119.97288 * 85.02374 * 3 2 1 23 23 N 1.39402 * 119.94625 * 359.97438 * 22 3 2 24 24 H 1.09001 * 109.46662 * 300.00061 * 1 2 3 25 25 H 1.08994 * 109.46939 * 59.99461 * 1 2 3 26 26 H 1.08994 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47369 * 240.00173 * 2 1 3 28 28 H 1.09004 * 109.47440 * 119.99978 * 2 1 3 29 29 H 1.07998 * 120.02475 * 0.04345 * 4 3 2 30 30 H 1.07998 * 119.85203 * 359.97438 * 7 6 5 31 31 H 1.08009 * 120.00847 * 180.30132 * 9 8 7 32 32 H 0.97002 * 119.99870 * 179.97438 * 14 13 11 33 33 H 1.07992 * 120.02929 * 179.74590 * 20 5 4 34 34 H 1.08005 * 119.96996 * 180.29900 * 21 20 5 35 35 H 0.96997 * 120.00872 * 0.02562 * 23 22 3 36 36 H 0.97007 * 119.99707 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3599 2.0353 -1.1891 5 6 2.8254 3.3502 -1.1884 6 6 3.1788 4.0129 -2.4657 7 6 2.9472 3.3576 -3.6824 8 7 3.2652 3.9409 -4.8247 9 6 3.7931 5.1498 -4.8302 10 6 4.0313 5.8190 -3.6144 11 6 4.6031 7.1113 -3.6159 12 1 4.9510 7.5467 -4.5410 13 6 4.7185 7.8273 -2.4181 14 7 4.4124 7.2557 -1.2827 15 14 5.3096 9.5991 -2.4422 16 1 5.5895 10.0086 -3.8419 17 1 4.2597 10.4791 -1.8690 18 1 6.5503 9.7181 -1.6348 19 7 3.7143 5.2256 -2.4572 20 6 2.9633 4.0386 0.0174 21 6 2.6291 3.4222 1.2033 22 6 2.1655 2.1107 1.2002 23 7 1.8334 1.4870 2.4019 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.2561 1.4992 -2.1209 30 1 2.5114 2.3694 -3.6863 31 1 4.0468 5.6242 -5.7667 32 1 4.4927 7.7516 -0.4529 33 1 3.3274 5.0553 0.0207 34 1 2.7311 3.9563 2.1365 35 1 1.5102 0.5725 2.4007 36 1 1.9256 1.9677 3.2394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244292359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:04 Heat of formation + Delta-G solvation = 32.338816 kcal Electronic energy + Delta-G solvation = -19521.993561 eV Core-core repulsion = 16583.149295 eV Total energy + Delta-G solvation = -2938.844266 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06205 -40.13577 -36.12190 -35.80483 -34.55656 -33.71468 -32.29615 -30.51611 -28.98849 -27.70633 -24.92547 -24.49728 -23.91719 -22.60065 -21.02064 -19.45794 -18.04738 -17.96053 -17.45433 -17.01828 -16.69026 -16.32134 -15.22500 -15.08493 -14.91302 -14.69421 -14.51727 -14.29746 -14.07084 -13.43775 -13.29134 -13.02309 -13.01003 -12.81569 -12.51265 -12.42060 -11.98989 -11.91629 -11.70833 -11.58241 -11.50959 -11.41065 -10.75290 -9.77386 -9.59005 -9.31785 -8.36593 -8.08860 -6.64359 0.08881 0.62691 0.97044 1.34494 1.41381 1.54168 1.57816 2.19929 2.74394 3.07134 3.10320 3.69073 3.90066 3.98207 4.04266 4.09701 4.35066 4.39200 4.58362 4.62812 4.65198 4.69332 4.80550 4.91961 5.05836 5.08307 5.15875 5.17405 5.24253 5.37556 5.48037 5.52827 5.63979 5.80691 5.97631 6.05386 6.17890 6.52553 6.65401 6.74716 7.07520 7.32831 7.93757 8.32981 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023547 B = 0.005251 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.801488 B = 5331.172332 C = 6422.272774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C -0.171 4.171 4 C -0.054 4.054 5 C -0.117 4.117 6 C 0.141 3.859 7 C -0.125 4.125 8 N -0.438 5.438 9 C -0.096 4.096 10 C 0.178 3.822 11 C -0.441 4.441 12 H 0.101 0.899 13 C 0.023 3.977 14 N -0.742 5.742 15 Si 0.994 3.006 16 H -0.251 1.251 17 H -0.266 1.266 18 H -0.265 1.265 19 N -0.476 5.476 20 C -0.050 4.050 21 C -0.211 4.211 22 C 0.231 3.769 23 N -0.859 5.859 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.284 0.716 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.407 0.593 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 -9.002 10.119 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.176 4.176 4 C -0.074 4.074 5 C -0.120 4.120 6 C -0.006 4.006 7 C -0.284 4.284 8 N -0.150 5.150 9 C -0.264 4.264 10 C 0.052 3.948 11 C -0.472 4.472 12 H 0.119 0.881 13 C -0.200 4.200 14 N -0.363 5.363 15 Si 0.814 3.186 16 H -0.174 1.174 17 H -0.191 1.191 18 H -0.189 1.189 19 N -0.194 5.194 20 C -0.070 4.070 21 C -0.234 4.234 22 C 0.124 3.876 23 N -0.400 5.400 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.147 0.853 30 H 0.171 0.829 31 H 0.164 0.836 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.238 0.762 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.871 -8.976 10.316 14.515 hybrid contribution 0.302 0.890 -0.055 0.942 sum -4.568 -8.085 10.261 13.839 Atomic orbital electron populations 1.21756 0.94415 1.02347 1.01724 1.20361 0.96275 0.90576 1.03454 1.19460 1.08770 0.98513 0.90854 1.20976 0.95624 0.92501 0.98312 1.18474 1.07420 0.95174 0.90975 1.21302 0.93183 0.92244 0.93866 1.22962 1.14032 1.02830 0.88536 1.67638 1.07194 1.09804 1.30325 1.23360 1.10307 0.94184 0.98540 1.19860 0.91661 0.94913 0.88364 1.20066 1.32956 0.97812 0.96387 0.88100 1.27090 0.93788 1.05066 0.94100 1.70172 1.28592 1.38265 0.99300 0.84972 0.78463 0.75034 0.80161 1.17406 1.19116 1.18938 1.69581 1.14689 1.07403 1.27712 1.21208 0.94397 0.99749 0.91645 1.20640 1.09553 0.95079 0.98083 1.17645 0.91760 0.90940 0.87251 1.42372 1.74909 1.17815 1.04864 0.92696 0.93844 0.90600 0.90665 0.89847 0.85286 0.82880 0.83587 0.90549 0.86668 0.84699 0.76173 0.76361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.90 71.98 0.71 -1.81 16 2 C -0.07 -1.35 5.49 29.85 0.16 -1.19 16 3 C -0.17 -4.81 5.15 -19.77 -0.10 -4.91 16 4 C -0.05 -1.92 9.04 22.47 0.20 -1.72 16 5 C -0.12 -5.15 5.88 -20.02 -0.12 -5.27 16 6 C 0.14 7.36 6.73 42.13 0.28 7.65 16 7 C -0.12 -6.23 10.61 85.10 0.90 -5.33 16 8 N -0.44 -23.13 10.47 -192.00 -2.01 -25.14 16 9 C -0.10 -5.16 10.97 85.31 0.94 -4.23 16 10 C 0.18 10.24 6.54 40.22 0.26 10.50 16 11 C -0.44 -23.66 9.15 23.46 0.21 -23.45 16 12 H 0.10 4.97 7.85 -2.91 -0.02 4.94 16 13 C 0.02 1.14 5.49 85.29 0.47 1.61 16 14 N -0.74 -38.89 11.51 21.84 0.25 -38.64 16 15 Si 0.99 36.90 29.56 68.60 2.03 38.93 16 16 H -0.25 -8.91 7.11 99.48 0.71 -8.21 16 17 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 18 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 19 N -0.48 -27.36 7.17 -177.68 -1.27 -28.64 16 20 C -0.05 -2.12 9.57 22.47 0.22 -1.91 16 21 C -0.21 -6.87 9.87 22.36 0.22 -6.65 16 22 C 0.23 6.24 6.74 38.35 0.26 6.50 16 23 N -0.86 -14.72 8.98 -51.32 -0.46 -15.18 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.43 8.05 -2.39 -0.02 1.41 16 28 H 0.08 1.25 6.80 -2.38 -0.02 1.23 16 29 H 0.13 4.21 6.21 -2.91 -0.02 4.19 16 30 H 0.15 6.54 6.21 -2.91 -0.02 6.53 16 31 H 0.15 7.10 8.06 -2.91 -0.02 7.08 16 32 H 0.28 13.27 8.29 -92.71 -0.77 12.50 16 33 H 0.12 5.60 7.55 -2.91 -0.02 5.57 16 34 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.41 5.21 6.91 -92.71 -0.64 4.56 16 36 H 0.41 5.42 8.84 -92.70 -0.82 4.60 16 Total: -1.00 -68.46 307.40 2.83 -65.63 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.33 Total: 33.25 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 4.62 Total: -30.21 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -3.49 Total: -107.60 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -68.46 2.83 -65.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244292359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.967 kcal (2) G-P(sol) polarization free energy of solvation -68.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds