Wall clock time and date at job start Mon Mar 30 2020 01:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.46812 * 2 1 4 4 C 1.37658 * 119.96176 * 264.99915 * 3 2 1 5 5 C 1.39818 * 119.92567 * 179.97438 * 4 3 2 6 6 C 1.47744 * 120.06936 * 180.02562 * 5 4 3 7 7 C 1.40538 * 120.79554 * 359.72036 * 6 5 4 8 8 N 1.31544 * 119.08147 * 179.71373 * 7 6 5 9 9 C 1.33698 * 120.83738 * 0.56966 * 8 7 6 10 10 C 1.40956 * 119.12203 * 179.67641 * 9 8 7 11 11 H 1.08000 * 119.99380 * 173.63929 * 10 9 8 12 12 C 1.40095 * 120.00304 * 353.64000 * 10 9 8 13 13 N 1.30689 * 120.00178 * 6.34166 * 12 10 9 14 14 Si 1.86802 * 119.99894 * 186.34632 * 12 10 9 15 15 H 1.48498 * 109.47307 * 94.98482 * 14 12 10 16 16 H 1.48503 * 109.47000 * 214.98528 * 14 12 10 17 17 H 1.48495 * 109.47009 * 334.98061 * 14 12 10 18 18 N 1.33692 * 121.74775 * 359.70876 * 9 8 7 19 19 C 1.31534 * 120.83892 * 359.97438 * 18 9 8 20 20 C 1.39854 * 119.86120 * 359.97438 * 5 4 3 21 21 C 1.37622 * 119.93006 * 0.02562 * 20 5 4 22 22 C 1.39220 * 119.96574 * 84.72505 * 3 2 1 23 23 N 1.39219 * 119.92996 * 0.02562 * 22 3 2 24 24 H 1.09006 * 109.47188 * 299.99931 * 1 2 3 25 25 H 1.09001 * 109.47459 * 60.00099 * 1 2 3 26 26 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47459 * 119.99901 * 2 1 3 28 28 H 1.08998 * 109.47335 * 240.00355 * 2 1 3 29 29 H 1.07998 * 120.03986 * 359.96083 * 4 3 2 30 30 H 1.07997 * 120.45949 * 0.02562 * 7 6 5 31 31 H 0.97000 * 119.99900 * 179.97438 * 13 12 10 32 32 H 1.08004 * 120.45681 * 179.97438 * 19 18 9 33 33 H 1.08000 * 120.03360 * 180.02562 * 20 5 4 34 34 H 1.07999 * 119.96613 * 180.02562 * 21 20 5 35 35 H 0.97002 * 120.00028 * 359.97438 * 23 22 3 36 36 H 0.96994 * 120.00118 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3594 2.0345 -1.1881 5 6 2.8248 3.3529 -1.1872 6 6 3.1763 4.0147 -2.4606 7 6 3.0550 3.3327 -3.6834 8 7 3.3719 3.9562 -4.7974 9 6 3.8150 5.2174 -4.7747 10 6 4.1508 5.8485 -5.9895 11 1 4.4114 6.8966 -5.9994 12 6 4.1465 5.1164 -7.1839 13 7 3.7130 3.8835 -7.1931 14 14 4.7606 5.9023 -8.7634 15 1 6.1891 5.5521 -8.9677 16 1 3.9595 5.4019 -9.9093 17 1 4.6212 7.3777 -8.6688 18 7 3.9486 5.8955 -3.6303 19 6 3.6453 5.3394 -2.4776 20 6 2.9559 4.0443 0.0213 21 6 2.6272 3.4253 1.2057 22 6 2.1595 2.1135 1.2010 23 7 1.8229 1.4919 2.4003 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.2569 1.4980 -2.1198 30 1 2.7016 2.3125 -3.7085 31 1 3.7097 3.3768 -8.0202 32 1 3.7560 5.8928 -1.5567 33 1 3.3147 5.0629 0.0252 34 1 2.7278 3.9588 2.1393 35 1 1.4997 0.5772 2.3986 36 1 1.9114 1.9733 3.2377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244295378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:06 Heat of formation + Delta-G solvation = 54.695064 kcal Electronic energy + Delta-G solvation = -19184.949101 eV Core-core repulsion = 16247.074275 eV Total energy + Delta-G solvation = -2937.874826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.48148 -38.55476 -34.88446 -33.69145 -33.51864 -31.87861 -30.74073 -29.29968 -27.91655 -25.47082 -24.01513 -22.69868 -22.36658 -21.06411 -19.73965 -17.95229 -16.91852 -16.78378 -15.78685 -15.30846 -15.01408 -14.56090 -14.04105 -13.77204 -13.31857 -13.23907 -13.06369 -12.84673 -12.66493 -12.24857 -11.98672 -11.80649 -11.39561 -11.36490 -11.29026 -10.90109 -10.75944 -10.46362 -10.33714 -10.28513 -9.49056 -9.15777 -9.12758 -8.36732 -8.19935 -7.34192 -6.72811 -6.62725 -4.70654 1.73447 1.89252 2.78167 2.99748 3.01293 3.06440 3.13573 3.81907 4.11917 4.33663 4.69884 5.00730 5.05646 5.34279 5.46743 5.54370 5.67970 5.75710 5.78726 5.87657 5.91550 5.95578 6.01746 6.11225 6.20423 6.30511 6.39291 6.46397 6.67339 6.84966 6.94280 6.97797 7.13332 7.32362 7.55407 7.63487 7.83560 7.94880 8.08936 8.42749 8.50131 9.07178 10.02871 10.22115 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035674 B = 0.004016 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.690546 B = 6971.169889 C = 7660.395604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 C -0.150 4.150 4 C -0.093 4.093 5 C -0.017 4.017 6 C -0.314 4.314 7 C 0.174 3.826 8 N -0.508 5.508 9 C 0.381 3.619 10 C -0.384 4.384 11 H 0.095 0.905 12 C 0.062 3.938 13 N -0.701 5.701 14 Si 0.921 3.079 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.258 1.258 18 N -0.593 5.593 19 C 0.179 3.821 20 C -0.100 4.100 21 C -0.184 4.184 22 C 0.182 3.818 23 N -0.885 5.885 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.130 0.870 31 H 0.278 0.722 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.392 0.608 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -6.434 11.485 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.154 4.154 4 C -0.112 4.112 5 C -0.020 4.020 6 C -0.324 4.324 7 C -0.002 4.002 8 N -0.224 5.224 9 C 0.147 3.853 10 C -0.418 4.418 11 H 0.113 0.887 12 C -0.166 4.166 13 N -0.321 5.321 14 Si 0.744 3.256 15 H -0.192 1.192 16 H -0.198 1.198 17 H -0.181 1.181 18 N -0.312 5.312 19 C 0.005 3.995 20 C -0.119 4.119 21 C -0.206 4.206 22 C 0.080 3.920 23 N -0.426 5.426 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.147 0.853 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.220 0.780 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.474 -6.073 10.233 12.396 hybrid contribution -0.072 -0.370 0.631 0.735 sum -3.546 -6.442 10.864 13.119 Atomic orbital electron populations 1.21770 0.95417 1.00955 1.02324 1.20300 0.95589 0.93334 1.01902 1.19144 1.07963 0.96353 0.91968 1.20819 0.99409 0.94460 0.96485 1.18489 0.98533 0.92905 0.92097 1.19747 1.20761 0.98345 0.93533 1.23049 0.91244 0.97922 0.88013 1.69336 1.15941 1.10280 1.26831 1.19938 0.88571 0.85940 0.90851 1.19412 1.35809 0.97691 0.88878 0.88682 1.26191 0.94258 0.94837 1.01286 1.70144 1.25947 1.07902 1.28157 0.86085 0.79422 0.80632 0.79450 1.19193 1.19849 1.18133 1.68635 1.24824 1.39065 0.98653 1.22676 0.90246 0.90862 0.95729 1.20884 1.00312 0.99356 0.91366 1.20360 1.08159 0.94027 0.98088 1.17475 0.96664 0.91975 0.85894 1.42284 1.77429 1.17215 1.05684 0.92922 0.92300 0.93010 0.92267 0.91217 0.86455 0.85316 0.91118 0.85213 0.86547 0.87133 0.77968 0.78196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 37.16 0.37 -1.19 16 2 C -0.07 -0.86 5.48 -27.88 -0.15 -1.01 16 3 C -0.15 -2.21 5.15 -104.47 -0.54 -2.75 16 4 C -0.09 -1.60 9.07 -39.20 -0.36 -1.95 16 5 C -0.02 -0.32 5.89 -104.82 -0.62 -0.94 16 6 C -0.31 -7.06 5.94 -104.28 -0.62 -7.68 16 7 C 0.17 4.21 10.70 -16.81 -0.18 4.03 16 8 N -0.51 -14.04 7.85 -12.40 -0.10 -14.14 16 9 C 0.38 10.76 7.34 -158.13 -1.16 9.60 16 10 C -0.38 -10.43 9.34 -37.86 -0.35 -10.79 16 11 H 0.10 2.47 7.86 -52.49 -0.41 2.06 16 12 C 0.06 1.55 5.49 -17.34 -0.10 1.46 16 13 N -0.70 -18.13 11.43 55.55 0.63 -17.49 16 14 Si 0.92 18.14 29.56 -169.99 -5.03 13.11 16 15 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 18 N -0.59 -15.83 10.33 -12.40 -0.13 -15.96 16 19 C 0.18 4.18 10.70 -16.81 -0.18 4.00 16 20 C -0.10 -1.69 9.44 -39.20 -0.37 -2.06 16 21 C -0.18 -2.71 9.87 -39.42 -0.39 -3.09 16 22 C 0.18 2.54 6.74 -83.76 -0.56 1.98 16 23 N -0.88 -8.99 8.97 32.45 0.29 -8.69 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.59 6.82 -51.93 -0.35 0.24 16 28 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 29 H 0.12 1.95 6.28 -52.49 -0.33 1.62 16 30 H 0.13 2.74 6.32 -52.49 -0.33 2.41 16 31 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 32 H 0.13 2.56 6.33 -52.48 -0.33 2.23 16 33 H 0.12 1.84 6.28 -52.49 -0.33 1.51 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.39 3.41 6.91 -40.82 -0.28 3.13 16 36 H 0.39 3.20 8.83 -40.82 -0.36 2.84 16 LS Contribution 304.94 15.07 4.60 4.60 Total: -1.00 -30.41 304.94 -8.91 -39.32 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -3.97 Total: 9.64 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -5.21 Total: -10.39 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.70 Total: -56.28 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.41 -8.91 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244295378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.019 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds