Wall clock time and date at job start Mon Mar 30 2020 01:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50708 * 109.46812 * 2 1 4 4 C 1.37658 * 119.96176 * 264.99915 * 3 2 1 5 5 C 1.39818 * 119.92567 * 179.97438 * 4 3 2 6 6 C 1.47744 * 120.06936 * 180.02562 * 5 4 3 7 7 C 1.40538 * 120.79554 * 359.72036 * 6 5 4 8 8 N 1.31544 * 119.08147 * 179.71373 * 7 6 5 9 9 C 1.33698 * 120.83738 * 0.56966 * 8 7 6 10 10 C 1.40956 * 119.12203 * 179.67641 * 9 8 7 11 11 H 1.08000 * 119.99380 * 173.63929 * 10 9 8 12 12 C 1.40095 * 120.00304 * 353.64000 * 10 9 8 13 13 N 1.30689 * 120.00178 * 6.34166 * 12 10 9 14 14 Si 1.86802 * 119.99894 * 186.34632 * 12 10 9 15 15 H 1.48498 * 109.47307 * 94.98482 * 14 12 10 16 16 H 1.48503 * 109.47000 * 214.98528 * 14 12 10 17 17 H 1.48495 * 109.47009 * 334.98061 * 14 12 10 18 18 N 1.33692 * 121.74775 * 359.70876 * 9 8 7 19 19 C 1.31534 * 120.83892 * 359.97438 * 18 9 8 20 20 C 1.39854 * 119.86120 * 359.97438 * 5 4 3 21 21 C 1.37622 * 119.93006 * 0.02562 * 20 5 4 22 22 C 1.39220 * 119.96574 * 84.72505 * 3 2 1 23 23 N 1.39219 * 119.92996 * 0.02562 * 22 3 2 24 24 H 1.09006 * 109.47188 * 299.99931 * 1 2 3 25 25 H 1.09001 * 109.47459 * 60.00099 * 1 2 3 26 26 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47459 * 119.99901 * 2 1 3 28 28 H 1.08998 * 109.47335 * 240.00355 * 2 1 3 29 29 H 1.07998 * 120.03986 * 359.96083 * 4 3 2 30 30 H 1.07997 * 120.45949 * 0.02562 * 7 6 5 31 31 H 0.97000 * 119.99900 * 179.97438 * 13 12 10 32 32 H 1.08004 * 120.45681 * 179.97438 * 19 18 9 33 33 H 1.08000 * 120.03360 * 180.02562 * 20 5 4 34 34 H 1.07999 * 119.96613 * 180.02562 * 21 20 5 35 35 H 0.97002 * 120.00028 * 359.97438 * 23 22 3 36 36 H 0.96994 * 120.00118 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3594 2.0345 -1.1881 5 6 2.8248 3.3529 -1.1872 6 6 3.1763 4.0147 -2.4606 7 6 3.0550 3.3327 -3.6834 8 7 3.3719 3.9562 -4.7974 9 6 3.8150 5.2174 -4.7747 10 6 4.1508 5.8485 -5.9895 11 1 4.4114 6.8966 -5.9994 12 6 4.1465 5.1164 -7.1839 13 7 3.7130 3.8835 -7.1931 14 14 4.7606 5.9023 -8.7634 15 1 6.1891 5.5521 -8.9677 16 1 3.9595 5.4019 -9.9093 17 1 4.6212 7.3777 -8.6688 18 7 3.9486 5.8955 -3.6303 19 6 3.6453 5.3394 -2.4776 20 6 2.9559 4.0443 0.0213 21 6 2.6272 3.4253 1.2057 22 6 2.1595 2.1135 1.2010 23 7 1.8229 1.4919 2.4003 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.2569 1.4980 -2.1198 30 1 2.7016 2.3125 -3.7085 31 1 3.7097 3.3768 -8.0202 32 1 3.7560 5.8928 -1.5567 33 1 3.3147 5.0629 0.0252 34 1 2.7278 3.9588 2.1393 35 1 1.4997 0.5772 2.3986 36 1 1.9114 1.9733 3.2377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244295378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:06 Heat of formation + Delta-G solvation = 36.161602 kcal Electronic energy + Delta-G solvation = -19185.752773 eV Core-core repulsion = 16247.074275 eV Total energy + Delta-G solvation = -2938.678497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03983 -40.09910 -36.29833 -35.36565 -34.55622 -33.78422 -32.37010 -30.49028 -29.49078 -27.09281 -25.36954 -24.12210 -24.03444 -22.48822 -21.07937 -19.79540 -18.21432 -18.05252 -17.36271 -16.83883 -16.57556 -16.16760 -15.07139 -15.06235 -14.90157 -14.62202 -14.41557 -14.27545 -14.11812 -13.80371 -13.27422 -13.03833 -12.97879 -12.87578 -12.66169 -12.43821 -11.95643 -11.88938 -11.72984 -11.49481 -11.25838 -11.07303 -10.95597 -9.86555 -9.56141 -9.27705 -8.47318 -8.07157 -6.62185 0.18432 0.65290 1.04382 1.24753 1.39873 1.56565 1.57849 2.19403 2.69880 3.15842 3.18624 3.88615 3.92918 3.94770 4.01634 4.07706 4.23164 4.40662 4.41924 4.56293 4.59472 4.66581 4.72932 4.95514 5.02412 5.05912 5.13683 5.19314 5.31098 5.33911 5.45219 5.54729 5.66259 5.89076 6.05212 6.10781 6.15031 6.49892 6.58485 6.75253 7.13705 7.16686 8.18605 8.33060 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035674 B = 0.004016 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.690546 B = 6971.169889 C = 7660.395604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C -0.160 4.160 4 C -0.095 4.095 5 C -0.062 4.062 6 C -0.291 4.291 7 C 0.150 3.850 8 N -0.538 5.538 9 C 0.351 3.649 10 C -0.428 4.428 11 H 0.091 0.909 12 C 0.022 3.978 13 N -0.741 5.741 14 Si 1.003 2.997 15 H -0.260 1.260 16 H -0.260 1.260 17 H -0.255 1.255 18 N -0.618 5.618 19 C 0.161 3.839 20 C -0.098 4.098 21 C -0.190 4.190 22 C 0.201 3.799 23 N -0.865 5.865 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.148 0.852 31 H 0.286 0.714 32 H 0.163 0.837 33 H 0.123 0.877 34 H 0.141 0.859 35 H 0.403 0.597 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 -7.636 13.913 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.164 4.164 4 C -0.114 4.114 5 C -0.066 4.066 6 C -0.301 4.301 7 C -0.024 4.024 8 N -0.255 5.255 9 C 0.115 3.885 10 C -0.462 4.462 11 H 0.109 0.891 12 C -0.202 4.202 13 N -0.363 5.363 14 Si 0.821 3.179 15 H -0.185 1.185 16 H -0.184 1.184 17 H -0.178 1.178 18 N -0.337 5.337 19 C -0.012 4.012 20 C -0.117 4.117 21 C -0.213 4.213 22 C 0.096 3.904 23 N -0.407 5.407 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.165 0.835 31 H 0.097 0.903 32 H 0.180 0.820 33 H 0.141 0.859 34 H 0.159 0.841 35 H 0.234 0.766 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.026 -7.324 12.775 15.266 hybrid contribution -0.029 -0.185 0.325 0.375 sum -4.054 -7.510 13.100 15.634 Atomic orbital electron populations 1.21737 0.94487 1.02207 1.01665 1.20364 0.96269 0.91392 1.03001 1.19440 1.07673 0.97951 0.91379 1.20902 0.99095 0.93892 0.97541 1.18416 1.02646 0.94228 0.91294 1.20078 1.17507 0.97818 0.94655 1.23475 0.91708 0.98920 0.88287 1.69287 1.17190 1.10526 1.28466 1.20348 0.89637 0.86664 0.91840 1.19689 1.38459 0.98023 0.90072 0.89068 1.27141 0.93701 0.95148 1.04234 1.70204 1.27068 1.09368 1.29635 0.84901 0.78931 0.79479 0.74589 1.18504 1.18403 1.17814 1.68639 1.26015 1.39721 0.99345 1.23253 0.90186 0.91736 0.95984 1.21029 0.99630 0.99667 0.91371 1.20648 1.07721 0.94511 0.98422 1.17631 0.94242 0.91699 0.86870 1.42274 1.75629 1.17733 1.05021 0.92449 0.94077 0.90866 0.89990 0.91395 0.86982 0.83457 0.90261 0.81964 0.85900 0.84138 0.76636 0.76489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.89 71.98 0.71 -1.89 16 2 C -0.07 -1.47 5.48 29.85 0.16 -1.31 16 3 C -0.16 -4.31 5.15 -19.76 -0.10 -4.41 16 4 C -0.10 -3.21 9.07 22.51 0.20 -3.01 16 5 C -0.06 -2.36 5.89 -19.99 -0.12 -2.48 16 6 C -0.29 -13.44 5.94 -19.64 -0.12 -13.55 16 7 C 0.15 7.59 10.70 85.30 0.91 8.50 16 8 N -0.54 -31.32 7.85 -193.15 -1.52 -32.84 16 9 C 0.35 20.93 7.34 134.84 0.99 21.92 16 10 C -0.43 -24.52 9.34 23.39 0.22 -24.30 16 11 H 0.09 5.03 7.86 -2.91 -0.02 5.01 16 12 C 0.02 1.12 5.49 85.31 0.47 1.59 16 13 N -0.74 -39.92 11.43 21.85 0.25 -39.67 16 14 Si 1.00 38.12 29.56 68.60 2.03 40.15 16 15 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 16 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 17 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 18 N -0.62 -34.47 10.33 -193.15 -2.00 -36.47 16 19 C 0.16 7.68 10.70 85.30 0.91 8.60 16 20 C -0.10 -3.14 9.44 22.52 0.21 -2.93 16 21 C -0.19 -4.95 9.87 22.37 0.22 -4.73 16 22 C 0.20 4.85 6.74 38.45 0.26 5.11 16 23 N -0.87 -13.37 8.97 -51.24 -0.46 -13.83 16 24 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.29 6.82 -2.39 -0.02 1.27 16 28 H 0.07 1.42 8.05 -2.39 -0.02 1.40 16 29 H 0.11 3.78 6.28 -2.91 -0.02 3.76 16 30 H 0.15 6.58 6.32 -2.91 -0.02 6.56 16 31 H 0.29 13.65 8.29 -92.71 -0.77 12.88 16 32 H 0.16 6.41 6.33 -2.91 -0.02 6.39 16 33 H 0.12 3.67 6.28 -2.91 -0.02 3.65 16 34 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 35 H 0.40 4.94 6.91 -92.71 -0.64 4.30 16 36 H 0.41 4.51 8.83 -92.71 -0.82 3.69 16 Total: -1.00 -69.97 304.94 2.92 -67.05 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.32 Total: 28.51 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 4.94 Total: -12.89 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -3.72 Total: -122.81 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -69.97 2.92 -67.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244295378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.207 kcal (2) G-P(sol) polarization free energy of solvation -69.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds