Wall clock time and date at job start Mon Mar 30 2020 01:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38621 * 119.82516 * 2 1 4 4 C 1.38061 * 120.42136 * 179.97438 * 3 2 1 5 5 C 1.50708 * 119.96165 * 180.02562 * 4 3 2 6 6 C 1.38840 * 120.07460 * 359.74115 * 4 3 2 7 7 N 1.39059 * 120.17899 * 180.25004 * 6 4 3 8 8 C 1.40464 * 119.65308 * 0.53493 * 6 4 3 9 9 C 1.47514 * 120.21145 * 179.74429 * 8 6 4 10 10 N 1.33068 * 120.55267 * 307.02138 * 9 8 6 11 11 C 1.31899 * 120.02959 * 179.97438 * 10 9 8 12 12 C 1.39023 * 121.22518 * 0.02562 * 11 10 9 13 13 N 1.31516 * 121.15313 * 359.97438 * 12 11 10 14 14 C 1.34090 * 119.86353 * 0.02562 * 13 12 11 15 15 C 1.40703 * 120.58669 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00027 * 171.07719 * 15 14 13 17 17 C 1.40147 * 119.99465 * 351.08229 * 15 14 13 18 18 N 1.30703 * 120.00044 * 165.89713 * 17 15 14 19 19 Si 1.86800 * 120.00425 * 345.89092 * 17 15 14 20 20 H 1.48499 * 109.47107 * 84.75468 * 19 17 15 21 21 H 1.48500 * 109.47077 * 204.75307 * 19 17 15 22 22 H 1.48501 * 109.46784 * 324.75580 * 19 17 15 23 23 C 1.37775 * 119.82279 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47628 * 269.97737 * 1 2 3 25 25 H 1.09000 * 109.47033 * 29.97591 * 1 2 3 26 26 H 1.08995 * 109.47374 * 149.97634 * 1 2 3 27 27 H 1.08000 * 119.78924 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.47180 * 90.00355 * 5 4 3 29 29 H 1.08999 * 109.46706 * 210.00267 * 5 4 3 30 30 H 1.08993 * 109.47096 * 329.99441 * 5 4 3 31 31 H 0.96998 * 120.00529 * 186.14590 * 7 6 4 32 32 H 0.97007 * 119.99717 * 6.15307 * 7 6 4 33 33 H 1.08003 * 119.38697 * 180.02562 * 11 10 9 34 34 H 1.08008 * 119.42658 * 180.27911 * 12 11 10 35 35 H 0.96994 * 120.00418 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.04350 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1964 1.2026 0.0000 4 6 3.5769 1.2170 0.0005 5 6 4.3159 2.5304 0.0011 6 6 4.2851 0.0228 0.0065 7 7 5.6757 0.0348 0.0123 8 6 3.5897 -1.1976 0.0006 9 6 4.3298 -2.4737 0.0011 10 7 5.2703 -2.7106 -0.9100 11 6 5.9260 -3.8549 -0.8996 12 6 5.6552 -4.8322 0.0514 13 7 4.7357 -4.6479 0.9734 14 6 4.0418 -3.5010 1.0046 15 6 3.0543 -3.2880 1.9840 16 1 2.6030 -2.3129 2.0927 17 6 2.6567 -4.3413 2.8186 18 7 1.9567 -4.0942 3.8944 19 14 3.1267 -6.0985 2.3935 20 1 4.4891 -6.3853 2.9103 21 1 2.1549 -7.0347 3.0136 22 1 3.1099 -6.2724 0.9188 23 6 2.1921 -1.1953 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6501 2.1343 -0.0004 28 1 4.4938 2.8468 1.0289 29 1 5.2699 2.4107 -0.5124 30 1 3.7188 3.2835 -0.5128 31 1 6.1682 -0.7964 -0.0735 32 1 6.1531 0.8744 0.1022 33 1 6.6876 -4.0362 -1.6438 34 1 6.2130 -5.7569 0.0357 35 1 1.6818 -4.8230 4.4723 36 1 1.6500 -2.1293 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244590185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:36 Heat of formation + Delta-G solvation = 20.552503 kcal Electronic energy + Delta-G solvation = -20165.117429 eV Core-core repulsion = 17225.762070 eV Total energy + Delta-G solvation = -2939.355359 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18673 -40.00247 -36.26445 -35.84295 -34.77859 -33.76144 -32.26668 -30.86770 -28.18851 -27.90610 -26.33959 -25.13699 -23.78457 -21.90650 -21.11637 -19.80723 -18.24474 -17.93530 -17.77220 -17.02605 -16.79072 -15.74350 -15.24506 -15.00645 -14.91884 -14.77147 -14.60252 -14.30224 -13.92375 -13.74333 -13.52987 -13.23716 -13.21273 -12.96245 -12.80900 -12.67130 -12.47507 -11.99221 -11.76688 -11.64908 -11.44812 -11.10058 -11.02373 -10.00960 -9.53870 -9.12892 -9.03433 -8.07816 -6.77512 0.15772 0.59818 0.83663 0.98619 1.40504 1.50480 1.58101 2.33710 2.51063 3.01015 3.18942 3.49375 3.64687 3.97288 4.07001 4.15248 4.25523 4.41928 4.54054 4.58436 4.66905 4.78087 4.81341 4.89790 4.92872 4.98059 5.08446 5.12184 5.16865 5.27928 5.47004 5.63412 5.65444 5.76343 5.94316 5.98057 6.20063 6.35261 6.43039 6.72318 7.04778 7.12388 7.54375 7.86401 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.007844 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.837025 B = 3568.644277 C = 4579.857072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.157 4.157 3 C -0.077 4.077 4 C -0.177 4.177 5 C -0.095 4.095 6 C 0.215 3.785 7 N -0.863 5.863 8 C -0.094 4.094 9 C 0.007 3.993 10 N -0.421 5.421 11 C -0.119 4.119 12 C 0.096 3.904 13 N -0.571 5.571 14 C 0.187 3.813 15 C -0.394 4.394 16 H 0.091 0.909 17 C 0.054 3.946 18 N -0.796 5.796 19 Si 1.045 2.955 20 H -0.277 1.277 21 H -0.309 1.309 22 H -0.284 1.284 23 C -0.071 4.071 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.148 0.852 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.395 0.605 32 H 0.403 0.597 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.305 0.695 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 7.888 -5.320 9.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.159 4.159 3 C -0.096 4.096 4 C -0.182 4.182 5 C -0.152 4.152 6 C 0.108 3.892 7 N -0.404 5.404 8 C -0.100 4.100 9 C -0.144 4.144 10 N -0.133 5.133 11 C -0.276 4.276 12 C -0.068 4.068 13 N -0.293 5.293 14 C 0.063 3.937 15 C -0.425 4.425 16 H 0.109 0.891 17 C -0.170 4.170 18 N -0.418 5.418 19 Si 0.877 3.123 20 H -0.204 1.204 21 H -0.240 1.240 22 H -0.211 1.211 23 C -0.091 4.091 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.166 0.834 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.224 0.776 32 H 0.233 0.767 33 H 0.187 0.813 34 H 0.188 0.812 35 H 0.116 0.884 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.570 7.867 -5.101 9.506 hybrid contribution 0.554 -1.223 0.184 1.356 sum 2.124 6.643 -4.917 8.534 Atomic orbital electron populations 1.20623 0.89895 1.02826 1.01992 1.19794 0.97099 0.92371 1.06672 1.20952 0.92742 0.97616 0.98270 1.19619 0.94332 0.93891 1.10352 1.20576 0.99706 0.92501 1.02382 1.17779 0.84852 0.92436 0.94103 1.42358 1.02934 1.11852 1.83238 1.17839 0.92717 0.89366 1.10085 1.21293 1.00659 0.96176 0.96263 1.67925 1.04239 1.20834 1.20259 1.22975 1.07085 0.92620 1.04916 1.23630 0.92905 0.99832 0.90401 1.67508 1.12219 1.22392 1.27171 1.20540 0.92594 0.88462 0.92153 1.19562 1.14620 0.99049 1.09305 0.89088 1.27021 0.91180 1.06608 0.92173 1.69587 1.24858 1.38318 1.09065 0.83899 0.76299 0.74018 0.78042 1.20403 1.24009 1.21083 1.20864 0.92439 0.97758 0.97998 0.91933 0.89727 0.92591 0.83429 0.91211 0.91749 0.89786 0.77581 0.76654 0.81300 0.81209 0.88416 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.72 10.00 71.23 0.71 -2.01 16 2 C -0.16 -5.55 5.88 -19.88 -0.12 -5.67 16 3 C -0.08 -2.38 9.33 22.32 0.21 -2.17 16 4 C -0.18 -5.66 5.89 -19.76 -0.12 -5.77 16 5 C -0.09 -2.12 9.51 71.24 0.68 -1.44 16 6 C 0.22 8.31 6.74 38.68 0.26 8.57 16 7 N -0.86 -29.33 8.82 -50.83 -0.45 -29.78 16 8 C -0.09 -4.23 5.11 -19.92 -0.10 -4.33 16 9 C 0.01 0.32 5.84 43.55 0.25 0.57 16 10 N -0.42 -18.94 8.96 -178.81 -1.60 -20.54 16 11 C -0.12 -4.80 11.17 84.87 0.95 -3.85 16 12 C 0.10 4.03 11.17 84.93 0.95 4.98 16 13 N -0.57 -28.45 5.27 -184.14 -0.97 -29.42 16 14 C 0.19 9.85 6.42 41.55 0.27 10.11 16 15 C -0.39 -21.54 8.55 23.34 0.20 -21.34 16 16 H 0.09 5.20 6.18 -2.91 -0.02 5.18 16 17 C 0.05 2.82 5.52 85.32 0.47 3.29 16 18 N -0.80 -41.15 13.92 21.86 0.30 -40.85 16 19 Si 1.05 48.52 25.41 68.60 1.74 50.26 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.31 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.28 -13.85 6.72 99.48 0.67 -13.19 16 23 C -0.07 -3.04 7.48 22.53 0.17 -2.88 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 26 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 27 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.32 6.66 -2.39 -0.02 1.30 16 30 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 31 H 0.39 14.71 6.63 -92.71 -0.62 14.10 16 32 H 0.40 10.67 6.92 -92.70 -0.64 10.03 16 33 H 0.17 5.42 8.06 -2.91 -0.02 5.40 16 34 H 0.17 5.64 8.06 -2.91 -0.02 5.62 16 35 H 0.30 14.09 8.29 -92.71 -0.77 13.32 16 36 H 0.10 4.56 7.60 -2.91 -0.02 4.53 16 Total: -1.00 -63.08 298.91 3.64 -59.44 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.17 Total: 32.85 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: 4.78 Total: -21.95 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -2.72 Total: -120.59 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.74 Total: 50.26 kcal Total: -63.08 3.64 -59.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244590185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.993 kcal (2) G-P(sol) polarization free energy of solvation -63.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds