Wall clock time and date at job start Mon Mar 30 2020 01:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39042 * 120.00035 * 2 1 4 4 C 1.38930 * 119.63777 * 0.25159 * 3 2 1 5 5 C 1.39710 * 118.91374 * 180.31938 * 4 3 2 6 6 C 1.47933 * 120.88595 * 179.71299 * 5 4 3 7 7 N 1.32539 * 119.98569 * 316.31233 * 6 5 4 8 8 C 1.31734 * 121.72875 * 180.02562 * 7 6 5 9 9 C 1.50699 * 119.24889 * 179.97438 * 8 7 6 10 10 C 1.38877 * 121.49841 * 0.26077 * 8 7 6 11 11 C 1.36886 * 119.78798 * 359.45978 * 10 8 7 12 12 C 1.41138 * 118.38614 * 0.52311 * 11 10 8 13 13 C 1.40910 * 120.71905 * 179.72925 * 12 11 10 14 14 H 1.07998 * 120.00416 * 151.69501 * 13 12 11 15 15 C 1.40114 * 119.99815 * 331.69073 * 13 12 11 16 16 N 1.30748 * 120.00002 * 348.25066 * 15 13 12 17 17 Si 1.86796 * 120.00062 * 168.23928 * 15 13 12 18 18 H 1.48500 * 109.47035 * 60.00511 * 17 15 13 19 19 H 1.48504 * 109.47293 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47208 * 300.00463 * 17 15 13 21 21 C 1.40218 * 118.21722 * 359.44160 * 5 4 3 22 22 C 1.37777 * 119.15415 * 0.27451 * 21 5 4 23 23 N 1.32016 * 121.01542 * 0.02562 * 22 21 5 24 24 H 1.08998 * 109.46848 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47041 * 300.00428 * 1 2 3 26 26 H 1.09000 * 109.46909 * 60.00028 * 1 2 3 27 27 H 0.97003 * 119.99572 * 179.97438 * 2 1 3 28 28 H 1.08001 * 120.53862 * 0.03312 * 4 3 2 29 29 H 1.09004 * 109.46924 * 90.00240 * 9 8 7 30 30 H 1.09000 * 109.47214 * 330.00268 * 9 8 7 31 31 H 1.08994 * 109.47144 * 209.99945 * 9 8 7 32 32 H 1.08004 * 120.10470 * 179.74929 * 10 8 7 33 33 H 1.08003 * 120.80903 * 180.26998 * 11 10 8 34 34 H 0.96999 * 119.99906 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.42189 * 180.25093 * 21 5 4 36 36 H 1.08003 * 119.48661 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2041 0.0000 4 6 1.4580 2.4029 0.0053 5 6 2.1718 3.6039 -0.0016 6 6 1.4684 4.9053 -0.0027 7 7 0.4197 5.0908 -0.7917 8 6 -0.2317 6.2354 -0.8206 9 6 -1.4165 6.3854 -1.7397 10 6 0.1523 7.3090 -0.0277 11 6 1.2237 7.1832 0.8149 12 6 1.9166 5.9538 0.8404 13 6 3.0298 5.7724 1.6850 14 1 3.2720 4.7871 2.0550 15 6 3.8226 6.8702 2.0447 16 7 3.6772 8.0125 1.4253 17 14 5.0871 6.7020 3.4092 18 1 6.0722 5.6524 3.0446 19 1 5.7893 7.9972 3.5958 20 1 4.4046 6.3230 4.6725 21 6 3.5726 3.5426 -0.0016 22 6 4.1906 2.3112 -0.0006 23 7 3.4844 1.1957 -0.0002 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.9500 -0.8401 0.0004 28 1 0.3780 2.4062 0.0100 29 1 -2.3238 6.0867 -1.2145 30 1 -1.2789 5.7522 -2.6162 31 1 -1.5039 7.4257 -2.0530 32 1 -0.3956 8.2387 -0.0723 33 1 1.5339 8.0060 1.4420 34 1 4.2258 8.7726 1.6746 35 1 4.1596 4.4491 -0.0027 36 1 5.2693 2.2577 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244970503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:23 Heat of formation + Delta-G solvation = 57.050360 kcal Electronic energy + Delta-G solvation = -19807.257560 eV Core-core repulsion = 16869.484867 eV Total energy + Delta-G solvation = -2937.772693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.56940 -38.36879 -35.32548 -34.38363 -32.80468 -30.98684 -29.91272 -29.33164 -27.85434 -25.78586 -24.76097 -23.04746 -21.72460 -20.83749 -20.20731 -17.51107 -17.00380 -16.11953 -15.63985 -14.82473 -14.63669 -14.26774 -14.22160 -13.94843 -13.80650 -13.33397 -13.13292 -12.71342 -12.49197 -11.96796 -11.89345 -11.75364 -11.54502 -11.50333 -11.17188 -11.00902 -10.88850 -10.63644 -10.01390 -9.65718 -9.47154 -9.00630 -8.79092 -8.24206 -8.13972 -7.44856 -7.13003 -6.95440 -4.57785 1.84772 2.15242 2.60880 2.96012 2.98309 3.00167 3.11806 3.61751 3.77020 4.45130 4.69019 5.20514 5.30380 5.36938 5.50953 5.64152 5.79632 5.86357 5.99232 6.04138 6.11879 6.24284 6.27112 6.35389 6.47472 6.53169 6.62635 6.75942 6.91402 6.97438 7.14308 7.22987 7.38490 7.54441 7.61649 7.79301 7.85101 8.02660 8.30545 8.52383 8.58858 8.83052 9.50825 9.93167 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.008104 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.261353 B = 3454.390654 C = 5196.827478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.741 5.741 3 C 0.384 3.616 4 C -0.224 4.224 5 C 0.103 3.897 6 C 0.008 3.992 7 N -0.445 5.445 8 C -0.008 4.008 9 C -0.074 4.074 10 C -0.141 4.141 11 C -0.124 4.124 12 C 0.087 3.913 13 C -0.435 4.435 14 H 0.089 0.911 15 C 0.074 3.926 16 N -0.787 5.787 17 Si 0.912 3.088 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.262 1.262 21 C -0.199 4.199 22 C 0.124 3.876 23 N -0.562 5.562 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.398 0.602 28 H 0.124 0.876 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.286 0.714 35 H 0.141 0.859 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 -5.793 -0.289 6.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.376 5.376 3 C 0.150 3.850 4 C -0.249 4.249 5 C 0.094 3.906 6 C -0.130 4.130 7 N -0.153 5.153 8 C -0.150 4.150 9 C -0.132 4.132 10 C -0.162 4.162 11 C -0.150 4.150 12 C 0.082 3.918 13 C -0.464 4.464 14 H 0.107 0.893 15 C -0.146 4.146 16 N -0.411 5.411 17 Si 0.736 3.264 18 H -0.184 1.184 19 H -0.201 1.201 20 H -0.186 1.186 21 C -0.222 4.222 22 C -0.031 4.031 23 N -0.281 5.281 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.232 0.768 28 H 0.142 0.858 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.147 0.853 34 H 0.097 0.903 35 H 0.158 0.842 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.495 -6.946 -0.832 7.428 hybrid contribution 0.595 1.392 1.160 1.907 sum -1.900 -5.555 0.327 5.880 Atomic orbital electron populations 1.21464 0.79696 1.01717 1.01427 1.44027 1.05183 1.05057 1.83345 1.18167 0.88295 0.85934 0.92589 1.21452 1.00410 0.90871 1.12216 1.18507 0.92086 0.91021 0.88952 1.19344 0.98347 0.94367 1.00929 1.66793 1.05741 1.23426 1.19348 1.20269 1.00584 0.90711 1.03460 1.20285 0.94798 1.00423 0.97645 1.21282 0.98353 0.97994 0.98528 1.21451 0.94286 0.99160 1.00132 1.18308 0.92081 0.90970 0.90428 1.19635 1.07835 0.95496 1.23448 0.89279 1.26020 0.98212 0.94338 0.96010 1.69719 1.34781 1.02219 1.34376 0.86270 0.80171 0.78805 0.81194 1.18359 1.20106 1.18628 1.22136 0.94733 0.99204 1.06138 1.22082 0.98819 0.86988 0.95207 1.66910 1.05987 1.32628 1.22570 0.91140 0.93040 0.92876 0.76786 0.85792 0.93145 0.92585 0.92857 0.88217 0.85330 0.90267 0.84161 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.22 9.92 59.85 0.59 1.81 16 2 N -0.74 -11.04 5.89 -67.24 -0.40 -11.43 16 3 C 0.38 7.28 7.65 -155.04 -1.19 6.09 16 4 C -0.22 -4.65 9.00 -38.78 -0.35 -5.00 16 5 C 0.10 2.35 5.27 -104.63 -0.55 1.80 16 6 C 0.01 0.19 6.47 -82.23 -0.53 -0.34 16 7 N -0.44 -10.82 10.07 -5.43 -0.05 -10.88 16 8 C -0.01 -0.17 6.79 -82.40 -0.56 -0.73 16 9 C -0.07 -1.31 10.15 36.01 0.37 -0.94 16 10 C -0.14 -3.18 9.64 -39.83 -0.38 -3.57 16 11 C -0.12 -3.07 8.72 -38.97 -0.34 -3.41 16 12 C 0.09 2.22 5.56 -106.42 -0.59 1.62 16 13 C -0.44 -10.68 6.77 -37.87 -0.26 -10.94 16 14 H 0.09 2.16 6.46 -52.49 -0.34 1.82 16 15 C 0.07 1.71 5.26 -17.31 -0.09 1.62 16 16 N -0.79 -18.75 10.90 55.56 0.61 -18.14 16 17 Si 0.91 17.54 29.58 -169.99 -5.03 12.52 16 18 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 19 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 C -0.20 -4.21 7.94 -39.01 -0.31 -4.52 16 22 C 0.12 2.34 11.16 -17.64 -0.20 2.15 16 23 N -0.56 -10.89 10.37 -12.52 -0.13 -11.02 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.64 7.91 -51.93 -0.41 0.22 16 26 H 0.05 0.66 7.94 -51.93 -0.41 0.25 16 27 H 0.40 5.21 8.95 -40.82 -0.37 4.84 16 28 H 0.12 2.50 6.70 -52.49 -0.35 2.15 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 33 H 0.13 3.19 6.33 -52.48 -0.33 2.86 16 34 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 35 H 0.14 3.06 6.81 -52.49 -0.36 2.70 16 36 H 0.15 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 306.44 15.07 4.62 4.62 Total: -1.00 -28.03 306.44 -9.01 -37.03 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -4.24 Total: 11.67 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -4.39 Total: -14.36 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.03 Total: -51.48 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.03 -9.01 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244970503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.085 kcal (2) G-P(sol) polarization free energy of solvation -28.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds