Wall clock time and date at job start Mon Mar 30 2020 01:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39042 * 120.00035 * 2 1 4 4 C 1.38930 * 119.63777 * 0.25159 * 3 2 1 5 5 C 1.39710 * 118.91374 * 180.31938 * 4 3 2 6 6 C 1.47933 * 120.88595 * 179.71299 * 5 4 3 7 7 N 1.32539 * 119.98569 * 316.31233 * 6 5 4 8 8 C 1.31734 * 121.72875 * 180.02562 * 7 6 5 9 9 C 1.50699 * 119.24889 * 179.97438 * 8 7 6 10 10 C 1.38877 * 121.49841 * 0.26077 * 8 7 6 11 11 C 1.36886 * 119.78798 * 359.45978 * 10 8 7 12 12 C 1.41138 * 118.38614 * 0.52311 * 11 10 8 13 13 C 1.40910 * 120.71905 * 179.72925 * 12 11 10 14 14 H 1.07998 * 120.00416 * 151.69501 * 13 12 11 15 15 C 1.40114 * 119.99815 * 331.69073 * 13 12 11 16 16 N 1.30748 * 120.00002 * 348.25066 * 15 13 12 17 17 Si 1.86796 * 120.00062 * 168.23928 * 15 13 12 18 18 H 1.48500 * 109.47035 * 60.00511 * 17 15 13 19 19 H 1.48504 * 109.47293 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47208 * 300.00463 * 17 15 13 21 21 C 1.40218 * 118.21722 * 359.44160 * 5 4 3 22 22 C 1.37777 * 119.15415 * 0.27451 * 21 5 4 23 23 N 1.32016 * 121.01542 * 0.02562 * 22 21 5 24 24 H 1.08998 * 109.46848 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47041 * 300.00428 * 1 2 3 26 26 H 1.09000 * 109.46909 * 60.00028 * 1 2 3 27 27 H 0.97003 * 119.99572 * 179.97438 * 2 1 3 28 28 H 1.08001 * 120.53862 * 0.03312 * 4 3 2 29 29 H 1.09004 * 109.46924 * 90.00240 * 9 8 7 30 30 H 1.09000 * 109.47214 * 330.00268 * 9 8 7 31 31 H 1.08994 * 109.47144 * 209.99945 * 9 8 7 32 32 H 1.08004 * 120.10470 * 179.74929 * 10 8 7 33 33 H 1.08003 * 120.80903 * 180.26998 * 11 10 8 34 34 H 0.96999 * 119.99906 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.42189 * 180.25093 * 21 5 4 36 36 H 1.08003 * 119.48661 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2041 0.0000 4 6 1.4580 2.4029 0.0053 5 6 2.1718 3.6039 -0.0016 6 6 1.4684 4.9053 -0.0027 7 7 0.4197 5.0908 -0.7917 8 6 -0.2317 6.2354 -0.8206 9 6 -1.4165 6.3854 -1.7397 10 6 0.1523 7.3090 -0.0277 11 6 1.2237 7.1832 0.8149 12 6 1.9166 5.9538 0.8404 13 6 3.0298 5.7724 1.6850 14 1 3.2720 4.7871 2.0550 15 6 3.8226 6.8702 2.0447 16 7 3.6772 8.0125 1.4253 17 14 5.0871 6.7020 3.4092 18 1 6.0722 5.6524 3.0446 19 1 5.7893 7.9972 3.5958 20 1 4.4046 6.3230 4.6725 21 6 3.5726 3.5426 -0.0016 22 6 4.1906 2.3112 -0.0006 23 7 3.4844 1.1957 -0.0002 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.9500 -0.8401 0.0004 28 1 0.3780 2.4062 0.0100 29 1 -2.3238 6.0867 -1.2145 30 1 -1.2789 5.7522 -2.6162 31 1 -1.5039 7.4257 -2.0530 32 1 -0.3956 8.2387 -0.0723 33 1 1.5339 8.0060 1.4420 34 1 4.2258 8.7726 1.6746 35 1 4.1596 4.4491 -0.0027 36 1 5.2693 2.2577 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244970503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:22 Heat of formation + Delta-G solvation = 40.954119 kcal Electronic energy + Delta-G solvation = -19807.955545 eV Core-core repulsion = 16869.484867 eV Total energy + Delta-G solvation = -2938.470678 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15632 -40.07450 -36.67373 -36.11669 -34.44353 -32.76498 -31.55458 -30.79438 -29.52203 -26.99921 -26.45833 -24.72878 -23.24669 -22.58701 -21.83234 -19.30825 -18.48130 -17.61912 -17.33200 -16.46669 -16.28560 -15.83398 -15.54304 -15.46684 -15.27421 -14.88858 -14.68127 -14.16712 -14.02795 -13.55595 -13.47643 -13.20031 -13.03988 -12.90214 -12.76471 -12.64214 -12.47687 -12.19253 -11.74934 -11.21891 -11.05660 -10.63806 -10.36436 -10.05034 -9.95544 -9.23380 -8.70209 -8.52837 -6.41393 0.16281 0.59100 0.88128 1.22160 1.38593 1.49039 1.51758 2.16764 2.37146 2.69329 3.11020 3.59231 3.69855 3.93847 4.25001 4.36236 4.40004 4.50574 4.57477 4.62503 4.65717 4.67055 4.88829 4.91839 4.94800 4.99356 4.99439 5.09513 5.19538 5.30181 5.39111 5.69838 5.72798 5.83484 5.96962 6.05239 6.22101 6.47966 6.70844 6.74325 6.77331 7.35237 7.69374 8.21452 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.008104 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.261353 B = 3454.390654 C = 5196.827478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.729 5.729 3 C 0.386 3.614 4 C -0.236 4.236 5 C 0.079 3.921 6 C -0.010 4.010 7 N -0.463 5.463 8 C -0.017 4.017 9 C -0.069 4.069 10 C -0.144 4.144 11 C -0.146 4.146 12 C 0.058 3.942 13 C -0.454 4.454 14 H 0.083 0.917 15 C 0.040 3.960 16 N -0.814 5.814 17 Si 0.977 3.023 18 H -0.254 1.254 19 H -0.265 1.265 20 H -0.263 1.263 21 C -0.216 4.216 22 C 0.136 3.864 23 N -0.566 5.566 24 H 0.112 0.888 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.410 0.590 28 H 0.123 0.877 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.294 0.706 35 H 0.125 0.875 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 -6.982 -0.237 7.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.363 5.363 3 C 0.151 3.849 4 C -0.261 4.261 5 C 0.071 3.929 6 C -0.147 4.147 7 N -0.171 5.171 8 C -0.160 4.160 9 C -0.126 4.126 10 C -0.164 4.164 11 C -0.172 4.172 12 C 0.053 3.947 13 C -0.483 4.483 14 H 0.101 0.899 15 C -0.177 4.177 16 N -0.439 5.439 17 Si 0.797 3.203 18 H -0.178 1.178 19 H -0.189 1.189 20 H -0.187 1.187 21 C -0.240 4.240 22 C -0.019 4.019 23 N -0.285 5.285 24 H 0.130 0.870 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.246 0.754 28 H 0.141 0.859 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.641 -8.170 -0.795 8.623 hybrid contribution 0.523 1.696 1.071 2.073 sum -2.117 -6.474 0.276 6.817 Atomic orbital electron populations 1.21691 0.77810 1.04325 1.00887 1.44182 1.06388 1.04137 1.81636 1.18383 0.88387 0.86844 0.91328 1.21429 1.00372 0.91060 1.13250 1.18655 0.92938 0.90986 0.90339 1.19740 0.98764 0.95340 1.00888 1.66907 1.06143 1.24417 1.19668 1.21112 1.01337 0.90028 1.03530 1.20347 0.93271 1.02190 0.96796 1.21612 0.97795 0.99339 0.97691 1.21511 0.95472 0.98948 1.01231 1.18650 0.93013 0.91732 0.91320 1.19693 1.08425 0.95835 1.24325 0.89941 1.26751 0.99642 0.93619 0.97643 1.69757 1.35810 1.02935 1.35424 0.85302 0.77779 0.79244 0.77968 1.17780 1.18884 1.18740 1.22046 0.94166 0.99673 1.08099 1.22554 1.00366 0.85973 0.93037 1.67091 1.06056 1.32394 1.22969 0.86990 0.93567 0.93397 0.75420 0.85924 0.91283 0.92394 0.90391 0.85231 0.86243 0.89517 0.85672 0.80230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.10 9.92 127.77 1.27 3.37 16 2 N -0.73 -20.18 5.89 -366.66 -2.16 -22.34 16 3 C 0.39 14.25 7.65 132.99 1.02 15.27 16 4 C -0.24 -9.86 9.00 22.79 0.21 -9.65 16 5 C 0.08 3.73 5.27 -19.87 -0.10 3.62 16 6 C -0.01 -0.53 6.47 42.49 0.27 -0.26 16 7 N -0.46 -22.91 10.07 -171.10 -1.72 -24.64 16 8 C -0.02 -0.78 6.79 42.73 0.29 -0.49 16 9 C -0.07 -2.30 10.15 71.24 0.72 -1.57 16 10 C -0.14 -6.52 9.64 22.11 0.21 -6.31 16 11 C -0.15 -7.40 8.72 22.66 0.20 -7.20 16 12 C 0.06 3.05 5.56 -21.03 -0.12 2.94 16 13 C -0.45 -23.14 6.77 23.38 0.16 -22.98 16 14 H 0.08 4.18 6.46 -2.91 -0.02 4.16 16 15 C 0.04 1.90 5.26 85.31 0.45 2.35 16 16 N -0.81 -39.70 10.90 21.86 0.24 -39.46 16 17 Si 0.98 36.07 29.58 68.60 2.03 38.10 16 18 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 19 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 20 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 21 C -0.22 -9.37 7.94 22.64 0.18 -9.19 16 22 C 0.14 5.02 11.16 84.56 0.94 5.97 16 23 N -0.57 -21.12 10.37 -193.54 -2.01 -23.13 16 24 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 1.07 7.91 -2.39 -0.02 1.05 16 26 H 0.05 1.11 7.94 -2.39 -0.02 1.09 16 27 H 0.41 9.58 8.95 -92.71 -0.83 8.75 16 28 H 0.12 5.03 6.70 -2.91 -0.02 5.01 16 29 H 0.07 2.06 8.14 -2.38 -0.02 2.05 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 32 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 33 H 0.12 6.16 6.33 -2.91 -0.02 6.14 16 34 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 35 H 0.13 5.72 6.81 -2.91 -0.02 5.70 16 36 H 0.18 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -62.02 306.44 2.36 -59.66 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.28 Total: 35.95 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 5.70 Total: -24.15 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -5.65 Total: -109.57 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Total: -62.02 2.36 -59.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244970503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.615 kcal (2) G-P(sol) polarization free energy of solvation -62.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds