Wall clock time and date at job start Mon Mar 30 2020 00:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46837 * 2 1 4 4 C 1.35692 * 116.99666 * 179.97438 * 3 2 1 5 5 C 1.38710 * 119.62915 * 179.97438 * 4 3 2 6 6 C 1.39494 * 118.97380 * 180.02562 * 5 4 3 7 7 C 1.48402 * 120.87284 * 180.02562 * 6 5 4 8 8 C 1.39722 * 120.00261 * 359.71027 * 7 6 5 9 9 C 1.38384 * 120.37779 * 179.71606 * 8 7 6 10 10 C 1.37720 * 120.38507 * 0.55957 * 9 8 7 11 11 C 1.40748 * 119.98485 * 359.71485 * 10 9 8 12 12 C 1.41429 * 120.18176 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99557 * 154.80322 * 12 11 10 14 14 C 1.39932 * 120.00410 * 334.79893 * 12 11 10 15 15 N 1.30827 * 119.99683 * 342.74202 * 14 12 11 16 16 Si 1.86794 * 120.00399 * 162.74465 * 14 12 11 17 17 H 1.48503 * 109.47215 * 59.99775 * 16 14 12 18 18 H 1.48496 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47011 * 300.00095 * 16 14 12 20 20 C 1.38741 * 119.99547 * 179.97438 * 7 6 5 21 21 C 1.39917 * 118.25044 * 359.97438 * 6 5 4 22 22 C 1.37824 * 119.15662 * 359.97438 * 21 6 5 23 23 N 1.32017 * 120.95297 * 0.02571 * 22 21 6 24 24 H 1.08995 * 109.47172 * 59.99963 * 1 2 3 25 25 H 1.08995 * 109.46715 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46943 * 299.99929 * 1 2 3 27 27 H 1.08998 * 109.46943 * 240.00071 * 2 1 3 28 28 H 1.08995 * 109.47172 * 120.00037 * 2 1 3 29 29 H 1.08005 * 120.51164 * 0.02831 * 5 4 3 30 30 H 1.08003 * 119.80569 * 359.97046 * 8 7 6 31 31 H 1.08003 * 119.80762 * 180.25019 * 9 8 7 32 32 H 1.08001 * 120.00617 * 179.69850 * 10 9 8 33 33 H 0.96999 * 120.00077 * 180.02562 * 15 14 12 34 34 H 1.08003 * 120.19314 * 0.02562 * 20 7 6 35 35 H 1.08001 * 120.41787 * 180.27419 * 21 6 5 36 36 H 1.07994 * 119.52472 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 0.0005 5 6 3.8734 2.8103 0.0000 6 6 5.2584 2.9772 0.0001 7 6 5.8620 4.3329 0.0001 8 6 5.0408 5.4633 -0.0060 9 6 5.5953 6.7312 -0.0001 10 6 6.9629 6.8934 0.0002 11 6 7.8050 5.7656 0.0006 12 6 9.2100 5.9273 0.0016 13 1 9.8429 5.1481 0.4001 14 6 9.7801 7.0966 -0.5139 15 7 9.0765 7.8803 -1.2900 16 14 11.5458 7.5386 -0.0941 17 1 12.4515 6.4601 -0.5651 18 1 11.9080 8.8157 -0.7596 19 1 11.6814 7.6916 1.3768 20 6 7.2418 4.4778 0.0006 21 6 6.0634 1.8328 0.0011 22 6 5.4652 0.5911 0.0027 23 7 4.1506 0.4707 0.0026 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2176 3.6684 -0.0003 30 1 3.9671 5.3468 -0.0112 31 1 4.9518 7.5986 -0.0008 32 1 7.3891 7.8857 -0.0001 33 1 9.4717 8.6907 -1.6477 34 1 7.8795 3.6062 0.0006 35 1 7.1397 1.9214 0.0056 36 1 6.0809 -0.2962 0.0031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245267376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:21 Heat of formation + Delta-G solvation = 4.084814 kcal Electronic energy + Delta-G solvation = -18926.434906 eV Core-core repulsion = 15954.072704 eV Total energy + Delta-G solvation = -2972.362202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29853 -38.19417 -37.19495 -34.06062 -32.42222 -32.04750 -30.23160 -29.45739 -28.54602 -25.43374 -24.06487 -23.06810 -22.38833 -20.49744 -20.32294 -18.20864 -16.84828 -16.34872 -16.16072 -15.99276 -15.24238 -14.44141 -14.30048 -13.93595 -13.83228 -13.52917 -13.15388 -12.82537 -12.57066 -12.38922 -12.05984 -11.88277 -11.72982 -11.49186 -11.29737 -11.15830 -10.75337 -10.66581 -10.54757 -9.89871 -9.62525 -9.51085 -9.32256 -9.15522 -8.23147 -7.60687 -7.25102 -6.83487 -4.45614 1.30413 1.54169 2.73039 3.00210 3.03207 3.05505 3.17792 3.18641 3.87780 4.18666 4.55750 4.60457 4.94585 4.99770 5.17531 5.25558 5.39409 5.47899 5.55883 5.59028 5.73902 5.75028 5.91872 5.94683 6.16451 6.31098 6.36461 6.58252 6.70711 6.81791 6.95918 7.12691 7.22908 7.42722 7.49992 7.71260 7.89744 7.92814 8.13469 8.14755 8.50410 8.78490 8.82695 10.11915 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041341 B = 0.003653 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.133749 B = 7663.445659 C = 8249.148866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.068 3.932 3 O -0.311 6.311 4 C 0.317 3.683 5 C -0.195 4.195 6 C 0.067 3.933 7 C -0.054 4.054 8 C -0.210 4.210 9 C -0.110 4.110 10 C -0.146 4.146 11 C 0.104 3.896 12 C -0.464 4.464 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.795 5.795 16 Si 0.909 3.091 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.191 4.191 21 C -0.208 4.208 22 C 0.132 3.868 23 N -0.559 5.559 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.140 0.860 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.282 0.718 34 H 0.100 0.900 35 H 0.140 0.860 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 -9.349 1.736 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 O -0.219 6.219 4 C 0.139 3.861 5 C -0.215 4.215 6 C 0.059 3.941 7 C -0.054 4.054 8 C -0.229 4.229 9 C -0.128 4.128 10 C -0.166 4.166 11 C 0.102 3.898 12 C -0.494 4.494 13 H 0.097 0.903 14 C -0.142 4.142 15 N -0.420 5.420 16 Si 0.734 3.266 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.211 4.211 21 C -0.229 4.229 22 C -0.022 4.022 23 N -0.284 5.284 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.157 0.843 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.501 -9.783 1.583 13.057 hybrid contribution 1.231 0.873 0.025 1.510 sum -7.270 -8.910 1.608 11.611 Atomic orbital electron populations 1.21814 0.93423 1.02551 1.03224 1.22499 0.94345 0.81681 1.02229 1.86217 1.17387 1.30016 1.88310 1.19607 0.83535 0.89927 0.93066 1.21106 0.95375 0.95421 1.09616 1.19305 0.91334 0.94147 0.89270 1.18191 0.93638 0.89201 1.04339 1.20473 0.97081 0.92173 1.13212 1.20655 0.95410 0.95360 1.01401 1.21491 0.91757 0.99603 1.03730 1.17543 0.93562 0.90372 0.88335 1.19525 0.91830 1.02121 1.35903 0.90324 1.25896 1.00359 0.95392 0.92524 1.69795 1.38541 1.11637 1.22054 0.86347 0.81905 0.78438 0.79943 1.18964 1.20320 1.18789 1.21115 0.92186 0.96978 1.10825 1.22137 1.01789 0.92435 1.06502 1.22175 0.88946 0.97056 0.94002 1.67188 1.06732 1.33120 1.21318 0.91747 0.90590 0.91750 0.91928 0.91929 0.84240 0.88752 0.88871 0.86162 0.90698 0.88192 0.84261 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.07 0.82 6.03 37.16 0.22 1.04 16 3 O -0.31 -4.84 10.11 -18.78 -0.19 -5.03 16 4 C 0.32 5.43 7.48 -17.18 -0.13 5.30 16 5 C -0.19 -3.52 9.43 -38.94 -0.37 -3.88 16 6 C 0.07 1.28 5.91 -104.61 -0.62 0.66 16 7 C -0.05 -1.18 5.87 -104.97 -0.62 -1.79 16 8 C -0.21 -4.57 9.46 -38.97 -0.37 -4.94 16 9 C -0.11 -2.49 10.01 -39.72 -0.40 -2.89 16 10 C -0.15 -3.67 8.69 -38.82 -0.34 -4.01 16 11 C 0.10 2.68 5.56 -106.86 -0.59 2.08 16 12 C -0.46 -11.87 9.05 -37.73 -0.34 -12.21 16 13 H 0.08 1.92 7.90 -52.49 -0.41 1.50 16 14 C 0.08 1.85 5.14 -17.35 -0.09 1.76 16 15 N -0.80 -19.99 10.96 55.55 0.61 -19.38 16 16 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 20 C -0.19 -4.49 9.19 -38.52 -0.35 -4.85 16 21 C -0.21 -3.53 9.49 -39.10 -0.37 -3.90 16 22 C 0.13 2.00 11.16 -17.62 -0.20 1.81 16 23 N -0.56 -9.17 9.20 -13.41 -0.12 -9.30 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 28 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.14 2.40 6.32 -52.48 -0.33 2.07 16 30 H 0.09 1.83 6.27 -52.48 -0.33 1.50 16 31 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.12 3.10 6.18 -52.49 -0.32 2.78 16 33 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 34 H 0.10 2.17 6.28 -52.48 -0.33 1.84 16 35 H 0.14 2.21 6.33 -52.49 -0.33 1.88 16 36 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -27.47 308.26 -8.41 -35.88 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.15 Total: 6.86 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -4.17 Total: -26.79 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 0.49 Total: -28.67 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.19 Total: -5.03 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.47 -8.41 -35.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245267376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.968 kcal (2) G-P(sol) polarization free energy of solvation -27.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds