Wall clock time and date at job start Mon Mar 30 2020 00:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.46837 * 2 1 4 4 C 1.35692 * 116.99666 * 179.97438 * 3 2 1 5 5 C 1.38710 * 119.62915 * 179.97438 * 4 3 2 6 6 C 1.39494 * 118.97380 * 180.02562 * 5 4 3 7 7 C 1.48402 * 120.87284 * 180.02562 * 6 5 4 8 8 C 1.39722 * 120.00261 * 359.71027 * 7 6 5 9 9 C 1.38384 * 120.37779 * 179.71606 * 8 7 6 10 10 C 1.37720 * 120.38507 * 0.55957 * 9 8 7 11 11 C 1.40748 * 119.98485 * 359.71485 * 10 9 8 12 12 C 1.41429 * 120.18176 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99557 * 154.80322 * 12 11 10 14 14 C 1.39932 * 120.00410 * 334.79893 * 12 11 10 15 15 N 1.30827 * 119.99683 * 342.74202 * 14 12 11 16 16 Si 1.86794 * 120.00399 * 162.74465 * 14 12 11 17 17 H 1.48503 * 109.47215 * 59.99775 * 16 14 12 18 18 H 1.48496 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47011 * 300.00095 * 16 14 12 20 20 C 1.38741 * 119.99547 * 179.97438 * 7 6 5 21 21 C 1.39917 * 118.25044 * 359.97438 * 6 5 4 22 22 C 1.37824 * 119.15662 * 359.97438 * 21 6 5 23 23 N 1.32017 * 120.95297 * 0.02571 * 22 21 6 24 24 H 1.08995 * 109.47172 * 59.99963 * 1 2 3 25 25 H 1.08995 * 109.46715 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46943 * 299.99929 * 1 2 3 27 27 H 1.08998 * 109.46943 * 240.00071 * 2 1 3 28 28 H 1.08995 * 109.47172 * 120.00037 * 2 1 3 29 29 H 1.08005 * 120.51164 * 0.02831 * 5 4 3 30 30 H 1.08003 * 119.80569 * 359.97046 * 8 7 6 31 31 H 1.08003 * 119.80762 * 180.25019 * 9 8 7 32 32 H 1.08001 * 120.00617 * 179.69850 * 10 9 8 33 33 H 0.96999 * 120.00077 * 180.02562 * 15 14 12 34 34 H 1.08003 * 120.19314 * 0.02562 * 20 7 6 35 35 H 1.08001 * 120.41787 * 180.27419 * 21 6 5 36 36 H 1.07994 * 119.52472 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 0.0005 5 6 3.8734 2.8103 0.0000 6 6 5.2584 2.9772 0.0001 7 6 5.8620 4.3329 0.0001 8 6 5.0408 5.4633 -0.0060 9 6 5.5953 6.7312 -0.0001 10 6 6.9629 6.8934 0.0002 11 6 7.8050 5.7656 0.0006 12 6 9.2100 5.9273 0.0016 13 1 9.8429 5.1481 0.4001 14 6 9.7801 7.0966 -0.5139 15 7 9.0765 7.8803 -1.2900 16 14 11.5458 7.5386 -0.0941 17 1 12.4515 6.4601 -0.5651 18 1 11.9080 8.8157 -0.7596 19 1 11.6814 7.6916 1.3768 20 6 7.2418 4.4778 0.0006 21 6 6.0634 1.8328 0.0011 22 6 5.4652 0.5911 0.0027 23 7 4.1506 0.4707 0.0026 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2176 3.6684 -0.0003 30 1 3.9671 5.3468 -0.0112 31 1 4.9518 7.5986 -0.0008 32 1 7.3891 7.8857 -0.0001 33 1 9.4717 8.6907 -1.6477 34 1 7.8795 3.6062 0.0006 35 1 7.1397 1.9214 0.0056 36 1 6.0809 -0.2962 0.0031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245267376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:21 Heat of formation + Delta-G solvation = -10.396805 kcal Electronic energy + Delta-G solvation = -18927.062876 eV Core-core repulsion = 15954.072704 eV Total energy + Delta-G solvation = -2972.990172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.59765 -39.67894 -38.66726 -35.80312 -33.98426 -33.03390 -31.91877 -30.77625 -30.18265 -27.25402 -25.32433 -24.44541 -23.60007 -22.21700 -21.87068 -19.69482 -18.41381 -17.78200 -17.47401 -17.24566 -16.89951 -16.04929 -15.75818 -15.35184 -14.94512 -14.91571 -14.71484 -14.40037 -13.72331 -13.68421 -13.47320 -13.29934 -13.19497 -12.88480 -12.78959 -12.49032 -12.40079 -12.14328 -11.69904 -11.66041 -11.27666 -11.23011 -10.88495 -10.64480 -9.50711 -9.44474 -8.98947 -8.64472 -6.36842 -0.17847 0.23535 0.96513 1.31202 1.40019 1.50754 1.57011 2.04378 2.21287 2.66059 2.94628 3.36157 3.71663 3.77410 4.06275 4.11076 4.13304 4.17182 4.25988 4.48097 4.49034 4.51520 4.83221 4.84569 4.88774 4.96878 5.01124 5.08778 5.13033 5.21524 5.29780 5.47171 5.50077 5.65504 5.93750 6.04095 6.10982 6.28842 6.31211 6.64111 6.85241 6.91248 6.96941 8.33098 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041341 B = 0.003653 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.133749 B = 7663.445659 C = 8249.148866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.320 6.320 4 C 0.313 3.687 5 C -0.202 4.202 6 C 0.043 3.957 7 C -0.051 4.051 8 C -0.215 4.215 9 C -0.111 4.111 10 C -0.176 4.176 11 C 0.076 3.924 12 C -0.499 4.499 13 H 0.079 0.921 14 C 0.036 3.964 15 N -0.827 5.827 16 Si 0.982 3.018 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.261 1.261 20 C -0.206 4.206 21 C -0.213 4.213 22 C 0.144 3.856 23 N -0.557 5.557 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.143 0.857 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.288 0.712 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.459 -11.124 1.923 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 O -0.228 6.228 4 C 0.135 3.865 5 C -0.222 4.222 6 C 0.035 3.965 7 C -0.051 4.051 8 C -0.234 4.234 9 C -0.129 4.129 10 C -0.196 4.196 11 C 0.074 3.926 12 C -0.529 4.529 13 H 0.097 0.903 14 C -0.179 4.179 15 N -0.453 5.453 16 Si 0.802 3.198 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.185 1.185 20 C -0.226 4.226 21 C -0.233 4.233 22 C -0.011 4.011 23 N -0.282 5.282 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.160 0.840 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.164 0.836 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.075 -11.567 1.770 14.809 hybrid contribution 1.218 1.255 -0.041 1.749 sum -7.858 -10.312 1.729 13.079 Atomic orbital electron populations 1.21837 0.90982 1.04310 1.03252 1.22806 0.96258 0.80047 1.02286 1.86220 1.16447 1.32245 1.87923 1.19692 0.84403 0.89749 0.92691 1.21136 0.94979 0.96250 1.09860 1.19244 0.92212 0.93433 0.91569 1.18475 0.93217 0.90964 1.02484 1.20816 0.98470 0.91794 1.12315 1.20931 0.94843 0.96819 1.00341 1.21457 0.92925 0.98893 1.06303 1.17904 0.94191 0.91469 0.89047 1.19800 0.92223 1.03393 1.37445 0.90253 1.26740 1.04646 0.94762 0.91766 1.69858 1.40501 1.12174 1.22772 0.85255 0.76454 0.78436 0.79609 1.18276 1.19365 1.18526 1.21289 0.93262 0.96641 1.11410 1.22307 1.02113 0.92543 1.06296 1.22794 0.88796 0.97746 0.91725 1.67328 1.07204 1.32745 1.20885 0.91744 0.87946 0.91687 0.91874 0.91798 0.83975 0.86270 0.86567 0.87763 0.90092 0.87156 0.83580 0.78720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.06 1.33 6.03 71.98 0.43 1.76 16 3 O -0.32 -9.39 10.11 -90.11 -0.91 -10.31 16 4 C 0.31 10.17 7.48 84.74 0.63 10.81 16 5 C -0.20 -7.06 9.43 22.69 0.21 -6.84 16 6 C 0.04 1.61 5.91 -19.86 -0.12 1.49 16 7 C -0.05 -2.26 5.87 -20.09 -0.12 -2.38 16 8 C -0.21 -9.31 9.46 22.66 0.21 -9.10 16 9 C -0.11 -5.10 10.01 22.18 0.22 -4.88 16 10 C -0.18 -9.17 8.69 22.76 0.20 -8.97 16 11 C 0.08 4.05 5.56 -21.32 -0.12 3.93 16 12 C -0.50 -26.36 9.05 23.47 0.21 -26.15 16 13 H 0.08 3.99 7.90 -2.91 -0.02 3.97 16 14 C 0.04 1.77 5.14 85.25 0.44 2.21 16 15 N -0.83 -42.79 10.96 21.82 0.24 -42.55 16 16 Si 0.98 37.51 29.59 68.60 2.03 39.54 16 17 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 20 C -0.21 -9.90 9.19 22.95 0.21 -9.69 16 21 C -0.21 -6.86 9.49 22.58 0.21 -6.64 16 22 C 0.14 3.94 11.16 84.57 0.94 4.88 16 23 N -0.56 -16.86 9.20 -309.19 -2.84 -19.71 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 28 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 29 H 0.14 4.75 6.32 -2.91 -0.02 4.73 16 30 H 0.12 4.49 6.27 -2.91 -0.02 4.47 16 31 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 32 H 0.10 5.65 6.18 -2.91 -0.02 5.64 16 33 H 0.29 13.52 8.30 -92.71 -0.77 12.76 16 34 H 0.11 4.87 6.28 -2.91 -0.02 4.85 16 35 H 0.15 4.45 6.33 -2.91 -0.02 4.43 16 36 H 0.20 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -60.24 308.26 3.93 -56.31 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 1.09 Total: 27.78 kcal Atomic # 6 Polarization: -55.39 SS G_CDS: 4.32 Total: -51.07 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -2.60 Total: -62.26 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.91 Total: -10.31 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -60.24 3.93 -56.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245267376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.916 kcal (2) G-P(sol) polarization free energy of solvation -60.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds