Wall clock time and date at job start Mon Mar 30 2020 00:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47166 * 2 1 4 4 C 1.35685 * 117.00062 * 180.02562 * 3 2 1 5 5 C 1.38673 * 119.61503 * 180.02562 * 4 3 2 6 6 C 1.39736 * 118.94225 * 179.97438 * 5 4 3 7 7 C 1.48038 * 120.89840 * 179.97438 * 6 5 4 8 8 C 1.39908 * 119.87887 * 180.02562 * 7 6 5 9 9 C 1.36276 * 120.12269 * 180.02562 * 8 7 6 10 10 C 1.40917 * 119.87515 * 359.97438 * 9 8 7 11 11 C 1.41056 * 120.12072 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99799 * 330.28933 * 11 10 9 13 13 C 1.40056 * 119.99894 * 150.00751 * 11 10 9 14 14 N 1.30767 * 119.99604 * 161.85036 * 13 11 10 15 15 Si 1.86794 * 120.00448 * 341.84868 * 13 11 10 16 16 H 1.48495 * 109.47406 * 95.39489 * 15 13 11 17 17 H 1.48500 * 109.47128 * 215.40031 * 15 13 11 18 18 H 1.48506 * 109.46752 * 335.39754 * 15 13 11 19 19 C 1.40915 * 119.76061 * 0.25597 * 10 9 8 20 20 C 1.36276 * 119.87262 * 359.50495 * 19 10 9 21 21 C 1.40135 * 118.20562 * 0.25359 * 6 5 4 22 22 C 1.37793 * 119.12443 * 359.51835 * 21 6 5 23 23 N 1.32022 * 120.97532 * 0.49062 * 22 21 6 24 24 H 1.09003 * 109.47136 * 299.99622 * 1 2 3 25 25 H 1.08997 * 109.47366 * 59.99931 * 1 2 3 26 26 H 1.09002 * 109.46483 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47085 * 240.00064 * 2 1 3 28 28 H 1.09004 * 109.47035 * 119.99867 * 2 1 3 29 29 H 1.07998 * 120.53241 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.93706 * 0.02617 * 8 7 6 31 31 H 1.08000 * 120.06407 * 179.97438 * 9 8 7 32 32 H 0.96999 * 119.99645 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.05771 * 179.74564 * 19 10 9 34 34 H 1.08004 * 119.93837 * 180.22799 * 20 19 10 35 35 H 1.08004 * 120.44044 * 179.74203 * 21 6 5 36 36 H 1.07997 * 119.50672 * 180.23085 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5250 -0.0005 5 6 3.8730 2.8100 0.0000 6 6 5.2603 2.9768 -0.0001 7 6 5.8634 4.3288 -0.0001 8 6 7.2553 4.4711 -0.0006 9 6 7.8158 5.7132 -0.0002 10 6 6.9907 6.8556 0.0004 11 6 7.5653 8.1438 0.0014 12 1 8.5271 8.3057 0.4654 13 6 6.8914 9.2117 -0.6044 14 7 7.2209 10.4429 -0.3119 15 14 5.5220 8.8773 -1.8300 16 1 4.2118 8.9203 -1.1325 17 1 5.5492 9.9102 -2.8966 18 1 5.7166 7.5353 -2.4355 19 6 5.5895 6.7064 0.0059 20 6 5.0396 5.4595 0.0004 21 6 6.0653 1.8298 -0.0061 22 6 5.4654 0.5893 -0.0016 23 7 4.1505 0.4705 -0.0014 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.2173 3.6682 0.0012 30 1 7.8866 3.5948 -0.0015 31 1 8.8903 5.8219 -0.0002 32 1 6.7539 11.1825 -0.7312 33 1 4.9526 7.5786 0.0104 34 1 3.9658 5.3439 0.0009 35 1 7.1419 1.9168 -0.0105 36 1 6.0799 -0.2987 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245267622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:23 Heat of formation + Delta-G solvation = 3.557444 kcal Electronic energy + Delta-G solvation = -19010.732192 eV Core-core repulsion = 16038.347122 eV Total energy + Delta-G solvation = -2972.385071 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.22180 -38.34166 -37.37168 -34.18138 -32.59722 -32.02224 -30.35736 -29.70176 -29.33508 -25.71262 -23.59568 -23.28076 -22.07607 -21.11087 -20.26002 -17.97430 -17.72438 -16.53892 -16.12715 -15.78109 -15.42329 -14.78167 -14.09421 -13.78996 -13.76396 -13.65500 -13.50702 -12.82184 -12.74331 -12.51341 -12.42825 -12.14329 -11.87751 -11.58729 -11.40379 -11.09058 -10.95623 -10.67857 -10.42638 -10.14092 -9.80751 -9.52676 -9.27634 -9.20173 -8.19998 -7.98843 -7.47110 -7.24306 -4.69857 1.31354 1.59675 2.60710 2.66685 2.99420 3.10670 3.19255 3.22939 3.79802 4.09183 4.48521 4.61398 4.95719 5.01675 5.23267 5.26515 5.27574 5.44101 5.50432 5.58534 5.71735 5.76177 5.83335 5.91354 5.99150 6.18319 6.31496 6.39229 6.49291 6.62011 6.81211 6.86940 6.92868 7.26555 7.45216 7.55905 7.63630 7.69113 7.88797 8.07915 8.23216 8.41369 8.52064 9.75453 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.004230 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.299525 B = 6618.026942 C = 7429.092272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.069 3.931 3 O -0.312 6.312 4 C 0.323 3.677 5 C -0.220 4.220 6 C 0.093 3.907 7 C -0.219 4.219 8 C -0.046 4.046 9 C -0.215 4.215 10 C 0.101 3.899 11 C -0.422 4.422 12 H 0.096 0.904 13 C 0.081 3.919 14 N -0.787 5.787 15 Si 0.915 3.085 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.241 1.241 19 C -0.244 4.244 20 C -0.039 4.039 21 C -0.232 4.232 22 C 0.137 3.863 23 N -0.573 5.573 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.291 0.709 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.743 -13.098 -0.893 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 O -0.221 6.221 4 C 0.146 3.854 5 C -0.241 4.241 6 C 0.086 3.914 7 C -0.220 4.220 8 C -0.065 4.065 9 C -0.234 4.234 10 C 0.097 3.903 11 C -0.449 4.449 12 H 0.114 0.886 13 C -0.141 4.141 14 N -0.409 5.409 15 Si 0.741 3.259 16 H -0.192 1.192 17 H -0.214 1.214 18 H -0.164 1.164 19 C -0.263 4.263 20 C -0.058 4.058 21 C -0.253 4.253 22 C -0.016 4.016 23 N -0.298 5.298 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.319 -13.430 -0.894 15.321 hybrid contribution -0.104 0.714 -0.450 0.851 sum -7.423 -12.716 -1.345 14.785 Atomic orbital electron populations 1.21817 0.93505 1.02505 1.03201 1.22475 0.94264 0.81788 1.02157 1.86212 1.17631 1.29913 1.88313 1.19569 0.83368 0.89961 0.92500 1.21002 0.95293 0.95210 1.12583 1.19047 0.91095 0.93562 0.87656 1.17890 0.93055 0.89564 1.21513 1.20486 0.93199 0.96552 0.96221 1.20725 0.98437 0.91934 1.12319 1.17853 0.91400 0.93373 0.87655 1.19721 1.05747 0.90455 1.28941 0.88586 1.26351 0.97075 0.94165 0.96530 1.69659 1.36861 1.00192 1.34172 0.86226 0.79966 0.80166 0.79573 1.19192 1.21431 1.16382 1.20736 0.95165 0.95961 1.14458 1.20490 0.97610 0.92323 0.95351 1.21974 1.01095 0.92566 1.09619 1.22073 0.89018 0.96873 0.93672 1.67159 1.06646 1.33020 1.22973 0.91766 0.91783 0.90631 0.92004 0.91992 0.84779 0.88128 0.87738 0.89815 0.87878 0.88221 0.85005 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 37.16 0.38 -1.02 16 2 C 0.07 0.84 6.03 37.16 0.22 1.07 16 3 O -0.31 -4.95 10.11 -18.76 -0.19 -5.14 16 4 C 0.32 5.59 7.48 -17.19 -0.13 5.47 16 5 C -0.22 -3.97 9.43 -38.86 -0.37 -4.34 16 6 C 0.09 1.73 5.91 -104.61 -0.62 1.11 16 7 C -0.22 -4.48 5.90 -104.63 -0.62 -5.10 16 8 C -0.05 -0.92 9.38 -39.66 -0.37 -1.30 16 9 C -0.21 -4.70 9.73 -39.27 -0.38 -5.08 16 10 C 0.10 2.41 5.10 -106.80 -0.54 1.87 16 11 C -0.42 -10.66 9.55 -37.83 -0.36 -11.02 16 12 H 0.10 2.51 8.06 -52.48 -0.42 2.09 16 13 C 0.08 1.99 5.40 -17.32 -0.09 1.89 16 14 N -0.79 -19.56 13.92 55.55 0.77 -18.79 16 15 Si 0.92 19.66 24.52 -169.99 -4.17 15.49 16 16 H -0.27 -5.55 6.71 56.52 0.38 -5.18 16 17 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.24 -5.36 6.87 56.52 0.39 -4.97 16 19 C -0.24 -5.62 7.11 -39.28 -0.28 -5.90 16 20 C -0.04 -0.83 9.38 -39.67 -0.37 -1.21 16 21 C -0.23 -3.72 9.50 -39.03 -0.37 -4.09 16 22 C 0.14 2.04 11.16 -17.63 -0.20 1.84 16 23 N -0.57 -9.43 9.19 -13.43 -0.12 -9.55 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 28 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.13 2.33 6.31 -52.49 -0.33 2.00 16 30 H 0.10 1.71 6.26 -52.49 -0.33 1.38 16 31 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 33 H 0.10 2.35 4.77 -52.49 -0.25 2.10 16 34 H 0.10 1.89 6.26 -52.48 -0.33 1.57 16 35 H 0.13 1.87 6.31 -52.48 -0.33 1.54 16 36 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -26.68 302.81 -7.36 -34.04 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.12 Total: 5.20 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -4.10 Total: -25.80 kcal Atomic # 7 Polarization: -28.99 SS G_CDS: 0.65 Total: -28.34 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.19 Total: -5.14 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.17 Total: 15.49 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.68 -7.36 -34.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245267622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.594 kcal (2) G-P(sol) polarization free energy of solvation -26.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds