Wall clock time and date at job start Mon Mar 30 2020 00:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47166 * 2 1 4 4 C 1.35685 * 117.00062 * 180.02562 * 3 2 1 5 5 C 1.38673 * 119.61503 * 180.02562 * 4 3 2 6 6 C 1.39736 * 118.94225 * 179.97438 * 5 4 3 7 7 C 1.48038 * 120.89840 * 179.97438 * 6 5 4 8 8 C 1.39908 * 119.87887 * 180.02562 * 7 6 5 9 9 C 1.36276 * 120.12269 * 180.02562 * 8 7 6 10 10 C 1.40917 * 119.87515 * 359.97438 * 9 8 7 11 11 C 1.41056 * 120.12072 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99799 * 330.28933 * 11 10 9 13 13 C 1.40056 * 119.99894 * 150.00751 * 11 10 9 14 14 N 1.30767 * 119.99604 * 161.85036 * 13 11 10 15 15 Si 1.86794 * 120.00448 * 341.84868 * 13 11 10 16 16 H 1.48495 * 109.47406 * 95.39489 * 15 13 11 17 17 H 1.48500 * 109.47128 * 215.40031 * 15 13 11 18 18 H 1.48506 * 109.46752 * 335.39754 * 15 13 11 19 19 C 1.40915 * 119.76061 * 0.25597 * 10 9 8 20 20 C 1.36276 * 119.87262 * 359.50495 * 19 10 9 21 21 C 1.40135 * 118.20562 * 0.25359 * 6 5 4 22 22 C 1.37793 * 119.12443 * 359.51835 * 21 6 5 23 23 N 1.32022 * 120.97532 * 0.49062 * 22 21 6 24 24 H 1.09003 * 109.47136 * 299.99622 * 1 2 3 25 25 H 1.08997 * 109.47366 * 59.99931 * 1 2 3 26 26 H 1.09002 * 109.46483 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47085 * 240.00064 * 2 1 3 28 28 H 1.09004 * 109.47035 * 119.99867 * 2 1 3 29 29 H 1.07998 * 120.53241 * 0.02562 * 5 4 3 30 30 H 1.08001 * 119.93706 * 0.02617 * 8 7 6 31 31 H 1.08000 * 120.06407 * 179.97438 * 9 8 7 32 32 H 0.96999 * 119.99645 * 180.02562 * 14 13 11 33 33 H 1.08002 * 120.05771 * 179.74564 * 19 10 9 34 34 H 1.08004 * 119.93837 * 180.22799 * 20 19 10 35 35 H 1.08004 * 120.44044 * 179.74203 * 21 6 5 36 36 H 1.07997 * 119.50672 * 180.23085 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5250 -0.0005 5 6 3.8730 2.8100 0.0000 6 6 5.2603 2.9768 -0.0001 7 6 5.8634 4.3288 -0.0001 8 6 7.2553 4.4711 -0.0006 9 6 7.8158 5.7132 -0.0002 10 6 6.9907 6.8556 0.0004 11 6 7.5653 8.1438 0.0014 12 1 8.5271 8.3057 0.4654 13 6 6.8914 9.2117 -0.6044 14 7 7.2209 10.4429 -0.3119 15 14 5.5220 8.8773 -1.8300 16 1 4.2118 8.9203 -1.1325 17 1 5.5492 9.9102 -2.8966 18 1 5.7166 7.5353 -2.4355 19 6 5.5895 6.7064 0.0059 20 6 5.0396 5.4595 0.0004 21 6 6.0653 1.8298 -0.0061 22 6 5.4654 0.5893 -0.0016 23 7 4.1505 0.4705 -0.0014 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.2173 3.6682 0.0012 30 1 7.8866 3.5948 -0.0015 31 1 8.8903 5.8219 -0.0002 32 1 6.7539 11.1825 -0.7312 33 1 4.9526 7.5786 0.0104 34 1 3.9658 5.3439 0.0009 35 1 7.1419 1.9168 -0.0105 36 1 6.0799 -0.2987 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245267622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:23 Heat of formation + Delta-G solvation = -11.651745 kcal Electronic energy + Delta-G solvation = -19011.391712 eV Core-core repulsion = 16038.347122 eV Total energy + Delta-G solvation = -2973.044591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51576 -39.87592 -38.72177 -35.87801 -34.15465 -33.01755 -31.91892 -31.31691 -30.61936 -27.34149 -24.80195 -24.65671 -23.40403 -22.67574 -21.77910 -19.51758 -19.27421 -17.91453 -17.22933 -17.21798 -16.94797 -16.31006 -15.57401 -15.34736 -15.13569 -14.90007 -14.79147 -14.47948 -14.15793 -13.96870 -13.64349 -13.37820 -13.22593 -12.90179 -12.79052 -12.64910 -12.42025 -12.08181 -11.84940 -11.68387 -11.51630 -11.13929 -10.85892 -10.55350 -9.67928 -9.45527 -9.14392 -9.02818 -6.55139 -0.15394 0.31621 0.89551 1.02233 1.26028 1.41220 1.47255 2.06770 2.10040 2.49186 2.97795 3.44251 3.52040 3.85898 4.06929 4.10452 4.17209 4.17966 4.24428 4.31753 4.45874 4.48355 4.67527 4.83740 4.86424 4.92506 4.94905 4.95823 5.00553 5.20234 5.21947 5.36615 5.50665 5.56171 5.78864 5.84489 6.01438 6.14074 6.29326 6.35029 6.62691 6.73238 6.95702 8.03793 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.004230 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.299525 B = 6618.026942 C = 7429.092272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 O -0.324 6.324 4 C 0.314 3.686 5 C -0.228 4.228 6 C 0.070 3.930 7 C -0.203 4.203 8 C -0.045 4.045 9 C -0.225 4.225 10 C 0.085 3.915 11 C -0.467 4.467 12 H 0.067 0.933 13 C 0.052 3.948 14 N -0.830 5.830 15 Si 0.962 3.038 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.254 1.254 19 C -0.256 4.256 20 C -0.052 4.052 21 C -0.225 4.225 22 C 0.143 3.857 23 N -0.570 5.570 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.113 0.887 32 H 0.299 0.701 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.027 -16.974 -1.336 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 O -0.233 6.233 4 C 0.137 3.863 5 C -0.249 4.249 6 C 0.063 3.937 7 C -0.204 4.204 8 C -0.063 4.063 9 C -0.244 4.244 10 C 0.082 3.918 11 C -0.495 4.495 12 H 0.085 0.915 13 C -0.166 4.166 14 N -0.455 5.455 15 Si 0.786 3.214 16 H -0.183 1.183 17 H -0.200 1.200 18 H -0.178 1.178 19 C -0.275 4.275 20 C -0.070 4.070 21 C -0.245 4.245 22 C -0.011 4.011 23 N -0.296 5.296 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.173 0.827 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.616 -17.308 -1.332 19.380 hybrid contribution 0.180 1.389 -0.251 1.423 sum -8.436 -15.919 -1.583 18.086 Atomic orbital electron populations 1.21841 0.91162 1.04266 1.03166 1.22763 0.96117 0.80165 1.02186 1.86211 1.16927 1.32133 1.88006 1.19680 0.84198 0.89898 0.92524 1.21110 0.95398 0.95879 1.12502 1.19066 0.91683 0.93289 0.89705 1.18271 0.93377 0.90547 1.18213 1.20835 0.93544 0.97047 0.94904 1.20958 0.98965 0.92270 1.12234 1.18021 0.92210 0.93506 0.88086 1.19633 1.05577 0.92036 1.32233 0.91521 1.26880 0.98589 0.93828 0.97308 1.69676 1.38881 1.00831 1.36095 0.85518 0.78288 0.79428 0.78204 1.18294 1.19964 1.17784 1.20821 0.94847 0.96772 1.15061 1.20772 0.98992 0.91981 0.95294 1.22276 1.02153 0.92064 1.08044 1.22778 0.88697 0.98030 0.91550 1.67291 1.07452 1.32681 1.22167 0.91797 0.91816 0.87959 0.91923 0.91908 0.84865 0.84381 0.86932 0.89054 0.88234 0.86255 0.82689 0.79031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.06 1.37 6.03 71.98 0.43 1.80 16 3 O -0.32 -9.55 10.11 -90.04 -0.91 -10.46 16 4 C 0.31 10.01 7.48 84.73 0.63 10.64 16 5 C -0.23 -7.68 9.43 22.74 0.21 -7.47 16 6 C 0.07 2.36 5.91 -19.85 -0.12 2.24 16 7 C -0.20 -7.85 5.90 -19.87 -0.12 -7.97 16 8 C -0.05 -1.71 9.38 22.22 0.21 -1.50 16 9 C -0.23 -9.80 9.73 22.47 0.22 -9.58 16 10 C 0.08 4.17 5.10 -21.28 -0.11 4.06 16 11 C -0.47 -25.01 9.55 23.40 0.22 -24.78 16 12 H 0.07 3.80 8.06 -2.91 -0.02 3.77 16 13 C 0.05 2.65 5.40 85.29 0.46 3.11 16 14 N -0.83 -43.48 13.92 21.85 0.30 -43.17 16 15 Si 0.96 41.44 24.52 68.60 1.68 43.12 16 16 H -0.26 -10.57 6.71 99.48 0.67 -9.90 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.25 -11.32 6.87 99.48 0.68 -10.63 16 19 C -0.26 -11.87 7.11 22.47 0.16 -11.71 16 20 C -0.05 -2.16 9.38 22.21 0.21 -1.95 16 21 C -0.23 -6.20 9.50 22.63 0.21 -5.98 16 22 C 0.14 3.55 11.16 84.56 0.94 4.49 16 23 N -0.57 -16.58 9.19 -309.24 -2.84 -19.43 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 28 H 0.06 1.35 8.10 -2.38 -0.02 1.33 16 29 H 0.13 4.40 6.31 -2.91 -0.02 4.38 16 30 H 0.14 4.11 6.26 -2.91 -0.02 4.09 16 31 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 32 H 0.30 13.96 8.29 -92.71 -0.77 13.19 16 33 H 0.10 4.61 4.77 -2.91 -0.01 4.59 16 34 H 0.12 4.38 6.26 -2.91 -0.02 4.36 16 35 H 0.16 3.52 6.31 -2.91 -0.02 3.50 16 36 H 0.19 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -59.27 302.81 3.59 -55.69 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 1.03 Total: 20.38 kcal Atomic # 6 Polarization: -50.45 SS G_CDS: 4.32 Total: -46.13 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -2.54 Total: -62.60 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.91 Total: -10.46 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.68 Total: 43.12 kcal Total: -59.27 3.59 -55.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245267622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.036 kcal (2) G-P(sol) polarization free energy of solvation -59.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds