Wall clock time and date at job start Mon Mar 30 2020 00:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47229 * 2 1 4 4 C 1.35687 * 116.99904 * 180.02562 * 3 2 1 5 5 C 1.38656 * 119.61508 * 180.02562 * 4 3 2 6 6 C 1.39787 * 118.93499 * 180.02562 * 5 4 3 7 7 C 1.47921 * 120.89735 * 180.02562 * 6 5 4 8 8 C 1.39118 * 120.33305 * 309.96825 * 7 6 5 9 9 C 1.38146 * 119.98770 * 180.02562 * 8 7 6 10 10 C 1.38883 * 120.66562 * 359.97438 * 9 8 7 11 11 C 1.36467 * 120.68310 * 0.02562 * 10 9 8 12 12 C 1.40742 * 119.98226 * 359.97438 * 11 10 9 13 13 C 1.40902 * 120.32883 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99752 * 153.03751 * 13 12 11 15 15 C 1.40112 * 120.00204 * 333.04388 * 13 12 11 16 16 N 1.30747 * 119.99748 * 344.48801 * 15 13 12 17 17 Si 1.86798 * 120.00577 * 164.48875 * 15 13 12 18 18 H 1.48501 * 109.46889 * 59.99478 * 17 15 13 19 19 H 1.48499 * 109.47176 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47067 * 299.99970 * 17 15 13 21 21 C 1.40180 * 118.20131 * 0.26692 * 6 5 4 22 22 C 1.37766 * 119.11646 * 359.48177 * 21 6 5 23 23 N 1.32043 * 120.98448 * 0.53575 * 22 21 6 24 24 H 1.09012 * 109.46582 * 299.99753 * 1 2 3 25 25 H 1.08998 * 109.47270 * 59.99638 * 1 2 3 26 26 H 1.08993 * 109.47511 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46531 * 239.99899 * 2 1 3 28 28 H 1.08998 * 109.47270 * 120.00361 * 2 1 3 29 29 H 1.07999 * 120.53412 * 0.02562 * 5 4 3 30 30 H 1.08003 * 120.00380 * 0.05179 * 8 7 6 31 31 H 1.07995 * 119.66412 * 180.02562 * 9 8 7 32 32 H 1.08000 * 119.66187 * 180.28260 * 10 9 8 33 33 H 1.07999 * 120.01032 * 180.02562 * 11 10 9 34 34 H 0.97000 * 120.00155 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.44241 * 179.71011 * 21 6 5 36 36 H 1.07998 * 119.51000 * 180.23421 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5250 -0.0005 5 6 3.8729 2.8098 0.0000 6 6 5.2608 2.9765 -0.0011 7 6 5.8637 4.3273 -0.0001 8 6 5.4448 5.2843 -0.9188 9 6 6.0131 6.5434 -0.9118 10 6 7.0029 6.8687 0.0065 11 6 7.4344 5.9511 0.9198 12 6 6.8747 4.6598 0.9376 13 6 7.3143 3.7068 1.8778 14 1 6.6500 2.9176 2.1977 15 6 8.6131 3.7829 2.3977 16 7 9.5105 4.5291 1.8082 17 14 9.0629 2.8185 3.9329 18 1 8.8606 1.3686 3.6836 19 1 10.4863 3.0678 4.2748 20 1 8.1992 3.2520 5.0605 21 6 6.0658 1.8289 -0.0085 22 6 5.4655 0.5889 -0.0034 23 7 4.1504 0.4703 -0.0024 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2173 3.6680 0.0012 30 1 4.6752 5.0430 -1.6371 31 1 5.6836 7.2825 -1.6270 32 1 7.4328 7.8595 0.0005 33 1 8.2045 6.2158 1.6291 34 1 10.4096 4.5821 2.1683 35 1 7.1423 1.9156 -0.0143 36 1 6.0796 -0.2995 -0.0052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245267790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:25 Heat of formation + Delta-G solvation = -10.180427 kcal Electronic energy + Delta-G solvation = -19529.724335 eV Core-core repulsion = 16556.743546 eV Total energy + Delta-G solvation = -2972.980789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.46415 -39.66655 -38.55364 -35.61427 -34.18563 -32.95408 -31.60693 -30.62086 -30.38683 -27.29667 -25.15115 -24.17297 -23.46241 -22.64328 -21.57936 -19.36398 -18.88137 -17.64589 -17.20994 -17.08314 -16.74211 -16.26723 -15.71020 -15.39644 -15.06392 -14.73174 -14.64760 -14.37468 -13.79482 -13.54412 -13.37729 -13.23095 -13.06368 -12.83270 -12.69211 -12.59730 -12.38130 -12.16466 -11.68405 -11.55453 -11.45167 -11.08441 -10.62643 -10.50243 -9.42409 -9.29977 -9.18307 -8.66285 -6.34756 0.15013 0.37020 1.00314 1.19953 1.38481 1.47820 1.53532 2.12511 2.18523 2.72625 2.93940 3.45421 3.70015 4.03156 4.12206 4.20083 4.27984 4.29173 4.42473 4.49973 4.51809 4.58937 4.80854 4.86523 4.90545 4.97847 5.09431 5.13331 5.23741 5.27173 5.39797 5.57923 5.62115 5.66844 6.00478 6.08804 6.16748 6.32680 6.37389 6.64423 6.88774 6.95576 6.98538 8.28117 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.005995 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.836931 B = 4669.682420 C = 5871.203044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 O -0.321 6.321 4 C 0.309 3.691 5 C -0.211 4.211 6 C 0.079 3.921 7 C -0.209 4.209 8 C -0.072 4.072 9 C -0.242 4.242 10 C -0.101 4.101 11 C -0.184 4.184 12 C 0.108 3.892 13 C -0.472 4.472 14 H 0.074 0.926 15 C 0.044 3.956 16 N -0.814 5.814 17 Si 0.970 3.030 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.195 4.195 22 C 0.131 3.869 23 N -0.561 5.561 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.291 0.709 35 H 0.129 0.871 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 -6.727 -1.524 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 O -0.230 6.230 4 C 0.131 3.869 5 C -0.232 4.232 6 C 0.071 3.929 7 C -0.211 4.211 8 C -0.090 4.090 9 C -0.261 4.261 10 C -0.120 4.120 11 C -0.203 4.203 12 C 0.105 3.895 13 C -0.500 4.500 14 H 0.092 0.908 15 C -0.173 4.173 16 N -0.439 5.439 17 Si 0.791 3.209 18 H -0.182 1.182 19 H -0.190 1.190 20 H -0.190 1.190 21 C -0.216 4.216 22 C -0.022 4.022 23 N -0.286 5.286 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.153 0.847 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.320 -7.310 -1.524 11.179 hybrid contribution 1.024 0.575 0.629 1.332 sum -7.296 -6.735 -0.895 9.969 Atomic orbital electron populations 1.21829 0.90856 1.04277 1.03252 1.22774 0.96301 0.80259 1.02076 1.86204 1.16545 1.32032 1.88205 1.19655 0.84222 0.89821 0.93222 1.21192 0.94876 0.95804 1.11328 1.18992 0.91288 0.93633 0.88959 1.18767 1.06830 0.92879 1.02595 1.20892 0.98033 0.93073 0.97022 1.20667 1.03431 0.97399 1.04562 1.20806 0.96876 0.98565 0.95713 1.21068 1.03635 0.93647 1.01962 1.17807 0.89107 0.92437 0.90119 1.19634 0.98143 1.11235 1.21038 0.90806 1.26634 0.95582 0.95575 0.99476 1.69804 1.04426 1.32796 1.36855 0.85421 0.78059 0.79500 0.77941 1.18168 1.18986 1.19016 1.22211 1.01527 0.92666 1.05185 1.22614 0.88889 0.97565 0.93181 1.67268 1.06916 1.32739 1.21667 0.91792 0.91574 0.87956 0.91938 0.92253 0.84749 0.86941 0.86163 0.86961 0.87738 0.89840 0.85314 0.79767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.06 1.54 6.03 71.98 0.43 1.97 16 3 O -0.32 -10.68 10.11 -90.06 -0.91 -11.59 16 4 C 0.31 11.56 7.48 84.72 0.63 12.19 16 5 C -0.21 -8.46 9.59 22.74 0.22 -8.24 16 6 C 0.08 3.42 4.93 -19.87 -0.10 3.33 16 7 C -0.21 -9.96 5.56 -19.61 -0.11 -10.07 16 8 C -0.07 -3.13 9.55 22.46 0.21 -2.92 16 9 C -0.24 -10.18 10.03 22.40 0.22 -9.95 16 10 C -0.10 -4.54 9.96 22.01 0.22 -4.32 16 11 C -0.18 -9.33 8.62 22.47 0.19 -9.13 16 12 C 0.11 5.59 5.56 -21.12 -0.12 5.47 16 13 C -0.47 -24.06 7.19 23.38 0.17 -23.89 16 14 H 0.07 3.76 6.67 -2.91 -0.02 3.74 16 15 C 0.04 2.11 5.17 85.31 0.44 2.55 16 16 N -0.81 -40.25 10.98 21.86 0.24 -40.01 16 17 Si 0.97 36.82 29.59 68.60 2.03 38.85 16 18 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 19 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 21 C -0.20 -7.91 8.13 22.63 0.18 -7.73 16 22 C 0.13 4.53 11.16 84.55 0.94 5.48 16 23 N -0.56 -20.12 9.19 -309.24 -2.84 -22.96 16 24 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 28 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 29 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 30 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 32 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.10 5.50 6.26 -2.91 -0.02 5.48 16 34 H 0.29 13.04 8.29 -92.71 -0.77 12.27 16 35 H 0.13 5.49 7.41 -2.91 -0.02 5.47 16 36 H 0.19 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -57.25 309.99 3.89 -53.36 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 1.08 Total: 29.44 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 4.29 Total: -47.09 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -2.60 Total: -62.97 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.91 Total: -11.59 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -57.25 3.89 -53.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245267790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.180 kcal (2) G-P(sol) polarization free energy of solvation -57.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds