Wall clock time and date at job start Mon Mar 30 2020 00:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36012 * 116.99508 * 2 1 4 4 C 1.38263 * 120.02178 * 359.97438 * 3 2 1 5 5 C 1.39401 * 119.89966 * 180.02562 * 4 3 2 6 6 C 1.48359 * 120.03400 * 180.02562 * 5 4 3 7 7 C 1.39760 * 119.99842 * 359.72165 * 6 5 4 8 8 C 1.38388 * 120.37290 * 179.76062 * 7 6 5 9 9 C 1.37720 * 120.38127 * 0.52399 * 8 7 6 10 10 C 1.40759 * 119.99739 * 359.73700 * 9 8 7 11 11 C 1.41421 * 120.19023 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00380 * 154.79449 * 11 10 9 13 13 C 1.39926 * 119.99523 * 334.79139 * 11 10 9 14 14 N 1.30827 * 120.00731 * 342.73948 * 13 11 10 15 15 Si 1.86810 * 119.99641 * 162.74296 * 13 11 10 16 16 H 1.48501 * 109.46940 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46839 * 120.00222 * 15 13 11 18 18 H 1.48496 * 109.46778 * 239.99889 * 15 13 11 19 19 C 1.38753 * 120.00342 * 180.02562 * 6 5 4 20 20 C 1.39375 * 119.93585 * 359.73307 * 5 4 3 21 21 C 1.37959 * 120.04068 * 0.54494 * 20 5 4 22 22 C 1.38840 * 120.10215 * 359.45379 * 21 20 5 23 23 N 1.39840 * 119.96982 * 180.29792 * 22 21 20 24 24 H 1.08996 * 109.47711 * 59.99945 * 1 2 3 25 25 H 1.09003 * 109.46928 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46837 * 299.99389 * 1 2 3 27 27 H 1.08001 * 120.05183 * 0.05164 * 4 3 2 28 28 H 1.08002 * 119.81139 * 0.03023 * 7 6 5 29 29 H 1.08003 * 119.80893 * 180.25807 * 8 7 6 30 30 H 1.08004 * 120.00486 * 179.71872 * 9 8 7 31 31 H 0.96996 * 120.00493 * 179.97438 * 14 13 11 32 32 H 1.07998 * 120.18863 * 359.97438 * 19 6 5 33 33 H 1.08004 * 119.97675 * 180.27025 * 20 5 4 34 34 H 1.08001 * 119.95174 * 179.72532 * 21 20 5 35 35 H 0.96999 * 120.00009 * 359.97438 * 23 22 21 36 36 H 0.96999 * 119.99850 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2937 2.3717 -0.0005 5 6 1.9291 3.6125 -0.0011 6 6 1.1244 4.8589 -0.0011 7 6 -0.2715 4.7894 -0.0064 8 6 -1.0297 5.9470 -0.0015 9 6 -0.4175 7.1807 -0.0021 10 6 0.9873 7.2691 -0.0022 11 6 1.6203 8.5338 -0.0023 12 1 2.6187 8.6380 0.3959 13 6 0.9528 9.6500 -0.5184 14 7 -0.0883 9.4890 -1.2942 15 14 1.5484 11.3705 -0.0998 16 1 2.7346 11.2810 0.7890 17 1 1.9176 12.0840 -1.3487 18 1 0.4659 12.1139 0.5934 19 6 1.7575 6.0935 -0.0021 20 6 3.3212 3.6810 0.0046 21 6 4.0698 2.5222 -0.0007 22 6 3.4387 1.2855 -0.0002 23 7 4.2002 0.1127 0.0008 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.2151 2.3165 -0.0001 28 1 -0.7611 3.8267 -0.0100 29 1 -2.1078 5.8827 -0.0014 30 1 -1.0152 8.0802 -0.0028 31 1 -0.5511 10.2628 -1.6517 32 1 2.8360 6.1508 -0.0026 33 1 3.8142 4.6420 0.0086 34 1 5.1484 2.5770 -0.0008 35 1 5.1688 0.1633 0.0007 36 1 3.7597 -0.7515 0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245500035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:47 Heat of formation + Delta-G solvation = -15.986156 kcal Electronic energy + Delta-G solvation = -19236.224196 eV Core-core repulsion = 16262.991651 eV Total energy + Delta-G solvation = -2973.232545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16264 -39.44600 -38.12749 -36.01716 -34.99234 -31.99263 -31.70416 -30.93901 -28.88301 -27.54439 -27.13125 -23.76481 -23.60715 -21.93801 -21.65833 -19.43440 -18.36140 -17.84578 -17.64157 -17.17002 -16.58280 -16.45773 -15.98474 -15.51294 -15.16884 -14.81228 -14.64771 -14.26702 -14.10223 -13.93039 -13.47403 -13.08763 -12.97958 -12.77642 -12.72999 -12.33940 -12.15161 -11.98648 -11.96080 -11.57480 -11.43864 -11.15103 -10.98412 -9.57110 -9.38870 -9.22286 -8.61914 -7.85974 -6.33498 0.18883 0.53962 1.00722 1.38278 1.41035 1.54238 1.59553 2.22634 2.40708 2.70458 3.06761 3.07373 3.82019 3.91192 3.99606 4.30271 4.38166 4.42571 4.44848 4.57064 4.63310 4.72493 4.78034 4.95679 5.01873 5.11599 5.21308 5.30011 5.31175 5.45750 5.71376 5.77985 5.86297 6.05149 6.10555 6.23513 6.28455 6.42817 6.70740 6.74982 6.96452 7.04529 7.10593 8.36587 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031697 B = 0.004216 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.156999 B = 6639.060470 C = 7435.801830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.328 6.328 3 C 0.039 3.961 4 C -0.159 4.159 5 C -0.072 4.072 6 C -0.027 4.027 7 C -0.229 4.229 8 C -0.109 4.109 9 C -0.190 4.190 10 C 0.079 3.921 11 C -0.502 4.502 12 H 0.075 0.925 13 C 0.036 3.964 14 N -0.829 5.829 15 Si 0.982 3.018 16 H -0.258 1.258 17 H -0.266 1.266 18 H -0.264 1.264 19 C -0.227 4.227 20 C -0.109 4.109 21 C -0.165 4.165 22 C 0.186 3.814 23 N -0.862 5.862 24 H 0.052 0.948 25 H 0.125 0.875 26 H 0.054 0.946 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.287 0.713 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.153 0.847 35 H 0.408 0.592 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 -14.788 1.955 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.243 6.243 3 C -0.009 4.009 4 C -0.178 4.178 5 C -0.074 4.074 6 C -0.027 4.027 7 C -0.248 4.248 8 C -0.127 4.127 9 C -0.209 4.209 10 C 0.077 3.923 11 C -0.532 4.532 12 H 0.093 0.907 13 C -0.179 4.179 14 N -0.455 5.455 15 Si 0.802 3.198 16 H -0.182 1.182 17 H -0.191 1.191 18 H -0.189 1.189 19 C -0.246 4.246 20 C -0.127 4.127 21 C -0.188 4.188 22 C 0.081 3.919 23 N -0.405 5.405 24 H 0.071 0.929 25 H 0.143 0.857 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.171 0.829 35 H 0.239 0.761 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.911 -14.843 1.807 15.456 hybrid contribution -0.165 0.997 -0.045 1.011 sum 3.746 -13.847 1.762 14.452 Atomic orbital electron populations 1.23223 0.77189 1.05264 1.01508 1.85891 1.22617 1.25690 1.90098 1.18392 0.90892 0.84793 1.06811 1.21167 1.00286 0.90896 1.05422 1.18639 0.93341 0.91757 1.03704 1.18639 0.93177 0.91677 0.99188 1.20745 0.92728 0.97222 1.14147 1.20908 0.98736 0.92833 1.00198 1.21348 0.95078 0.96497 1.07991 1.17913 0.92539 0.93171 0.88640 1.19828 1.02474 0.93215 1.37692 0.90707 1.26735 0.94057 1.05300 0.91764 1.69886 1.18292 1.34263 1.23091 0.85171 0.79407 0.76012 0.79165 1.18175 1.19052 1.18892 1.21254 0.98114 0.91851 1.13406 1.21096 0.92791 0.98781 1.00063 1.20556 1.00578 0.89319 1.08378 1.17236 0.87422 0.88716 0.98480 1.42154 1.08534 1.04616 1.85168 0.92886 0.85659 0.92779 0.84700 0.86532 0.86885 0.88097 0.90231 0.88014 0.86021 0.82894 0.76145 0.76518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.55 16 2 O -0.33 -8.28 9.73 -93.68 -0.91 -9.19 16 3 C 0.04 1.17 6.70 22.56 0.15 1.33 16 4 C -0.16 -5.38 8.41 22.56 0.19 -5.20 16 5 C -0.07 -2.84 5.88 -20.03 -0.12 -2.96 16 6 C -0.03 -1.24 5.87 -20.09 -0.12 -1.36 16 7 C -0.23 -10.34 9.44 22.67 0.21 -10.12 16 8 C -0.11 -5.20 10.01 22.18 0.22 -4.97 16 9 C -0.19 -10.34 8.69 22.76 0.20 -10.14 16 10 C 0.08 4.46 5.56 -21.32 -0.12 4.34 16 11 C -0.50 -27.93 9.05 23.46 0.21 -27.72 16 12 H 0.07 4.02 7.90 -2.91 -0.02 3.99 16 13 C 0.04 1.84 5.14 85.25 0.44 2.28 16 14 N -0.83 -44.48 10.97 21.82 0.24 -44.24 16 15 Si 0.98 39.03 29.59 68.60 2.03 41.06 16 16 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 17 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 C -0.23 -11.65 9.17 22.96 0.21 -11.44 16 20 C -0.11 -3.82 9.41 22.48 0.21 -3.61 16 21 C -0.17 -4.65 9.87 22.35 0.22 -4.43 16 22 C 0.19 5.05 6.77 38.29 0.26 5.31 16 23 N -0.86 -16.34 9.08 -51.00 -0.46 -16.80 16 24 H 0.05 1.03 7.66 -2.39 -0.02 1.01 16 25 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 1.04 7.66 -2.39 -0.02 1.02 16 27 H 0.14 4.26 4.41 -2.91 -0.01 4.24 16 28 H 0.12 4.46 6.17 -2.91 -0.02 4.45 16 29 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.10 5.72 6.18 -2.91 -0.02 5.70 16 31 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 32 H 0.10 4.93 6.18 -2.91 -0.02 4.92 16 33 H 0.12 4.32 6.18 -2.91 -0.02 4.30 16 34 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 35 H 0.41 5.56 8.84 -92.71 -0.82 4.74 16 36 H 0.41 6.94 8.18 -92.71 -0.76 6.18 16 Total: -1.00 -65.04 302.39 3.74 -61.29 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -0.44 Total: 35.02 kcal Atomic # 6 Polarization: -70.42 SS G_CDS: 3.29 Total: -67.14 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.22 Total: -61.04 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.91 Total: -9.19 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -65.04 3.74 -61.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245500035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.306 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds