Wall clock time and date at job start Mon Mar 30 2020 00:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36003 * 117.00112 * 2 1 4 4 C 1.38083 * 120.00795 * 0.02562 * 3 2 1 5 5 C 1.39785 * 119.87348 * 179.97438 * 4 3 2 6 6 C 1.47707 * 120.05558 * 180.02562 * 5 4 3 7 7 C 1.39280 * 120.34198 * 309.97651 * 6 5 4 8 8 C 1.37989 * 119.97327 * 179.97438 * 7 6 5 9 9 C 1.38986 * 120.69215 * 0.02562 * 8 7 6 10 10 C 1.36393 * 120.70597 * 359.97438 * 9 8 7 11 11 C 1.40780 * 119.98784 * 359.74412 * 10 9 8 12 12 C 1.40826 * 120.33348 * 180.26021 * 11 10 9 13 13 H 1.07998 * 119.99908 * 153.80965 * 12 11 10 14 14 C 1.40018 * 119.99960 * 333.79996 * 12 11 10 15 15 N 1.30813 * 120.00041 * 342.68692 * 14 12 11 16 16 Si 1.86797 * 120.00068 * 162.68804 * 14 12 11 17 17 H 1.48502 * 109.46871 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47326 * 119.99728 * 16 14 12 19 19 H 1.48499 * 109.47114 * 239.99943 * 16 14 12 20 20 C 1.39791 * 119.88640 * 0.02562 * 5 4 3 21 21 C 1.37775 * 120.01752 * 359.97438 * 20 5 4 22 22 C 1.39022 * 120.12640 * 0.28140 * 21 20 5 23 23 N 1.39546 * 119.94454 * 179.74347 * 22 21 20 24 24 H 1.09008 * 109.46652 * 299.99390 * 1 2 3 25 25 H 1.08994 * 109.47070 * 59.99480 * 1 2 3 26 26 H 1.08994 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.06312 * 359.95466 * 4 3 2 28 28 H 1.07997 * 120.01980 * 0.02562 * 7 6 5 29 29 H 1.08001 * 119.65700 * 180.02562 * 8 7 6 30 30 H 1.07998 * 119.65176 * 179.97438 * 9 8 7 31 31 H 1.07989 * 120.00756 * 179.97438 * 10 9 8 32 32 H 0.97003 * 120.00104 * 179.97438 * 15 14 12 33 33 H 1.08000 * 119.98603 * 179.97438 * 20 5 4 34 34 H 1.08001 * 119.93843 * 179.97438 * 21 20 5 35 35 H 0.97002 * 119.99998 * 359.97438 * 23 22 21 36 36 H 0.97001 * 120.00289 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2946 2.3700 0.0005 5 6 1.9322 3.6139 0.0011 6 6 1.1318 4.8554 0.0022 7 6 0.1011 5.0289 -0.9184 8 6 -0.6421 6.1915 -0.9101 9 6 -0.3741 7.1983 0.0098 10 6 0.6286 7.0579 0.9236 11 6 1.4013 5.8813 0.9452 12 6 2.4348 5.7263 1.8892 13 1 2.7372 4.7376 2.2013 14 6 3.0703 6.8540 2.4229 15 7 2.9606 8.0116 1.8236 16 14 4.0748 6.7055 3.9908 17 1 4.0424 5.2996 4.4681 18 1 5.4795 7.1028 3.7183 19 1 3.5017 7.5957 5.0321 20 6 3.3285 3.6810 0.0005 21 6 4.0742 2.5225 0.0000 22 6 3.4407 1.2850 -0.0059 23 7 4.1998 0.1140 -0.0118 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2160 2.3148 0.0002 28 1 -0.1169 4.2536 -1.6378 29 1 -1.4404 6.3205 -1.6260 30 1 -0.9661 8.1016 0.0009 31 1 0.8273 7.8475 1.6330 32 1 3.4006 8.7929 2.1936 33 1 3.8227 4.6413 0.0005 34 1 5.1528 2.5759 -0.0008 35 1 5.1685 0.1640 -0.0122 36 1 3.7587 -0.7499 -0.0156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245503411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:50 Heat of formation + Delta-G solvation = 0.118402 kcal Electronic energy + Delta-G solvation = -19850.665350 eV Core-core repulsion = 16878.131152 eV Total energy + Delta-G solvation = -2972.534199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.63509 -37.77603 -36.57050 -34.01479 -33.68911 -30.31082 -29.83468 -29.18800 -27.61036 -26.32103 -25.12533 -22.02800 -21.64709 -20.65943 -19.76010 -17.52029 -17.01369 -16.50866 -16.15997 -15.37169 -15.28862 -14.80087 -14.42501 -13.95207 -13.47632 -13.38788 -12.85865 -12.70131 -12.52145 -12.38699 -11.70777 -11.62992 -11.22191 -11.09924 -11.00253 -10.73587 -10.70566 -10.50166 -10.37113 -10.01579 -9.44228 -9.34925 -9.19787 -7.92910 -7.49162 -7.38350 -6.83644 -6.44264 -4.33170 2.04973 2.20536 2.78824 3.06997 3.10781 3.13805 3.23066 3.67169 3.92324 4.37097 4.57057 4.64596 5.29793 5.41949 5.48646 5.63832 5.70855 5.86416 6.03196 6.09588 6.22150 6.27111 6.38684 6.53491 6.68148 6.86227 7.01711 7.11200 7.20514 7.33576 7.44985 7.55605 7.61405 7.64863 7.93274 8.04983 8.10792 8.17802 8.21289 8.28155 8.61964 8.86545 8.96165 10.14080 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.007222 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.441344 B = 3875.968319 C = 5154.206140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.330 6.330 3 C 0.039 3.961 4 C -0.167 4.167 5 C 0.000 4.000 6 C -0.177 4.177 7 C -0.075 4.075 8 C -0.244 4.244 9 C -0.103 4.103 10 C -0.159 4.159 11 C 0.128 3.872 12 C -0.449 4.449 13 H 0.085 0.915 14 C 0.077 3.923 15 N -0.790 5.790 16 Si 0.902 3.098 17 H -0.258 1.258 18 H -0.274 1.274 19 H -0.272 1.272 20 C -0.081 4.081 21 C -0.171 4.171 22 C 0.168 3.832 23 N -0.883 5.883 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.281 0.719 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.391 0.609 36 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 -9.714 -1.489 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.245 6.245 3 C -0.008 4.008 4 C -0.186 4.186 5 C -0.002 4.002 6 C -0.179 4.179 7 C -0.093 4.093 8 C -0.264 4.264 9 C -0.122 4.122 10 C -0.178 4.178 11 C 0.126 3.874 12 C -0.478 4.478 13 H 0.103 0.897 14 C -0.141 4.141 15 N -0.415 5.415 16 Si 0.726 3.274 17 H -0.182 1.182 18 H -0.199 1.199 19 H -0.197 1.197 20 C -0.099 4.099 21 C -0.194 4.194 22 C 0.066 3.934 23 N -0.425 5.425 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.138 0.862 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.218 0.782 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.391 -9.592 -1.470 9.711 hybrid contribution 0.382 0.004 0.684 0.783 sum 0.772 -9.587 -0.786 9.650 Atomic orbital electron populations 1.22869 0.79277 1.02631 1.01320 1.85854 1.20590 1.27401 1.90678 1.18227 0.90198 0.84279 1.08107 1.21145 0.99083 0.91339 1.07057 1.18409 0.92454 0.91505 0.97784 1.18573 1.01674 0.96415 1.01213 1.20565 0.95201 0.96230 0.97333 1.20249 1.04745 0.96783 1.04593 1.20457 0.97998 0.97035 0.96706 1.21014 0.96185 0.99799 1.00847 1.17553 0.90663 0.89840 0.89372 1.19598 1.14838 0.93863 1.19491 0.89739 1.25932 0.96123 0.94677 0.97416 1.69832 1.35095 1.00826 1.35699 0.86346 0.79343 0.79941 0.81749 1.18201 1.19928 1.19729 1.21139 0.93326 0.97646 0.97820 1.20343 0.98954 0.90370 1.09719 1.17039 0.87220 0.87545 1.01572 1.42048 1.07588 1.05406 1.87426 0.92982 0.93135 0.89235 0.86226 0.89441 0.89604 0.89628 0.86606 0.90858 0.85169 0.86460 0.78179 0.77700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.33 -5.26 9.73 -19.75 -0.19 -5.45 16 3 C 0.04 0.71 6.70 -39.12 -0.26 0.45 16 4 C -0.17 -3.27 8.50 -39.06 -0.33 -3.60 16 5 C 0.00 0.01 4.92 -104.87 -0.52 -0.51 16 6 C -0.18 -4.27 5.52 -104.23 -0.58 -4.85 16 7 C -0.07 -1.70 9.51 -39.29 -0.37 -2.08 16 8 C -0.24 -5.49 10.03 -39.40 -0.40 -5.88 16 9 C -0.10 -2.42 9.96 -39.97 -0.40 -2.82 16 10 C -0.16 -4.08 8.62 -39.29 -0.34 -4.42 16 11 C 0.13 3.33 5.55 -106.55 -0.59 2.74 16 12 C -0.45 -11.48 7.13 -37.94 -0.27 -11.75 16 13 H 0.08 2.16 6.64 -52.49 -0.35 1.81 16 14 C 0.08 1.87 5.13 -17.32 -0.09 1.78 16 15 N -0.79 -19.83 11.04 55.55 0.61 -19.21 16 16 Si 0.90 18.47 29.59 -169.99 -5.03 13.44 16 17 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 C -0.08 -1.68 7.99 -39.17 -0.31 -2.00 16 21 C -0.17 -3.08 9.87 -39.46 -0.39 -3.47 16 22 C 0.17 2.91 6.77 -83.54 -0.57 2.34 16 23 N -0.88 -11.87 9.07 32.55 0.30 -11.57 16 24 H 0.05 0.66 7.66 -51.92 -0.40 0.26 16 25 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.12 2.20 6.27 -52.49 -0.33 1.87 16 28 H 0.09 1.79 8.04 -52.49 -0.42 1.37 16 29 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.12 3.04 6.26 -52.49 -0.33 2.71 16 32 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 33 H 0.13 2.88 7.33 -52.49 -0.38 2.50 16 34 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.39 4.30 8.84 -40.82 -0.36 3.94 16 36 H 0.40 4.91 8.17 -40.82 -0.33 4.57 16 LS Contribution 304.24 15.07 4.58 4.58 Total: -1.00 -27.93 304.24 -8.28 -36.21 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -4.13 Total: 14.64 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: -4.42 Total: -32.63 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.91 Total: -30.79 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.19 Total: -5.45 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.93 -8.28 -36.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245503411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.326 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds