Wall clock time and date at job start Mon Mar 30 2020 00:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36003 * 117.00112 * 2 1 4 4 C 1.38083 * 120.00795 * 0.02562 * 3 2 1 5 5 C 1.39785 * 119.87348 * 179.97438 * 4 3 2 6 6 C 1.47707 * 120.05558 * 180.02562 * 5 4 3 7 7 C 1.39280 * 120.34198 * 309.97651 * 6 5 4 8 8 C 1.37989 * 119.97327 * 179.97438 * 7 6 5 9 9 C 1.38986 * 120.69215 * 0.02562 * 8 7 6 10 10 C 1.36393 * 120.70597 * 359.97438 * 9 8 7 11 11 C 1.40780 * 119.98784 * 359.74412 * 10 9 8 12 12 C 1.40826 * 120.33348 * 180.26021 * 11 10 9 13 13 H 1.07998 * 119.99908 * 153.80965 * 12 11 10 14 14 C 1.40018 * 119.99960 * 333.79996 * 12 11 10 15 15 N 1.30813 * 120.00041 * 342.68692 * 14 12 11 16 16 Si 1.86797 * 120.00068 * 162.68804 * 14 12 11 17 17 H 1.48502 * 109.46871 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47326 * 119.99728 * 16 14 12 19 19 H 1.48499 * 109.47114 * 239.99943 * 16 14 12 20 20 C 1.39791 * 119.88640 * 0.02562 * 5 4 3 21 21 C 1.37775 * 120.01752 * 359.97438 * 20 5 4 22 22 C 1.39022 * 120.12640 * 0.28140 * 21 20 5 23 23 N 1.39546 * 119.94454 * 179.74347 * 22 21 20 24 24 H 1.09008 * 109.46652 * 299.99390 * 1 2 3 25 25 H 1.08994 * 109.47070 * 59.99480 * 1 2 3 26 26 H 1.08994 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.06312 * 359.95466 * 4 3 2 28 28 H 1.07997 * 120.01980 * 0.02562 * 7 6 5 29 29 H 1.08001 * 119.65700 * 180.02562 * 8 7 6 30 30 H 1.07998 * 119.65176 * 179.97438 * 9 8 7 31 31 H 1.07989 * 120.00756 * 179.97438 * 10 9 8 32 32 H 0.97003 * 120.00104 * 179.97438 * 15 14 12 33 33 H 1.08000 * 119.98603 * 179.97438 * 20 5 4 34 34 H 1.08001 * 119.93843 * 179.97438 * 21 20 5 35 35 H 0.97002 * 119.99998 * 359.97438 * 23 22 21 36 36 H 0.97001 * 120.00289 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2946 2.3700 0.0005 5 6 1.9322 3.6139 0.0011 6 6 1.1318 4.8554 0.0022 7 6 0.1011 5.0289 -0.9184 8 6 -0.6421 6.1915 -0.9101 9 6 -0.3741 7.1983 0.0098 10 6 0.6286 7.0579 0.9236 11 6 1.4013 5.8813 0.9452 12 6 2.4348 5.7263 1.8892 13 1 2.7372 4.7376 2.2013 14 6 3.0703 6.8540 2.4229 15 7 2.9606 8.0116 1.8236 16 14 4.0748 6.7055 3.9908 17 1 4.0424 5.2996 4.4681 18 1 5.4795 7.1028 3.7183 19 1 3.5017 7.5957 5.0321 20 6 3.3285 3.6810 0.0005 21 6 4.0742 2.5225 0.0000 22 6 3.4407 1.2850 -0.0059 23 7 4.1998 0.1140 -0.0118 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2160 2.3148 0.0002 28 1 -0.1169 4.2536 -1.6378 29 1 -1.4404 6.3205 -1.6260 30 1 -0.9661 8.1016 0.0009 31 1 0.8273 7.8475 1.6330 32 1 3.4006 8.7929 2.1936 33 1 3.8227 4.6413 0.0005 34 1 5.1528 2.5759 -0.0008 35 1 5.1685 0.1640 -0.0122 36 1 3.7587 -0.7499 -0.0156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245503411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:49 Heat of formation + Delta-G solvation = -15.263166 kcal Electronic energy + Delta-G solvation = -19851.332345 eV Core-core repulsion = 16878.131152 eV Total energy + Delta-G solvation = -2973.201194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02616 -39.45397 -37.97990 -35.54938 -35.39162 -31.95989 -31.53853 -30.74142 -28.91443 -27.73332 -26.90900 -23.55792 -23.20202 -22.39080 -21.39345 -19.22683 -18.55530 -17.80040 -17.52377 -17.07722 -16.51801 -16.36968 -15.82445 -15.57187 -15.24115 -14.79284 -14.43411 -14.29889 -14.13898 -13.74577 -13.40151 -13.13160 -12.90296 -12.76723 -12.57141 -12.26841 -12.17759 -11.95089 -11.90315 -11.61463 -11.17996 -11.04236 -11.01104 -9.43937 -9.28128 -9.16480 -8.63279 -7.87812 -6.22656 0.49390 0.69013 1.04216 1.33584 1.38340 1.51412 1.53350 2.21762 2.47711 2.77521 3.07329 3.17043 3.80030 4.06779 4.22299 4.44393 4.45454 4.48746 4.57849 4.62668 4.65536 4.76528 4.82061 4.91469 5.12728 5.18637 5.33320 5.36412 5.45833 5.57368 5.76037 5.92271 5.97394 6.14626 6.24241 6.24920 6.36889 6.45062 6.73802 6.85186 6.99327 7.09584 7.17624 8.35146 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.007222 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.441344 B = 3875.968319 C = 5154.206140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.331 6.331 3 C 0.037 3.963 4 C -0.168 4.168 5 C -0.034 4.034 6 C -0.181 4.181 7 C -0.085 4.085 8 C -0.242 4.242 9 C -0.111 4.111 10 C -0.186 4.186 11 C 0.096 3.904 12 C -0.470 4.470 13 H 0.074 0.926 14 C 0.040 3.960 15 N -0.822 5.822 16 Si 0.969 3.031 17 H -0.262 1.262 18 H -0.264 1.264 19 H -0.265 1.265 20 C -0.095 4.095 21 C -0.172 4.172 22 C 0.177 3.823 23 N -0.864 5.864 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.287 0.713 33 H 0.105 0.895 34 H 0.143 0.857 35 H 0.406 0.594 36 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -11.949 -1.706 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.245 6.245 3 C -0.011 4.011 4 C -0.187 4.187 5 C -0.036 4.036 6 C -0.183 4.183 7 C -0.103 4.103 8 C -0.261 4.261 9 C -0.129 4.129 10 C -0.206 4.206 11 C 0.094 3.906 12 C -0.499 4.499 13 H 0.093 0.907 14 C -0.176 4.176 15 N -0.448 5.448 16 Si 0.790 3.210 17 H -0.185 1.185 18 H -0.189 1.189 19 H -0.190 1.190 20 C -0.114 4.114 21 C -0.195 4.195 22 C 0.072 3.928 23 N -0.407 5.407 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.161 0.839 35 H 0.236 0.764 36 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.586 -11.861 -1.700 11.997 hybrid contribution 0.260 0.521 0.640 0.865 sum 0.846 -11.340 -1.059 11.421 Atomic orbital electron populations 1.23174 0.77379 1.05037 1.01324 1.85861 1.22479 1.25911 1.90297 1.18315 0.90723 0.84655 1.07373 1.21162 0.99605 0.91029 1.06908 1.18410 0.92814 0.91574 1.00774 1.18949 1.01889 0.96888 1.00532 1.20892 0.94917 0.97056 0.97444 1.20626 1.05007 0.96092 1.04370 1.20731 0.97587 0.98272 0.96318 1.21005 0.97741 0.99844 1.01962 1.17915 0.91421 0.90848 0.90449 1.19618 1.15727 0.93880 1.20719 0.90745 1.26649 0.96925 0.94060 0.99929 1.69878 1.36299 1.01564 1.37075 0.85348 0.78164 0.79581 0.77885 1.18534 1.18911 1.18992 1.20986 0.93309 0.97721 0.99340 1.20497 1.00105 0.89717 1.09193 1.17142 0.87454 0.88431 0.99730 1.42003 1.08341 1.04548 1.85829 0.93330 0.92780 0.85692 0.85498 0.87146 0.86536 0.87452 0.88275 0.90209 0.87684 0.83916 0.76432 0.76659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 113.37 1.11 1.68 16 2 O -0.33 -9.60 9.73 -93.58 -0.91 -10.51 16 3 C 0.04 1.29 6.70 22.57 0.15 1.44 16 4 C -0.17 -6.47 8.50 22.61 0.19 -6.27 16 5 C -0.03 -1.50 4.92 -20.03 -0.10 -1.59 16 6 C -0.18 -8.96 5.52 -19.61 -0.11 -9.06 16 7 C -0.08 -3.83 9.51 22.46 0.21 -3.62 16 8 C -0.24 -10.65 10.03 22.39 0.22 -10.43 16 9 C -0.11 -5.23 9.96 22.02 0.22 -5.01 16 10 C -0.19 -9.91 8.62 22.46 0.19 -9.72 16 11 C 0.10 5.21 5.55 -21.11 -0.12 5.09 16 12 C -0.47 -25.16 7.13 23.34 0.17 -25.00 16 13 H 0.07 4.00 6.64 -2.91 -0.02 3.98 16 14 C 0.04 1.99 5.13 85.28 0.44 2.43 16 15 N -0.82 -42.90 11.04 21.84 0.24 -42.66 16 16 Si 0.97 38.73 29.59 68.60 2.03 40.76 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 20 C -0.09 -4.04 7.99 22.54 0.18 -3.86 16 21 C -0.17 -6.02 9.87 22.35 0.22 -5.80 16 22 C 0.18 5.73 6.77 38.44 0.26 5.99 16 23 N -0.86 -20.39 9.07 -50.94 -0.46 -20.85 16 24 H 0.05 1.12 7.66 -2.38 -0.02 1.11 16 25 H 0.05 1.18 7.66 -2.39 -0.02 1.16 16 26 H 0.12 1.88 8.14 -2.39 -0.02 1.87 16 27 H 0.13 4.56 6.27 -2.91 -0.02 4.54 16 28 H 0.11 4.37 8.04 -2.91 -0.02 4.35 16 29 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 31 H 0.10 5.49 6.26 -2.92 -0.02 5.47 16 32 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 33 H 0.11 4.92 7.33 -2.91 -0.02 4.90 16 34 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 35 H 0.41 7.46 8.84 -92.71 -0.82 6.64 16 36 H 0.40 8.56 8.17 -92.71 -0.76 7.81 16 Total: -1.00 -61.84 304.24 3.69 -58.14 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.45 Total: 38.85 kcal Atomic # 6 Polarization: -66.99 SS G_CDS: 3.25 Total: -63.74 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.22 Total: -63.51 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.91 Total: -10.51 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -61.84 3.69 -58.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245503411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.880 kcal (2) G-P(sol) polarization free energy of solvation -61.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds