Wall clock time and date at job start Mon Mar 30 2020 01:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38888 * 119.24707 * 2 1 4 4 C 1.36881 * 119.78582 * 179.97438 * 3 2 1 5 5 C 1.41145 * 118.38703 * 359.75181 * 4 3 2 6 6 C 1.40901 * 120.71523 * 180.26507 * 5 4 3 7 7 H 1.08002 * 119.99766 * 149.45462 * 6 5 4 8 8 C 1.40113 * 120.00257 * 329.44617 * 6 5 4 9 9 N 1.30741 * 119.99978 * 348.38741 * 8 6 5 10 10 Si 1.86802 * 119.99891 * 168.38323 * 8 6 5 11 11 H 1.48499 * 109.47207 * 90.00391 * 10 8 6 12 12 H 1.48506 * 109.46955 * 210.00413 * 10 8 6 13 13 H 1.48501 * 109.47410 * 329.99967 * 10 8 6 14 14 C 1.41820 * 118.56511 * 0.48913 * 5 4 3 15 15 C 1.47907 * 119.98601 * 179.77334 * 14 5 4 16 16 C 1.40047 * 120.93425 * 308.24040 * 15 14 5 17 17 C 1.37942 * 118.98627 * 180.02562 * 16 15 14 18 18 N 1.31946 * 120.91037 * 359.74904 * 17 16 15 19 19 C 1.31902 * 122.07422 * 0.52049 * 18 17 16 20 20 C 1.37988 * 120.90888 * 359.48026 * 19 18 17 21 21 C 1.50707 * 120.51035 * 180.23309 * 20 19 18 22 22 N 1.46899 * 109.46806 * 259.99790 * 21 20 19 23 23 N 1.31725 * 119.25125 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46664 * 270.01857 * 1 2 3 25 25 H 1.08994 * 109.47158 * 30.01762 * 1 2 3 26 26 H 1.08997 * 109.46826 * 150.02105 * 1 2 3 27 27 H 1.07997 * 120.10722 * 359.96661 * 3 2 1 28 28 H 1.07994 * 120.80561 * 180.02562 * 4 3 2 29 29 H 0.97005 * 119.99456 * 179.97438 * 9 8 6 30 30 H 1.07992 * 120.50673 * 359.97438 * 16 15 14 31 31 H 1.08003 * 119.54562 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.55124 * 179.75278 * 19 18 17 33 33 H 1.09004 * 109.46505 * 19.99518 * 21 20 19 34 34 H 1.08996 * 109.47455 * 139.99602 * 21 20 19 35 35 H 1.00897 * 110.99700 * 56.04415 * 22 21 20 36 36 H 1.00901 * 110.99768 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2118 0.0000 4 6 3.5544 1.2247 0.0005 5 6 4.2370 -0.0107 0.0064 6 6 5.6454 -0.0546 0.0129 7 1 6.1578 -0.8755 0.4924 8 6 6.3810 0.9665 -0.6030 9 7 5.7777 1.8333 -1.3737 10 14 8.2238 1.0894 -0.3229 11 1 8.9356 0.2937 -1.3551 12 1 8.6449 2.5104 -0.4158 13 1 8.5559 0.5618 1.0249 14 6 3.4749 -1.2066 0.0009 15 6 4.1580 -2.5185 0.0018 16 6 5.1543 -2.8121 -0.9377 17 6 5.7647 -4.0485 -0.9005 18 7 5.4250 -4.9451 0.0059 19 6 4.4888 -4.7119 0.9054 20 6 3.8263 -3.5020 0.9415 21 6 2.7618 -3.2432 1.9765 22 7 1.4359 -3.4313 1.3726 23 7 2.1507 -1.1493 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6351 2.1410 -0.0005 28 1 4.0987 2.1574 0.0010 29 1 6.2870 2.5404 -1.7998 30 1 5.4397 -2.0819 -1.6804 31 1 6.5339 -4.2846 -1.6210 32 1 4.2403 -5.4768 1.6262 33 1 2.8851 -3.9391 2.8063 34 1 2.8523 -2.2208 2.3431 35 1 1.3503 -4.3515 0.9677 36 1 0.7044 -3.2638 2.0471 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245556751.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:16 Heat of formation + Delta-G solvation = 55.328863 kcal Electronic energy + Delta-G solvation = -20300.641942 eV Core-core repulsion = 17362.794600 eV Total energy + Delta-G solvation = -2937.847342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.67683 -38.21075 -34.66495 -34.31756 -32.58656 -30.85588 -30.21924 -29.77769 -27.77464 -25.04609 -24.37858 -23.04323 -21.46464 -20.55487 -20.20079 -17.40592 -16.31874 -15.91244 -15.62488 -15.46355 -14.44135 -14.16461 -14.02608 -13.82482 -13.47037 -13.18540 -12.87814 -12.74455 -12.47906 -11.83261 -11.76003 -11.73199 -11.46531 -11.40736 -11.14237 -10.94134 -10.78715 -10.58025 -9.95056 -9.44944 -8.96929 -8.82617 -8.40689 -8.11800 -8.03995 -7.83702 -7.40568 -6.90839 -4.55640 1.76135 1.85667 2.61815 2.95409 2.97049 3.02232 3.16029 3.78947 4.45059 4.52805 4.99510 5.19848 5.31822 5.37083 5.46818 5.55786 5.74568 6.00543 6.03074 6.10230 6.26004 6.28378 6.38718 6.44797 6.49453 6.57992 6.71388 6.80602 6.96767 7.01288 7.19511 7.22989 7.38466 7.64993 7.67676 7.80990 7.89547 7.95093 8.33703 8.56927 8.58960 8.63798 9.66420 9.98033 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.009580 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.606159 B = 2921.912107 C = 4574.198743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.008 4.008 3 C -0.143 4.143 4 C -0.128 4.128 5 C 0.087 3.913 6 C -0.444 4.444 7 H 0.082 0.918 8 C 0.076 3.924 9 N -0.790 5.790 10 Si 0.908 3.092 11 H -0.266 1.266 12 H -0.275 1.275 13 H -0.259 1.259 14 C 0.005 3.995 15 C 0.093 3.907 16 C -0.146 4.146 17 C 0.081 3.919 18 N -0.506 5.506 19 C 0.088 3.912 20 C -0.138 4.138 21 C 0.127 3.873 22 N -0.812 5.812 23 N -0.396 5.396 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.284 0.716 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.017 0.983 34 H 0.075 0.925 35 H 0.329 0.671 36 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 -4.119 3.112 5.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.151 4.151 3 C -0.163 4.163 4 C -0.154 4.154 5 C 0.083 3.917 6 C -0.473 4.473 7 H 0.100 0.900 8 C -0.143 4.143 9 N -0.414 5.414 10 Si 0.732 3.268 11 H -0.191 1.191 12 H -0.199 1.199 13 H -0.183 1.183 14 C -0.133 4.133 15 C 0.084 3.916 16 C -0.167 4.167 17 C -0.075 4.075 18 N -0.215 5.215 19 C -0.069 4.069 20 C -0.141 4.141 21 C -0.004 4.004 22 N -0.340 5.340 23 N -0.103 5.103 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.114 0.886 28 H 0.141 0.859 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.355 -4.870 2.475 5.949 hybrid contribution 0.926 1.235 0.689 1.691 sum -1.429 -3.635 3.164 5.026 Atomic orbital electron populations 1.20221 0.91581 1.00654 1.00180 1.20343 0.95000 0.88446 1.11275 1.21332 0.95417 0.97343 1.02218 1.21327 0.92595 0.98628 1.02804 1.18329 0.94011 0.90808 0.88577 1.19499 0.90998 1.06402 1.30420 0.89981 1.25954 1.01458 0.94009 0.92915 1.69731 1.38752 1.12362 1.20572 0.86283 0.81650 0.78489 0.80362 1.19086 1.19947 1.18322 1.19325 0.88949 0.90385 1.14674 1.18625 0.90922 0.91409 0.90627 1.22347 0.97014 0.97496 0.99855 1.22462 0.98676 0.89990 0.96336 1.67480 1.14995 1.34467 1.04580 1.22290 0.93047 0.94929 0.96664 1.20889 0.99418 0.95022 0.98820 1.20307 0.87682 1.00574 0.91822 1.58483 1.02200 1.34706 1.38583 1.67109 1.08396 1.27986 1.06819 0.93428 0.93453 0.92386 0.88557 0.85918 0.90463 0.84446 0.83675 0.84290 0.96486 0.90642 0.85963 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.15 36.01 0.37 -0.84 16 2 C -0.01 -0.17 6.79 -82.40 -0.56 -0.73 16 3 C -0.14 -3.19 9.65 -39.83 -0.38 -3.58 16 4 C -0.13 -3.13 8.70 -38.97 -0.34 -3.47 16 5 C 0.09 2.19 5.53 -106.42 -0.59 1.61 16 6 C -0.44 -10.90 7.17 -37.87 -0.27 -11.17 16 7 H 0.08 2.01 6.93 -52.49 -0.36 1.65 16 8 C 0.08 1.77 5.25 -17.31 -0.09 1.68 16 9 N -0.79 -19.04 11.05 55.56 0.61 -18.43 16 10 Si 0.91 17.78 29.58 -169.99 -5.03 12.75 16 11 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 12 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 13 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 14 C 0.00 0.11 5.54 -82.23 -0.46 -0.34 16 15 C 0.09 2.03 5.03 -104.60 -0.53 1.50 16 16 C -0.15 -3.01 8.28 -39.01 -0.32 -3.33 16 17 C 0.08 1.48 11.17 -17.61 -0.20 1.28 16 18 N -0.51 -9.40 10.34 -13.35 -0.14 -9.53 16 19 C 0.09 1.55 10.82 -17.61 -0.19 1.36 16 20 C -0.14 -2.63 5.44 -104.05 -0.57 -3.20 16 21 C 0.13 2.15 6.07 -4.97 -0.03 2.12 16 22 N -0.81 -12.72 8.25 -11.41 -0.09 -12.82 16 23 N -0.40 -9.11 8.06 -5.44 -0.04 -9.15 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.12 3.07 6.50 -52.49 -0.34 2.73 16 29 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 30 H 0.14 2.91 7.52 -52.49 -0.39 2.52 16 31 H 0.15 2.21 8.06 -52.48 -0.42 1.79 16 32 H 0.14 2.00 8.04 -52.49 -0.42 1.58 16 33 H 0.02 0.25 8.02 -51.93 -0.42 -0.17 16 34 H 0.08 1.47 7.50 -51.93 -0.39 1.08 16 35 H 0.33 4.70 8.98 -39.29 -0.35 4.35 16 36 H 0.33 4.46 9.08 -39.29 -0.36 4.10 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -27.19 305.52 -8.52 -35.72 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -4.28 Total: 13.97 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -4.16 Total: -17.11 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.34 Total: -49.93 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.19 -8.52 -35.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245556751.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.047 kcal (2) G-P(sol) polarization free energy of solvation -27.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds