Wall clock time and date at job start Mon Mar 30 2020 01:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38888 * 119.24707 * 2 1 4 4 C 1.36881 * 119.78582 * 179.97438 * 3 2 1 5 5 C 1.41145 * 118.38703 * 359.75181 * 4 3 2 6 6 C 1.40901 * 120.71523 * 180.26507 * 5 4 3 7 7 H 1.08002 * 119.99766 * 149.45462 * 6 5 4 8 8 C 1.40113 * 120.00257 * 329.44617 * 6 5 4 9 9 N 1.30741 * 119.99978 * 348.38741 * 8 6 5 10 10 Si 1.86802 * 119.99891 * 168.38323 * 8 6 5 11 11 H 1.48499 * 109.47207 * 90.00391 * 10 8 6 12 12 H 1.48506 * 109.46955 * 210.00413 * 10 8 6 13 13 H 1.48501 * 109.47410 * 329.99967 * 10 8 6 14 14 C 1.41820 * 118.56511 * 0.48913 * 5 4 3 15 15 C 1.47907 * 119.98601 * 179.77334 * 14 5 4 16 16 C 1.40047 * 120.93425 * 308.24040 * 15 14 5 17 17 C 1.37942 * 118.98627 * 180.02562 * 16 15 14 18 18 N 1.31946 * 120.91037 * 359.74904 * 17 16 15 19 19 C 1.31902 * 122.07422 * 0.52049 * 18 17 16 20 20 C 1.37988 * 120.90888 * 359.48026 * 19 18 17 21 21 C 1.50707 * 120.51035 * 180.23309 * 20 19 18 22 22 N 1.46899 * 109.46806 * 259.99790 * 21 20 19 23 23 N 1.31725 * 119.25125 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46664 * 270.01857 * 1 2 3 25 25 H 1.08994 * 109.47158 * 30.01762 * 1 2 3 26 26 H 1.08997 * 109.46826 * 150.02105 * 1 2 3 27 27 H 1.07997 * 120.10722 * 359.96661 * 3 2 1 28 28 H 1.07994 * 120.80561 * 180.02562 * 4 3 2 29 29 H 0.97005 * 119.99456 * 179.97438 * 9 8 6 30 30 H 1.07992 * 120.50673 * 359.97438 * 16 15 14 31 31 H 1.08003 * 119.54562 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.55124 * 179.75278 * 19 18 17 33 33 H 1.09004 * 109.46505 * 19.99518 * 21 20 19 34 34 H 1.08996 * 109.47455 * 139.99602 * 21 20 19 35 35 H 1.00897 * 110.99700 * 56.04415 * 22 21 20 36 36 H 1.00901 * 110.99768 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2118 0.0000 4 6 3.5544 1.2247 0.0005 5 6 4.2370 -0.0107 0.0064 6 6 5.6454 -0.0546 0.0129 7 1 6.1578 -0.8755 0.4924 8 6 6.3810 0.9665 -0.6030 9 7 5.7777 1.8333 -1.3737 10 14 8.2238 1.0894 -0.3229 11 1 8.9356 0.2937 -1.3551 12 1 8.6449 2.5104 -0.4158 13 1 8.5559 0.5618 1.0249 14 6 3.4749 -1.2066 0.0009 15 6 4.1580 -2.5185 0.0018 16 6 5.1543 -2.8121 -0.9377 17 6 5.7647 -4.0485 -0.9005 18 7 5.4250 -4.9451 0.0059 19 6 4.4888 -4.7119 0.9054 20 6 3.8263 -3.5020 0.9415 21 6 2.7618 -3.2432 1.9765 22 7 1.4359 -3.4313 1.3726 23 7 2.1507 -1.1493 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6351 2.1410 -0.0005 28 1 4.0987 2.1574 0.0010 29 1 6.2870 2.5404 -1.7998 30 1 5.4397 -2.0819 -1.6804 31 1 6.5339 -4.2846 -1.6210 32 1 4.2403 -5.4768 1.6262 33 1 2.8851 -3.9391 2.8063 34 1 2.8523 -2.2208 2.3431 35 1 1.3503 -4.3515 0.9677 36 1 0.7044 -3.2638 2.0471 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245556751.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:16 Heat of formation + Delta-G solvation = 38.598784 kcal Electronic energy + Delta-G solvation = -20301.367413 eV Core-core repulsion = 17362.794600 eV Total energy + Delta-G solvation = -2938.572813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21960 -39.89848 -36.15441 -35.95246 -34.18066 -32.61651 -31.69218 -31.32311 -29.45937 -26.61028 -25.87331 -24.69148 -23.05890 -22.21858 -21.79037 -19.21454 -17.85040 -17.48668 -17.17194 -16.91079 -16.13426 -15.77122 -15.51368 -15.22303 -15.05897 -14.73701 -14.30357 -14.19775 -14.08604 -13.49047 -13.44680 -13.14592 -13.09708 -12.94132 -12.72738 -12.57343 -12.29560 -12.15814 -11.70889 -11.18380 -10.57977 -10.33613 -9.90567 -9.84259 -9.71430 -9.17775 -9.15499 -8.65974 -6.39369 0.19389 0.34658 0.91776 1.22033 1.35702 1.46192 1.50337 2.15491 2.74300 2.98550 3.62785 3.65131 3.76872 3.98025 4.04420 4.11799 4.32682 4.43903 4.52904 4.60990 4.67639 4.80050 4.85471 4.93557 5.03242 5.07818 5.09670 5.17187 5.25614 5.38593 5.47072 5.66753 5.84126 5.89702 6.02622 6.11066 6.47258 6.52351 6.76087 6.82971 6.86239 7.12518 7.87564 8.25351 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.009580 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.606159 B = 2921.912107 C = 4574.198743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.016 4.016 3 C -0.148 4.148 4 C -0.150 4.150 5 C 0.057 3.943 6 C -0.464 4.464 7 H 0.073 0.927 8 C 0.041 3.959 9 N -0.821 5.821 10 Si 0.973 3.027 11 H -0.259 1.259 12 H -0.265 1.265 13 H -0.263 1.263 14 C -0.002 4.002 15 C 0.063 3.937 16 C -0.162 4.162 17 C 0.087 3.913 18 N -0.509 5.509 19 C 0.096 3.904 20 C -0.142 4.142 21 C 0.135 3.865 22 N -0.822 5.822 23 N -0.401 5.401 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.291 0.709 30 H 0.119 0.881 31 H 0.175 0.825 32 H 0.178 0.822 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.339 0.661 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 -5.519 3.741 7.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.158 4.158 3 C -0.168 4.168 4 C -0.176 4.176 5 C 0.053 3.947 6 C -0.493 4.493 7 H 0.091 0.909 8 C -0.175 4.175 9 N -0.446 5.446 10 Si 0.794 3.206 11 H -0.184 1.184 12 H -0.189 1.189 13 H -0.187 1.187 14 C -0.140 4.140 15 C 0.054 3.946 16 C -0.183 4.183 17 C -0.068 4.068 18 N -0.218 5.218 19 C -0.062 4.062 20 C -0.145 4.145 21 C 0.004 3.996 22 N -0.353 5.353 23 N -0.109 5.109 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.127 0.873 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.192 0.808 32 H 0.195 0.805 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.151 0.849 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.722 -6.274 3.105 7.511 hybrid contribution 0.905 1.605 0.506 1.911 sum -1.816 -4.670 3.611 6.176 Atomic orbital electron populations 1.20246 0.88228 1.01741 1.01676 1.21140 0.97290 0.88017 1.09403 1.21626 0.94813 0.98870 1.01522 1.21346 0.93711 0.98107 1.04477 1.18657 0.94785 0.91627 0.89647 1.19506 0.91157 1.07061 1.31626 0.90927 1.26656 1.05372 0.93307 0.92173 1.69776 1.40416 1.13057 1.21357 0.85325 0.76542 0.78830 0.79952 1.18380 1.18946 1.18669 1.19714 0.89433 0.91200 1.13641 1.18794 0.91966 0.91492 0.92383 1.22285 0.97744 0.98296 0.99937 1.22838 0.98570 0.88862 0.96578 1.67608 1.15230 1.34240 1.04737 1.22838 0.91749 0.95008 0.96559 1.21144 0.99967 0.94866 0.98539 1.20171 0.87798 0.99536 0.92096 1.58361 1.02017 1.35583 1.39325 1.67244 1.08028 1.28404 1.07194 0.91603 0.91398 0.92246 0.86040 0.87285 0.89849 0.86299 0.80765 0.80503 0.93180 0.93833 0.84877 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.03 10.15 71.24 0.72 -1.31 16 2 C -0.02 -0.69 6.79 42.73 0.29 -0.40 16 3 C -0.15 -6.67 9.65 22.11 0.21 -6.46 16 4 C -0.15 -7.65 8.70 22.67 0.20 -7.45 16 5 C 0.06 3.00 5.53 -21.03 -0.12 2.88 16 6 C -0.46 -23.77 7.17 23.38 0.17 -23.60 16 7 H 0.07 3.73 6.93 -2.91 -0.02 3.71 16 8 C 0.04 1.97 5.25 85.31 0.45 2.41 16 9 N -0.82 -40.90 11.05 21.86 0.24 -40.66 16 10 Si 0.97 37.04 29.58 68.60 2.03 39.07 16 11 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 12 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 13 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 14 C 0.00 -0.09 5.54 42.49 0.24 0.14 16 15 C 0.06 2.77 5.03 -19.85 -0.10 2.67 16 16 C -0.16 -6.75 8.28 22.64 0.19 -6.56 16 17 C 0.09 3.08 11.17 84.61 0.95 4.02 16 18 N -0.51 -17.74 10.34 -196.14 -2.03 -19.77 16 19 C 0.10 3.11 10.82 84.62 0.92 4.03 16 20 C -0.14 -5.24 5.44 -19.49 -0.11 -5.35 16 21 C 0.14 4.37 6.07 85.56 0.52 4.89 16 22 N -0.82 -24.27 8.25 -190.00 -1.57 -25.84 16 23 N -0.40 -18.52 8.06 -171.11 -1.38 -19.90 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 28 H 0.11 5.73 6.50 -2.91 -0.02 5.71 16 29 H 0.29 13.14 8.29 -92.70 -0.77 12.37 16 30 H 0.12 5.30 7.52 -2.91 -0.02 5.28 16 31 H 0.18 4.99 8.06 -2.91 -0.02 4.97 16 32 H 0.18 4.33 8.04 -2.91 -0.02 4.31 16 33 H 0.05 1.29 8.02 -2.39 -0.02 1.27 16 34 H 0.04 1.69 7.50 -2.39 -0.02 1.67 16 35 H 0.34 8.89 8.98 -89.70 -0.81 8.08 16 36 H 0.34 8.54 9.08 -89.69 -0.81 7.73 16 Total: -1.00 -59.96 305.52 1.32 -58.64 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: -0.49 Total: 38.55 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 4.52 Total: -30.08 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -4.73 Total: -106.17 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -59.96 1.32 -58.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245556751.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.236 kcal (2) G-P(sol) polarization free energy of solvation -59.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds