Wall clock time and date at job start Mon Mar 30 2020 01:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31256 * 119.80306 * 2 1 4 4 C 1.32987 * 121.73597 * 180.02562 * 3 2 1 5 5 C 1.48043 * 119.44889 * 180.02562 * 4 3 2 6 6 C 1.39983 * 120.92872 * 179.97438 * 5 4 3 7 7 C 1.37953 * 118.99168 * 179.97438 * 6 5 4 8 8 N 1.31937 * 120.90628 * 0.02562 * 7 6 5 9 9 C 1.31900 * 122.05682 * 0.02562 * 8 7 6 10 10 C 1.37992 * 120.90530 * 359.73628 * 9 8 7 11 11 C 1.50703 * 120.50254 * 180.28413 * 10 9 8 12 12 N 1.46902 * 109.47406 * 260.22844 * 11 10 9 13 13 C 1.39843 * 121.11102 * 0.02562 * 4 3 2 14 14 C 1.36665 * 119.46472 * 359.97438 * 13 4 3 15 15 C 1.40967 * 119.79945 * 179.97438 * 2 1 3 16 16 C 1.41060 * 120.56073 * 0.27607 * 15 2 1 17 17 H 1.08002 * 119.99272 * 334.52610 * 16 15 2 18 18 C 1.40069 * 120.00415 * 154.52447 * 16 15 2 19 19 N 1.30762 * 120.00088 * 343.87251 * 18 16 15 20 20 Si 1.86799 * 120.00274 * 163.87318 * 18 16 15 21 21 H 1.48501 * 109.47155 * 89.99957 * 20 18 16 22 22 H 1.48502 * 109.47331 * 209.99731 * 20 18 16 23 23 H 1.48496 * 109.46962 * 330.00136 * 20 18 16 24 24 H 1.09002 * 109.46743 * 269.99974 * 1 2 3 25 25 H 1.08999 * 109.47172 * 29.99748 * 1 2 3 26 26 H 1.08999 * 109.47216 * 150.00264 * 1 2 3 27 27 H 1.07994 * 120.50694 * 359.96382 * 6 5 4 28 28 H 1.08001 * 119.54439 * 179.97438 * 7 6 5 29 29 H 1.08003 * 119.54663 * 180.02562 * 9 8 7 30 30 H 1.08998 * 109.47147 * 20.23390 * 11 10 9 31 31 H 1.09001 * 109.46654 * 140.23229 * 11 10 9 32 32 H 1.00903 * 111.00010 * 180.02562 * 12 11 10 33 33 H 1.00900 * 110.99838 * 303.96066 * 12 11 10 34 34 H 1.07999 * 120.26892 * 180.02562 * 13 4 3 35 35 H 1.07994 * 120.79522 * 179.97438 * 14 13 4 36 36 H 0.96996 * 119.99948 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1390 0.0000 4 6 3.4885 1.1838 -0.0005 5 6 4.1724 2.4968 0.0001 6 6 5.5697 2.5801 0.0001 7 6 6.1654 3.8244 0.0002 8 7 5.4369 4.9244 0.0007 9 6 4.1183 4.8909 0.0017 10 6 3.4399 3.6893 -0.0032 11 6 1.9331 3.6615 -0.0085 12 7 1.4431 3.4146 1.3542 13 6 4.2510 0.0116 -0.0016 14 6 3.6201 -1.2007 -0.0016 15 6 2.2075 -1.2233 0.0005 16 6 1.5099 -2.4493 -0.0048 17 1 0.5073 -2.5017 0.3933 18 6 2.1175 -3.5986 -0.5262 19 7 3.1784 -3.4913 -1.2831 20 14 1.4122 -5.2848 -0.1405 21 1 0.4081 -5.6492 -1.1721 22 1 2.5055 -6.2898 -0.1372 23 1 0.7623 -5.2559 1.1944 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 6.1724 1.6840 0.0003 28 1 7.2428 3.8991 0.0006 29 1 3.5620 5.8166 0.0016 30 1 1.5533 4.6197 -0.3632 31 1 1.5868 2.8664 -0.6688 32 1 0.4346 3.3910 1.3771 33 1 1.8331 2.5632 1.7300 34 1 5.3297 0.0639 -0.0016 35 1 4.1878 -2.1194 -0.0029 36 1 3.5989 -4.2871 -1.6444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245557724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:18 Heat of formation + Delta-G solvation = 56.670107 kcal Electronic energy + Delta-G solvation = -19948.902120 eV Core-core repulsion = 17011.112939 eV Total energy + Delta-G solvation = -2937.789182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.87198 -38.46283 -34.97393 -34.10176 -32.86281 -31.06361 -30.43982 -30.09169 -27.18605 -25.85017 -24.41809 -23.15394 -21.64713 -20.54441 -20.28690 -17.68762 -16.61630 -16.16871 -15.59459 -15.29528 -14.64549 -14.36292 -14.06788 -13.91195 -13.60820 -13.36795 -12.96675 -12.80288 -12.47237 -12.10013 -11.86346 -11.75232 -11.67057 -11.53479 -11.30424 -11.07043 -10.82205 -10.69306 -10.01514 -9.75938 -9.22015 -9.04088 -8.61394 -8.47583 -8.33546 -7.74291 -7.51220 -7.16135 -4.74351 1.44041 1.67210 2.55491 2.74552 2.84231 2.88042 3.05100 3.60091 4.16969 4.50760 4.91129 5.07453 5.30335 5.34645 5.40823 5.59319 5.67352 5.78109 5.91512 6.10047 6.18912 6.26924 6.33698 6.39738 6.44406 6.54963 6.62509 6.65543 6.73436 6.90846 7.04159 7.10446 7.21657 7.48576 7.60267 7.69798 7.74366 8.07657 8.13246 8.31965 8.42293 8.49312 9.30972 9.69791 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029511 B = 0.005319 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.564860 B = 5263.060407 C = 6073.442642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.006 3.994 3 N -0.439 5.439 4 C -0.014 4.014 5 C 0.060 3.940 6 C -0.189 4.189 7 C 0.091 3.909 8 N -0.512 5.512 9 C 0.106 3.894 10 C -0.128 4.128 11 C 0.109 3.891 12 N -0.836 5.836 13 C -0.116 4.116 14 C -0.142 4.142 15 C 0.077 3.923 16 C -0.423 4.423 17 H 0.091 0.909 18 C 0.071 3.929 19 N -0.770 5.770 20 Si 0.916 3.084 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.256 1.256 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.129 0.871 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.330 0.670 33 H 0.345 0.655 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 2.649 1.116 2.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.140 4.140 3 N -0.148 5.148 4 C -0.147 4.147 5 C 0.051 3.949 6 C -0.210 4.210 7 C -0.065 4.065 8 N -0.221 5.221 9 C -0.051 4.051 10 C -0.132 4.132 11 C -0.022 4.022 12 N -0.365 5.365 13 C -0.137 4.137 14 C -0.167 4.167 15 C 0.072 3.928 16 C -0.452 4.452 17 H 0.109 0.891 18 C -0.151 4.151 19 N -0.393 5.393 20 Si 0.739 3.261 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.180 1.180 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.147 0.853 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.145 0.855 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.096 4.785 1.143 4.921 hybrid contribution -0.325 -3.420 -0.406 3.460 sum -0.422 1.365 0.738 1.608 Atomic orbital electron populations 1.20271 0.90873 1.01355 1.00482 1.21034 0.95126 0.88108 1.09758 1.66773 1.08447 1.29509 1.10115 1.18580 0.89127 0.90250 1.16730 1.18920 0.92077 0.92091 0.91767 1.22099 0.94571 0.99078 1.05223 1.22407 0.99526 0.87857 0.96734 1.67534 1.07576 1.32192 1.14838 1.22412 0.89888 0.96911 0.95887 1.20866 0.97230 0.92811 1.02248 1.20637 0.89390 1.00139 0.92055 1.59124 1.11817 1.44253 1.21302 1.21269 0.98703 0.93330 1.00403 1.21326 0.94675 0.96655 1.04045 1.18426 0.92547 0.93199 0.88668 1.19773 1.01567 0.92023 1.31808 0.89110 1.26148 0.94172 1.02316 0.92463 1.69753 1.16504 1.32930 1.20109 0.86157 0.79697 0.79678 0.80572 1.18970 1.19690 1.17967 0.93167 0.93246 0.91369 0.85312 0.83681 0.83735 0.92871 0.90458 0.85983 0.84092 0.87999 0.85489 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 9.58 36.00 0.34 -0.99 16 2 C 0.01 0.14 6.86 -81.81 -0.56 -0.42 16 3 N -0.44 -9.45 4.73 -5.39 -0.03 -9.47 16 4 C -0.01 -0.31 6.56 -82.75 -0.54 -0.85 16 5 C 0.06 1.20 5.91 -104.58 -0.62 0.58 16 6 C -0.19 -3.32 9.49 -39.03 -0.37 -3.69 16 7 C 0.09 1.49 11.17 -17.61 -0.20 1.29 16 8 N -0.51 -9.07 10.34 -13.35 -0.14 -9.21 16 9 C 0.11 1.84 10.82 -17.61 -0.19 1.65 16 10 C -0.13 -2.39 5.45 -104.07 -0.57 -2.96 16 11 C 0.11 1.90 6.02 -4.97 -0.03 1.87 16 12 N -0.84 -14.19 9.43 -11.41 -0.11 -14.30 16 13 C -0.12 -2.55 9.40 -39.55 -0.37 -2.92 16 14 C -0.14 -3.35 8.73 -39.00 -0.34 -3.69 16 15 C 0.08 1.82 5.58 -106.64 -0.60 1.22 16 16 C -0.42 -9.67 8.14 -37.83 -0.31 -9.98 16 17 H 0.09 1.94 6.86 -52.49 -0.36 1.58 16 18 C 0.07 1.54 5.19 -17.32 -0.09 1.45 16 19 N -0.77 -17.55 10.93 55.55 0.61 -16.94 16 20 Si 0.92 16.23 29.59 -169.99 -5.03 11.20 16 21 H -0.26 -4.66 7.11 56.52 0.40 -4.25 16 22 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 23 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.24 6.76 -51.93 -0.35 0.89 16 27 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 28 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.15 2.17 8.04 -52.48 -0.42 1.74 16 30 H 0.05 0.82 8.02 -51.93 -0.42 0.41 16 31 H 0.08 1.50 5.79 -51.93 -0.30 1.20 16 32 H 0.33 4.93 9.08 -39.29 -0.36 4.57 16 33 H 0.35 6.57 7.32 -39.29 -0.29 6.28 16 34 H 0.10 1.98 6.24 -52.49 -0.33 1.65 16 35 H 0.13 3.04 6.25 -52.49 -0.33 2.71 16 36 H 0.29 5.95 8.29 -40.82 -0.34 5.61 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -25.18 298.52 -8.51 -33.70 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -3.88 Total: 17.96 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -4.44 Total: -17.43 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.34 Total: -49.92 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -5.03 Total: 11.20 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -25.18 -8.51 -33.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245557724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.367 kcal (2) G-P(sol) polarization free energy of solvation -25.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds