Wall clock time and date at job start Mon Mar 30 2020 01:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31256 * 119.80306 * 2 1 4 4 C 1.32987 * 121.73597 * 180.02562 * 3 2 1 5 5 C 1.48043 * 119.44889 * 180.02562 * 4 3 2 6 6 C 1.39983 * 120.92872 * 179.97438 * 5 4 3 7 7 C 1.37953 * 118.99168 * 179.97438 * 6 5 4 8 8 N 1.31937 * 120.90628 * 0.02562 * 7 6 5 9 9 C 1.31900 * 122.05682 * 0.02562 * 8 7 6 10 10 C 1.37992 * 120.90530 * 359.73628 * 9 8 7 11 11 C 1.50703 * 120.50254 * 180.28413 * 10 9 8 12 12 N 1.46902 * 109.47406 * 260.22844 * 11 10 9 13 13 C 1.39843 * 121.11102 * 0.02562 * 4 3 2 14 14 C 1.36665 * 119.46472 * 359.97438 * 13 4 3 15 15 C 1.40967 * 119.79945 * 179.97438 * 2 1 3 16 16 C 1.41060 * 120.56073 * 0.27607 * 15 2 1 17 17 H 1.08002 * 119.99272 * 334.52610 * 16 15 2 18 18 C 1.40069 * 120.00415 * 154.52447 * 16 15 2 19 19 N 1.30762 * 120.00088 * 343.87251 * 18 16 15 20 20 Si 1.86799 * 120.00274 * 163.87318 * 18 16 15 21 21 H 1.48501 * 109.47155 * 89.99957 * 20 18 16 22 22 H 1.48502 * 109.47331 * 209.99731 * 20 18 16 23 23 H 1.48496 * 109.46962 * 330.00136 * 20 18 16 24 24 H 1.09002 * 109.46743 * 269.99974 * 1 2 3 25 25 H 1.08999 * 109.47172 * 29.99748 * 1 2 3 26 26 H 1.08999 * 109.47216 * 150.00264 * 1 2 3 27 27 H 1.07994 * 120.50694 * 359.96382 * 6 5 4 28 28 H 1.08001 * 119.54439 * 179.97438 * 7 6 5 29 29 H 1.08003 * 119.54663 * 180.02562 * 9 8 7 30 30 H 1.08998 * 109.47147 * 20.23390 * 11 10 9 31 31 H 1.09001 * 109.46654 * 140.23229 * 11 10 9 32 32 H 1.00903 * 111.00010 * 180.02562 * 12 11 10 33 33 H 1.00900 * 110.99838 * 303.96066 * 12 11 10 34 34 H 1.07999 * 120.26892 * 180.02562 * 13 4 3 35 35 H 1.07994 * 120.79522 * 179.97438 * 14 13 4 36 36 H 0.96996 * 119.99948 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1390 0.0000 4 6 3.4885 1.1838 -0.0005 5 6 4.1724 2.4968 0.0001 6 6 5.5697 2.5801 0.0001 7 6 6.1654 3.8244 0.0002 8 7 5.4369 4.9244 0.0007 9 6 4.1183 4.8909 0.0017 10 6 3.4399 3.6893 -0.0032 11 6 1.9331 3.6615 -0.0085 12 7 1.4431 3.4146 1.3542 13 6 4.2510 0.0116 -0.0016 14 6 3.6201 -1.2007 -0.0016 15 6 2.2075 -1.2233 0.0005 16 6 1.5099 -2.4493 -0.0048 17 1 0.5073 -2.5017 0.3933 18 6 2.1175 -3.5986 -0.5262 19 7 3.1784 -3.4913 -1.2831 20 14 1.4122 -5.2848 -0.1405 21 1 0.4081 -5.6492 -1.1721 22 1 2.5055 -6.2898 -0.1372 23 1 0.7623 -5.2559 1.1944 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 6.1724 1.6840 0.0003 28 1 7.2428 3.8991 0.0006 29 1 3.5620 5.8166 0.0016 30 1 1.5533 4.6197 -0.3632 31 1 1.5868 2.8664 -0.6688 32 1 0.4346 3.3910 1.3771 33 1 1.8331 2.5632 1.7300 34 1 5.3297 0.0639 -0.0016 35 1 4.1878 -2.1194 -0.0029 36 1 3.5989 -4.2871 -1.6444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245557724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:18 Heat of formation + Delta-G solvation = 42.657662 kcal Electronic energy + Delta-G solvation = -19949.509745 eV Core-core repulsion = 17011.112939 eV Total energy + Delta-G solvation = -2938.396807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33610 -40.04165 -36.50301 -35.59754 -34.41283 -32.69737 -31.94981 -31.49644 -28.79520 -27.40891 -25.83338 -24.67898 -23.22067 -21.99830 -21.88658 -19.36595 -18.08452 -17.63057 -17.11928 -16.71308 -16.21022 -15.83951 -15.54843 -15.29169 -15.13824 -14.93505 -14.40231 -14.26251 -13.88894 -13.58023 -13.42149 -13.32688 -13.15289 -13.05055 -12.80302 -12.62767 -12.22865 -12.07687 -11.64858 -11.34378 -10.75288 -10.44531 -10.21412 -9.92447 -9.91414 -9.23310 -9.13627 -8.78607 -6.45975 -0.07792 0.31668 0.93707 1.12282 1.38491 1.50556 1.56926 2.12626 2.60616 3.03283 3.54393 3.65416 3.66950 3.93006 4.04824 4.20384 4.24495 4.29692 4.52116 4.53138 4.70845 4.82743 4.90922 4.91117 4.96212 5.00078 5.07865 5.14143 5.20249 5.35716 5.47421 5.57558 5.75158 5.86543 5.96868 5.98851 6.34594 6.42450 6.63493 6.70670 6.75226 7.13115 7.61488 8.10629 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029511 B = 0.005319 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.564860 B = 5263.060407 C = 6073.442642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.010 4.010 3 N -0.434 5.434 4 C -0.022 4.022 5 C 0.032 3.968 6 C -0.190 4.190 7 C 0.094 3.906 8 N -0.518 5.518 9 C 0.104 3.896 10 C -0.137 4.137 11 C 0.113 3.887 12 N -0.832 5.832 13 C -0.125 4.125 14 C -0.165 4.165 15 C 0.048 3.952 16 C -0.449 4.449 17 H 0.098 0.902 18 C 0.035 3.965 19 N -0.805 5.805 20 Si 0.986 3.014 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.253 1.253 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.142 0.858 28 H 0.182 0.818 29 H 0.170 0.830 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.341 0.659 33 H 0.333 0.667 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 3.516 1.399 3.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.156 4.156 3 N -0.143 5.143 4 C -0.155 4.155 5 C 0.024 3.976 6 C -0.211 4.211 7 C -0.062 4.062 8 N -0.227 5.227 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.018 4.018 12 N -0.360 5.360 13 C -0.145 4.145 14 C -0.190 4.190 15 C 0.043 3.957 16 C -0.477 4.477 17 H 0.116 0.884 18 C -0.184 4.184 19 N -0.428 5.428 20 Si 0.806 3.194 21 H -0.184 1.184 22 H -0.193 1.193 23 H -0.177 1.177 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.159 0.841 28 H 0.199 0.801 29 H 0.187 0.813 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.183 5.675 1.423 5.854 hybrid contribution -0.205 -3.497 -0.504 3.539 sum -0.389 2.178 0.920 2.396 Atomic orbital electron populations 1.20247 0.88591 1.01786 1.01550 1.21587 0.96865 0.87864 1.09329 1.66926 1.08387 1.29046 1.09959 1.19026 0.89494 0.91238 1.15745 1.19070 0.93258 0.91625 0.93693 1.22329 0.93873 1.00345 1.04547 1.22966 1.01190 0.86914 0.95083 1.67633 1.07777 1.32691 1.14643 1.22785 0.90052 0.97372 0.95040 1.21055 0.97826 0.92907 1.02251 1.20587 0.88990 1.00496 0.91746 1.59131 1.12685 1.43266 1.20915 1.21493 0.99815 0.93034 1.00153 1.21337 0.95077 0.96813 1.05737 1.18787 0.92942 0.94412 0.89560 1.20024 1.02203 0.92587 1.32879 0.88388 1.26963 0.94233 1.05537 0.91658 1.69803 1.17792 1.34196 1.21044 0.85115 0.78946 0.75020 0.80321 1.18386 1.19288 1.17685 0.91663 0.92073 0.91543 0.84076 0.80071 0.81309 0.90620 0.92591 0.84735 0.85492 0.86158 0.86737 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.35 9.58 71.23 0.68 -1.66 16 2 C -0.01 -0.46 6.86 43.31 0.30 -0.17 16 3 N -0.43 -18.78 4.73 -170.95 -0.81 -19.59 16 4 C -0.02 -0.96 6.56 41.96 0.28 -0.68 16 5 C 0.03 1.26 5.91 -19.84 -0.12 1.14 16 6 C -0.19 -6.38 9.49 22.63 0.21 -6.16 16 7 C 0.09 2.83 11.17 84.61 0.95 3.78 16 8 N -0.52 -16.92 10.34 -196.14 -2.03 -18.95 16 9 C 0.10 3.37 10.82 84.62 0.92 4.28 16 10 C -0.14 -4.91 5.45 -19.51 -0.11 -5.01 16 11 C 0.11 3.78 6.02 85.56 0.51 4.30 16 12 N -0.83 -27.14 9.43 -190.00 -1.79 -28.93 16 13 C -0.12 -5.56 9.40 22.29 0.21 -5.35 16 14 C -0.16 -8.04 8.73 22.65 0.20 -7.84 16 15 C 0.05 2.34 5.58 -21.17 -0.12 2.22 16 16 C -0.45 -20.93 8.14 23.41 0.19 -20.74 16 17 H 0.10 4.24 6.86 -2.91 -0.02 4.22 16 18 C 0.03 1.53 5.19 85.30 0.44 1.97 16 19 N -0.80 -37.63 10.93 21.85 0.24 -37.39 16 20 Si 0.99 33.20 29.59 68.60 2.03 35.23 16 21 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 22 H -0.27 -8.77 7.11 99.48 0.71 -8.06 16 23 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.07 2.42 6.76 -2.39 -0.02 2.40 16 27 H 0.14 4.28 6.29 -2.91 -0.02 4.26 16 28 H 0.18 4.03 8.06 -2.91 -0.02 4.00 16 29 H 0.17 4.52 8.04 -2.91 -0.02 4.50 16 30 H 0.08 2.17 8.02 -2.39 -0.02 2.15 16 31 H 0.06 2.14 5.79 -2.39 -0.01 2.13 16 32 H 0.34 9.68 9.08 -89.69 -0.81 8.87 16 33 H 0.33 12.47 7.32 -89.69 -0.66 11.81 16 34 H 0.12 4.71 6.24 -2.91 -0.02 4.70 16 35 H 0.11 5.75 6.25 -2.91 -0.02 5.73 16 36 H 0.30 12.42 8.29 -92.71 -0.77 11.65 16 Total: -1.00 -54.25 298.52 1.86 -52.40 By element: Atomic # 1 Polarization: 47.50 SS G_CDS: -0.33 Total: 47.17 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 4.54 Total: -29.93 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -4.39 Total: -104.86 kcal Atomic # 14 Polarization: 33.20 SS G_CDS: 2.03 Total: 35.23 kcal Total: -54.25 1.86 -52.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245557724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.056 kcal (2) G-P(sol) polarization free energy of solvation -54.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds