Wall clock time and date at job start Mon Mar 30 2020 01:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38269 * 120.40486 * 2 1 4 4 C 1.39470 * 118.43697 * 180.24271 * 3 2 1 5 5 N 1.39846 * 120.41558 * 179.80103 * 4 3 2 6 6 C 1.38607 * 120.00177 * 185.48276 * 5 4 3 7 7 C 1.38839 * 120.30580 * 254.61149 * 6 5 4 8 8 C 1.38090 * 120.02003 * 180.25525 * 7 6 5 9 9 C 1.38939 * 120.63937 * 359.73867 * 8 7 6 10 10 C 1.36418 * 120.60976 * 359.97438 * 9 8 7 11 11 C 1.40736 * 119.95563 * 0.02562 * 10 9 8 12 12 C 1.40998 * 120.31301 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00585 * 205.84514 * 12 11 10 14 14 C 1.39892 * 119.99917 * 25.84344 * 12 11 10 15 15 N 1.30904 * 119.99816 * 13.98215 * 14 12 11 16 16 Si 1.86796 * 120.00475 * 193.97512 * 14 12 11 17 17 H 1.48501 * 109.47552 * 265.02718 * 16 14 12 18 18 H 1.48506 * 109.46887 * 25.02718 * 16 14 12 19 19 H 1.48499 * 109.47606 * 145.02282 * 16 14 12 20 20 C 1.38781 * 119.17035 * 359.51847 * 4 3 2 21 21 N 1.31925 * 120.73803 * 0.26072 * 20 4 3 22 22 C 1.32381 * 121.70528 * 359.97438 * 21 20 4 23 23 N 1.39222 * 119.61671 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47184 * 270.21378 * 1 2 3 25 25 H 1.09006 * 109.47256 * 30.22219 * 1 2 3 26 26 H 1.09003 * 109.46713 * 150.21247 * 1 2 3 27 27 H 1.08002 * 120.78053 * 0.02562 * 3 2 1 28 28 H 0.97003 * 120.00233 * 5.48960 * 5 4 3 29 29 H 1.08002 * 119.98786 * 0.02562 * 7 6 5 30 30 H 1.08003 * 119.68229 * 179.76322 * 8 7 6 31 31 H 1.07999 * 119.69832 * 179.97438 * 9 8 7 32 32 H 1.08006 * 120.02149 * 180.02562 * 10 9 8 33 33 H 0.97001 * 119.99991 * 180.02562 * 15 14 12 34 34 H 1.07996 * 119.63183 * 180.27753 * 20 4 3 35 35 H 0.96993 * 120.00369 * 359.97438 * 23 22 21 36 36 H 0.97002 * 119.99781 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1925 0.0000 4 6 3.6007 1.1446 -0.0052 5 7 4.3497 2.3256 -0.0096 6 6 5.7294 2.2708 -0.1294 7 6 6.5384 2.5029 0.9749 8 6 7.9124 2.4520 0.8476 9 6 8.4999 2.1643 -0.3781 10 6 7.7297 1.9263 -1.4787 11 6 6.3267 1.9717 -1.3778 12 6 5.5235 1.7274 -2.5105 13 1 4.5305 2.1481 -2.5694 14 6 6.0127 0.9400 -3.5583 15 7 7.0854 0.2105 -3.3830 16 14 5.1353 0.9295 -5.2073 17 1 4.1913 -0.2156 -5.2585 18 1 4.3833 2.1989 -5.3759 19 1 6.1337 0.7971 -6.2986 20 6 4.2351 -0.0896 0.0000 21 7 3.5349 -1.2077 0.0046 22 6 2.2111 -1.1996 0.0049 23 7 1.5156 -2.4056 0.0104 24 1 -0.3633 0.0038 1.0276 25 1 -0.3634 0.8880 -0.5173 26 1 -0.3633 -0.8919 -0.5106 27 1 1.6863 2.1388 0.0004 28 1 3.9036 3.1832 0.0713 29 1 6.0928 2.7270 1.9328 30 1 8.5366 2.6373 1.7094 31 1 9.5761 2.1288 -0.4605 32 1 8.1964 1.7031 -2.4268 33 1 7.4249 -0.3351 -4.1096 34 1 5.3141 -0.1354 0.0006 35 1 2.0010 -3.2454 0.0136 36 1 0.5456 -2.4061 0.0103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249788467.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:12 Heat of formation + Delta-G solvation = 58.838578 kcal Electronic energy + Delta-G solvation = -20039.634424 eV Core-core repulsion = 17101.939275 eV Total energy + Delta-G solvation = -2937.695150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71995 -37.91972 -35.25075 -33.70742 -33.26644 -32.56853 -29.61826 -29.20828 -27.11482 -26.31148 -25.02943 -22.47640 -21.40041 -20.97314 -19.78365 -17.36807 -17.14268 -16.80267 -15.91933 -15.67942 -15.08056 -14.27403 -14.10755 -13.90339 -13.58226 -13.28367 -12.77120 -12.61060 -12.46834 -12.43555 -12.22551 -11.61612 -11.43304 -11.17844 -11.09957 -10.97127 -10.74991 -10.45669 -9.78907 -9.64970 -9.22634 -9.04250 -8.77134 -8.31228 -7.45367 -7.41017 -6.79092 -6.09922 -4.39085 1.94945 2.37780 2.73295 2.92923 3.05965 3.09864 3.21405 3.91828 4.11957 4.50862 4.63419 4.71012 5.27846 5.39276 5.56477 5.60844 5.75340 5.78836 5.88545 6.15313 6.19703 6.35928 6.40487 6.59132 6.71163 6.82073 7.03023 7.13528 7.22132 7.32497 7.44686 7.71425 7.86639 7.92019 8.00822 8.06605 8.22174 8.39484 8.55569 8.74038 8.83910 9.02598 9.08280 10.14199 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.007994 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.134988 B = 3501.805688 C = 4630.476478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.170 4.170 3 C -0.131 4.131 4 C 0.147 3.853 5 N -0.665 5.665 6 C -0.001 4.001 7 C -0.088 4.088 8 C -0.239 4.239 9 C -0.105 4.105 10 C -0.154 4.154 11 C 0.111 3.889 12 C -0.437 4.437 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.787 5.787 16 Si 0.905 3.095 17 H -0.270 1.270 18 H -0.261 1.261 19 H -0.275 1.275 20 C 0.104 3.896 21 N -0.506 5.506 22 C 0.331 3.669 23 N -0.869 5.869 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.388 0.612 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.281 0.719 34 H 0.157 0.843 35 H 0.395 0.605 36 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 -0.330 3.318 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.177 4.177 3 C -0.162 4.162 4 C 0.041 3.959 5 N -0.288 5.288 6 C -0.095 4.095 7 C -0.108 4.108 8 C -0.259 4.259 9 C -0.123 4.123 10 C -0.174 4.174 11 C 0.107 3.893 12 C -0.466 4.466 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.412 5.412 16 Si 0.729 3.271 17 H -0.196 1.196 18 H -0.185 1.185 19 H -0.200 1.200 20 C -0.058 4.058 21 N -0.221 5.221 22 C 0.095 3.905 23 N -0.417 5.417 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.139 0.861 28 H 0.222 0.778 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.174 0.826 35 H 0.223 0.777 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.874 -1.276 3.167 8.583 hybrid contribution -1.030 0.686 -0.849 1.500 sum -8.904 -0.590 2.318 9.220 Atomic orbital electron populations 1.20489 0.91600 1.01876 1.01270 1.19704 0.95811 0.92122 1.10070 1.20555 0.91933 0.97365 1.06341 1.18670 0.90398 0.88907 0.97938 1.40908 1.03885 1.03808 1.80243 1.17296 0.81469 1.17997 0.92712 1.20748 0.93588 1.00561 0.95883 1.20210 0.93789 1.14853 0.97044 1.20478 0.97637 1.00427 0.93787 1.21086 0.93543 1.04575 0.98199 1.17832 0.92128 0.88597 0.90750 1.19390 1.01353 1.26030 0.99824 0.90499 1.25907 0.94524 0.93479 1.00339 1.69825 1.19703 1.18575 1.33133 0.86338 0.79925 0.79764 0.81046 1.19555 1.18513 1.19999 1.22063 0.99698 0.85133 0.98927 1.67020 1.05839 1.31660 1.17605 1.17902 0.88327 0.85882 0.98344 1.41964 1.07823 1.04817 1.87104 0.92087 0.91916 0.92476 0.86056 0.77788 0.89291 0.89434 0.89471 0.86034 0.90830 0.82634 0.77730 0.77341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.58 36.01 0.35 -0.79 16 2 C -0.17 -2.82 5.91 -104.29 -0.62 -3.44 16 3 C -0.13 -2.31 9.72 -39.11 -0.38 -2.69 16 4 C 0.15 2.99 6.11 -83.54 -0.51 2.48 16 5 N -0.67 -13.42 4.73 -7.91 -0.04 -13.45 16 6 C 0.00 -0.02 4.63 -83.30 -0.39 -0.40 16 7 C -0.09 -1.91 9.96 -39.41 -0.39 -2.30 16 8 C -0.24 -5.18 10.03 -39.38 -0.40 -5.57 16 9 C -0.10 -2.38 9.96 -39.98 -0.40 -2.78 16 10 C -0.15 -3.85 8.62 -39.29 -0.34 -4.19 16 11 C 0.11 2.80 5.07 -106.63 -0.54 2.26 16 12 C -0.44 -11.16 8.03 -37.92 -0.30 -11.47 16 13 H 0.08 1.97 7.59 -52.48 -0.40 1.57 16 14 C 0.08 1.88 5.21 -17.33 -0.09 1.79 16 15 N -0.79 -20.00 10.82 55.55 0.60 -19.40 16 16 Si 0.90 19.10 29.58 -169.99 -5.03 14.07 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 C 0.10 2.35 10.14 -17.31 -0.18 2.18 16 21 N -0.51 -10.85 10.38 -12.22 -0.13 -10.98 16 22 C 0.33 6.04 7.73 -154.84 -1.20 4.84 16 23 N -0.87 -12.09 8.99 31.16 0.28 -11.81 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 27 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.39 6.83 8.85 -40.82 -0.36 6.46 16 29 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.12 3.15 6.11 -52.48 -0.32 2.83 16 33 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 34 H 0.16 3.90 6.74 -52.49 -0.35 3.55 16 35 H 0.39 5.18 8.95 -40.82 -0.37 4.82 16 36 H 0.40 4.29 6.80 -40.82 -0.28 4.01 16 LS Contribution 304.91 15.07 4.59 4.59 Total: -1.00 -28.00 304.91 -9.18 -37.18 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -4.09 Total: 19.87 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -5.38 Total: -20.08 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.72 Total: -55.64 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.00 -9.18 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249788467.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.021 kcal (2) G-P(sol) polarization free energy of solvation -27.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds