Wall clock time and date at job start Mon Mar 30 2020 01:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38269 * 120.40486 * 2 1 4 4 C 1.39470 * 118.43697 * 180.24271 * 3 2 1 5 5 N 1.39846 * 120.41558 * 179.80103 * 4 3 2 6 6 C 1.38607 * 120.00177 * 185.48276 * 5 4 3 7 7 C 1.38839 * 120.30580 * 254.61149 * 6 5 4 8 8 C 1.38090 * 120.02003 * 180.25525 * 7 6 5 9 9 C 1.38939 * 120.63937 * 359.73867 * 8 7 6 10 10 C 1.36418 * 120.60976 * 359.97438 * 9 8 7 11 11 C 1.40736 * 119.95563 * 0.02562 * 10 9 8 12 12 C 1.40998 * 120.31301 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00585 * 205.84514 * 12 11 10 14 14 C 1.39892 * 119.99917 * 25.84344 * 12 11 10 15 15 N 1.30904 * 119.99816 * 13.98215 * 14 12 11 16 16 Si 1.86796 * 120.00475 * 193.97512 * 14 12 11 17 17 H 1.48501 * 109.47552 * 265.02718 * 16 14 12 18 18 H 1.48506 * 109.46887 * 25.02718 * 16 14 12 19 19 H 1.48499 * 109.47606 * 145.02282 * 16 14 12 20 20 C 1.38781 * 119.17035 * 359.51847 * 4 3 2 21 21 N 1.31925 * 120.73803 * 0.26072 * 20 4 3 22 22 C 1.32381 * 121.70528 * 359.97438 * 21 20 4 23 23 N 1.39222 * 119.61671 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47184 * 270.21378 * 1 2 3 25 25 H 1.09006 * 109.47256 * 30.22219 * 1 2 3 26 26 H 1.09003 * 109.46713 * 150.21247 * 1 2 3 27 27 H 1.08002 * 120.78053 * 0.02562 * 3 2 1 28 28 H 0.97003 * 120.00233 * 5.48960 * 5 4 3 29 29 H 1.08002 * 119.98786 * 0.02562 * 7 6 5 30 30 H 1.08003 * 119.68229 * 179.76322 * 8 7 6 31 31 H 1.07999 * 119.69832 * 179.97438 * 9 8 7 32 32 H 1.08006 * 120.02149 * 180.02562 * 10 9 8 33 33 H 0.97001 * 119.99991 * 180.02562 * 15 14 12 34 34 H 1.07996 * 119.63183 * 180.27753 * 20 4 3 35 35 H 0.96993 * 120.00369 * 359.97438 * 23 22 21 36 36 H 0.97002 * 119.99781 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1925 0.0000 4 6 3.6007 1.1446 -0.0052 5 7 4.3497 2.3256 -0.0096 6 6 5.7294 2.2708 -0.1294 7 6 6.5384 2.5029 0.9749 8 6 7.9124 2.4520 0.8476 9 6 8.4999 2.1643 -0.3781 10 6 7.7297 1.9263 -1.4787 11 6 6.3267 1.9717 -1.3778 12 6 5.5235 1.7274 -2.5105 13 1 4.5305 2.1481 -2.5694 14 6 6.0127 0.9400 -3.5583 15 7 7.0854 0.2105 -3.3830 16 14 5.1353 0.9295 -5.2073 17 1 4.1913 -0.2156 -5.2585 18 1 4.3833 2.1989 -5.3759 19 1 6.1337 0.7971 -6.2986 20 6 4.2351 -0.0896 0.0000 21 7 3.5349 -1.2077 0.0046 22 6 2.2111 -1.1996 0.0049 23 7 1.5156 -2.4056 0.0104 24 1 -0.3633 0.0038 1.0276 25 1 -0.3634 0.8880 -0.5173 26 1 -0.3633 -0.8919 -0.5106 27 1 1.6863 2.1388 0.0004 28 1 3.9036 3.1832 0.0713 29 1 6.0928 2.7270 1.9328 30 1 8.5366 2.6373 1.7094 31 1 9.5761 2.1288 -0.4605 32 1 8.1964 1.7031 -2.4268 33 1 7.4249 -0.3351 -4.1096 34 1 5.3141 -0.1354 0.0006 35 1 2.0010 -3.2454 0.0136 36 1 0.5456 -2.4061 0.0103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249788467.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:12 Heat of formation + Delta-G solvation = 42.476675 kcal Electronic energy + Delta-G solvation = -20040.343930 eV Core-core repulsion = 17101.939275 eV Total energy + Delta-G solvation = -2938.404655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20021 -39.62901 -36.79139 -35.52975 -34.69735 -33.91322 -31.44135 -30.77197 -28.63519 -27.67734 -26.84723 -23.89737 -22.96570 -22.79253 -21.40650 -19.16874 -18.63367 -18.19221 -17.47366 -17.25342 -16.77714 -15.93587 -15.64683 -15.41643 -15.14173 -14.69089 -14.46387 -14.26110 -13.83361 -13.55150 -13.51427 -13.38589 -13.02336 -12.84934 -12.66329 -12.58346 -12.37520 -12.14593 -11.50771 -11.41819 -11.07130 -10.48959 -10.26615 -9.72792 -9.28649 -9.16832 -8.60692 -7.60405 -6.28772 0.49347 0.84265 1.00177 1.14422 1.32258 1.43222 1.49405 2.17109 2.75268 2.82787 3.07005 3.21778 3.75098 3.96834 4.19399 4.27769 4.39773 4.49945 4.63695 4.69721 4.82218 4.90625 4.92702 5.14950 5.16862 5.33150 5.35537 5.42588 5.47841 5.62426 5.80294 5.93427 6.09431 6.22187 6.39172 6.56711 6.67003 6.74871 6.89339 6.95278 7.08941 7.36488 7.65431 8.33396 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.007994 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.134988 B = 3501.805688 C = 4630.476478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.161 4.161 3 C -0.124 4.124 4 C 0.133 3.867 5 N -0.664 5.664 6 C 0.009 3.991 7 C -0.096 4.096 8 C -0.233 4.233 9 C -0.111 4.111 10 C -0.180 4.180 11 C 0.084 3.916 12 C -0.459 4.459 13 H 0.068 0.932 14 C 0.035 3.965 15 N -0.821 5.821 16 Si 0.967 3.033 17 H -0.275 1.275 18 H -0.257 1.257 19 H -0.264 1.264 20 C 0.069 3.931 21 N -0.538 5.538 22 C 0.322 3.678 23 N -0.852 5.852 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.401 0.599 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.284 0.716 34 H 0.114 0.886 35 H 0.399 0.601 36 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.402 0.111 3.999 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.168 4.168 3 C -0.155 4.155 4 C 0.027 3.973 5 N -0.290 5.290 6 C -0.086 4.086 7 C -0.116 4.116 8 C -0.253 4.253 9 C -0.130 4.130 10 C -0.201 4.201 11 C 0.080 3.920 12 C -0.488 4.488 13 H 0.086 0.914 14 C -0.179 4.179 15 N -0.447 5.447 16 Si 0.789 3.211 17 H -0.201 1.201 18 H -0.180 1.180 19 H -0.188 1.188 20 C -0.092 4.092 21 N -0.255 5.255 22 C 0.084 3.916 23 N -0.402 5.402 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.172 0.828 28 H 0.237 0.763 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.228 0.772 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.620 -0.826 3.861 11.331 hybrid contribution -0.284 0.491 -0.895 1.059 sum -10.905 -0.335 2.966 11.306 Atomic orbital electron populations 1.20616 0.87639 1.03635 1.03182 1.20288 0.98529 0.90973 1.07004 1.20980 0.90678 0.99330 1.04471 1.18713 0.91669 0.87959 0.98911 1.40794 1.02966 1.04508 1.80729 1.17435 0.82964 1.15950 0.92233 1.21062 0.93809 1.00209 0.96536 1.20591 0.94266 1.12997 0.97461 1.20738 0.98708 0.99873 0.93654 1.21069 0.94052 1.06538 0.98396 1.18138 0.92479 0.89483 0.91906 1.19414 1.01158 1.27223 1.01034 0.91388 1.26616 0.95223 0.92911 1.03200 1.69893 1.21190 1.19532 1.34087 0.85413 0.78870 0.79407 0.77433 1.20075 1.18029 1.18800 1.21488 0.98123 0.86708 1.02855 1.66865 1.07740 1.31696 1.19205 1.18334 0.87665 0.87988 0.97630 1.41916 1.08675 1.03707 1.85908 0.89877 0.90332 0.90677 0.82799 0.76272 0.86926 0.86425 0.87414 0.87888 0.90510 0.86889 0.77228 0.75241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.58 71.24 0.68 -1.10 16 2 C -0.16 -4.87 5.91 -19.65 -0.12 -4.99 16 3 C -0.12 -4.10 9.72 22.57 0.22 -3.88 16 4 C 0.13 5.43 6.11 38.29 0.23 5.66 16 5 N -0.66 -26.84 4.73 -178.95 -0.85 -27.69 16 6 C 0.01 0.40 4.63 39.04 0.18 0.58 16 7 C -0.10 -4.14 9.96 22.38 0.22 -3.91 16 8 C -0.23 -9.92 10.03 22.40 0.22 -9.69 16 9 C -0.11 -5.11 9.96 22.01 0.22 -4.89 16 10 C -0.18 -9.41 8.62 22.46 0.19 -9.21 16 11 C 0.08 4.40 5.07 -21.17 -0.11 4.29 16 12 C -0.46 -24.41 8.03 23.35 0.19 -24.22 16 13 H 0.07 3.61 7.59 -2.91 -0.02 3.58 16 14 C 0.04 1.81 5.21 85.23 0.44 2.26 16 15 N -0.82 -43.80 10.82 21.82 0.24 -43.56 16 16 Si 0.97 40.13 29.58 68.60 2.03 42.16 16 17 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 20 C 0.07 3.22 10.14 84.81 0.86 4.08 16 21 N -0.54 -23.53 10.38 -192.57 -2.00 -25.53 16 22 C 0.32 11.27 7.73 132.98 1.03 12.30 16 23 N -0.85 -21.67 8.99 -55.33 -0.50 -22.16 16 24 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.08 1.32 8.10 -2.38 -0.02 1.31 16 26 H 0.07 1.19 6.56 -2.39 -0.02 1.18 16 27 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 28 H 0.40 13.76 8.85 -92.71 -0.82 12.94 16 29 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 30 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.10 5.67 6.11 -2.91 -0.02 5.65 16 33 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 34 H 0.11 6.13 6.74 -2.91 -0.02 6.11 16 35 H 0.40 9.79 8.95 -92.71 -0.83 8.96 16 36 H 0.41 7.44 6.80 -92.71 -0.63 6.81 16 Total: -1.00 -64.04 304.91 2.26 -61.78 By element: Atomic # 1 Polarization: 48.87 SS G_CDS: -1.14 Total: 47.73 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 4.47 Total: -32.73 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -3.11 Total: -118.94 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -64.04 2.26 -61.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249788467.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.256 kcal (2) G-P(sol) polarization free energy of solvation -64.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds