Wall clock time and date at job start Mon Mar 30 2020 00:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99555 * 2 1 4 4 H 1.08003 * 119.99848 * 203.18181 * 3 2 1 5 5 C 1.38809 * 120.00289 * 23.19400 * 3 2 1 6 6 N 1.31618 * 120.00084 * 13.70469 * 5 3 2 7 7 Si 1.86800 * 120.00141 * 193.71610 * 5 3 2 8 8 H 1.48499 * 109.46824 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47352 * 119.99431 * 7 5 3 10 10 H 1.48508 * 109.46942 * 239.99727 * 7 5 3 11 11 C 1.46502 * 120.00079 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46939 * 89.99957 * 11 2 1 13 13 H 1.09003 * 109.47227 * 60.00391 * 12 11 2 14 14 O 1.42896 * 109.47495 * 299.99934 * 12 11 2 15 15 C 1.52998 * 109.46781 * 179.97438 * 12 11 2 16 16 O 1.42901 * 109.47064 * 184.99988 * 15 12 11 17 17 C 1.35902 * 116.99891 * 179.97438 * 16 15 12 18 18 C 1.38762 * 120.04490 * 359.73025 * 17 16 15 19 19 C 1.38137 * 119.99404 * 179.74789 * 18 17 16 20 20 C 1.38247 * 120.08076 * 0.52203 * 19 18 17 21 21 C 1.38481 * 120.08435 * 359.75042 * 20 19 18 22 22 F 1.35099 * 119.99469 * 179.97438 * 21 20 19 23 23 C 1.38384 * 120.00255 * 359.97438 * 21 20 19 24 24 H 1.09001 * 109.47467 * 275.15601 * 1 2 3 25 25 H 1.09000 * 109.47353 * 35.15923 * 1 2 3 26 26 H 1.09006 * 109.47154 * 155.15298 * 1 2 3 27 27 H 0.97004 * 120.00189 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.46776 * 210.00370 * 11 2 1 29 29 H 1.09003 * 109.46842 * 330.00112 * 11 2 1 30 30 H 0.96696 * 114.00023 * 300.00267 * 14 12 11 31 31 H 1.09000 * 109.47611 * 305.00545 * 15 12 11 32 32 H 1.09000 * 109.47262 * 65.00438 * 15 12 11 33 33 H 1.08002 * 120.00418 * 359.97438 * 18 17 16 34 34 H 1.08005 * 119.95733 * 180.27879 * 19 18 17 35 35 H 1.08000 * 119.95881 * 179.76916 * 20 19 18 36 36 H 1.08004 * 120.03559 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1642 1.2238 -0.3682 5 6 1.5397 2.3395 0.4734 6 7 0.4224 2.2571 1.1642 7 14 2.3044 4.0088 0.1299 8 1 3.5487 3.8299 -0.6606 9 1 1.3458 4.8440 -0.6373 10 1 2.6270 4.6794 1.4151 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 1 3.0417 -0.9498 -1.9568 14 8 1.2040 -1.8803 -2.1170 15 6 3.2181 -3.0344 -1.4438 16 8 3.5579 -3.3876 -2.7861 17 6 4.2460 -4.5460 -2.9640 18 6 4.5918 -5.3238 -1.8681 19 6 5.2866 -6.5037 -2.0505 20 6 5.6477 -6.9057 -3.3230 21 6 5.3091 -6.1291 -4.4185 22 9 5.6633 -6.5234 -5.6612 23 6 4.6081 -4.9494 -4.2403 24 1 -0.3634 0.0924 1.0235 25 1 -0.3634 0.8402 -0.5918 26 1 -0.3634 -0.9326 -0.4318 27 1 -0.0041 3.0633 1.4947 28 1 3.1499 -1.1386 0.5134 29 1 1.6084 -2.0286 0.5129 30 1 0.6268 -2.5432 -1.7138 31 1 4.1288 -2.9281 -0.8544 32 1 2.5935 -3.8152 -1.0098 33 1 4.3146 -5.0086 -0.8730 34 1 5.5516 -7.1110 -1.1975 35 1 6.1941 -7.8267 -3.4630 36 1 4.3435 -4.3435 -5.0944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250802619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:27 Heat of formation + Delta-G solvation = -83.784820 kcal Electronic energy + Delta-G solvation = -19960.245182 eV Core-core repulsion = 16553.303441 eV Total energy + Delta-G solvation = -3406.941740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.11485 -40.23134 -37.94307 -36.70549 -34.72639 -31.60064 -31.13809 -30.18813 -29.37343 -26.13615 -25.62539 -23.24135 -22.71921 -21.50200 -20.69437 -18.63573 -17.10669 -16.76703 -16.45535 -16.24729 -16.06698 -15.71284 -15.63107 -14.87334 -14.37358 -14.27720 -13.98996 -13.57319 -13.31124 -12.96570 -12.79242 -12.28888 -12.09604 -11.86748 -11.38528 -11.17854 -11.00536 -10.87955 -10.71878 -10.44628 -10.37926 -10.05222 -9.91288 -9.63763 -9.10529 -8.55213 -8.45844 -6.75518 -5.74861 -3.22429 0.90938 1.09488 2.96692 3.37270 3.38356 3.44712 3.46725 4.13593 4.46471 4.52510 4.75728 4.78201 4.79421 4.96063 5.08478 5.16078 5.18709 5.40119 5.42610 5.69556 5.73810 5.84760 5.86291 5.92245 6.01339 6.10765 6.44723 6.52071 6.60631 6.79553 7.26934 7.40722 7.70557 7.79155 8.12820 8.36503 9.20172 9.82745 10.30947 11.29214 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036283 B = 0.003351 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.528484 B = 8352.922879 C = 8562.766415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.589 5.589 3 C -0.260 4.260 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.290 1.290 11 C 0.129 3.871 12 C 0.085 3.915 13 H 0.104 0.896 14 O -0.543 6.543 15 C 0.027 3.973 16 O -0.298 6.298 17 C 0.167 3.833 18 C -0.223 4.223 19 C -0.050 4.050 20 C -0.201 4.201 21 C 0.137 3.863 22 F -0.137 7.137 23 C -0.195 4.195 24 H 0.028 0.972 25 H 0.039 0.961 26 H 0.002 0.998 27 H 0.252 0.748 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.361 0.639 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 -17.886 -5.281 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.310 5.310 3 C -0.390 4.390 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.217 1.217 11 C -0.001 4.001 12 C 0.022 3.978 13 H 0.122 0.878 14 O -0.346 6.346 15 C -0.049 4.049 16 O -0.210 6.210 17 C 0.120 3.880 18 C -0.242 4.242 19 C -0.068 4.068 20 C -0.220 4.220 21 C 0.118 3.882 22 F -0.115 7.115 23 C -0.214 4.214 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.021 0.979 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.780 -17.108 -5.761 19.657 hybrid contribution 0.293 0.351 0.189 0.495 sum 8.073 -16.756 -5.571 19.416 Atomic orbital electron populations 1.20784 0.82178 0.95873 0.98964 1.43705 1.02008 1.00031 1.85285 1.19208 0.98420 0.85698 1.35637 0.91452 1.25010 0.97894 0.98585 0.97946 1.70085 1.19978 1.27211 1.37647 0.86186 0.78599 0.84225 0.77523 1.20256 1.21516 1.21711 1.21223 0.97334 0.89841 0.91677 1.23128 0.84201 0.92252 0.98245 0.87770 1.86676 1.28700 1.63092 1.56164 1.23950 1.00280 0.99564 0.81153 1.86251 1.68431 1.35560 1.30760 1.18780 0.90267 0.86045 0.92953 1.21404 1.06156 0.97786 0.98840 1.20779 0.94647 0.94946 0.96471 1.20999 1.06891 1.02187 0.91887 1.17296 0.97477 0.93843 0.79634 1.91507 1.89881 1.90503 1.39640 1.20300 1.05765 0.98268 0.97093 0.95328 0.94199 0.97936 0.93751 0.92322 0.94001 0.79332 0.91052 0.91832 0.84632 0.84775 0.84813 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.06 8.66 59.85 0.52 4.58 16 2 N -0.59 -14.48 2.84 -181.11 -0.51 -14.99 16 3 C -0.26 -7.10 9.65 -15.06 -0.15 -7.24 16 4 H 0.07 1.79 7.87 -52.48 -0.41 1.38 16 5 C 0.00 0.12 5.09 -17.43 -0.09 0.03 16 6 N -0.90 -26.33 10.76 55.49 0.60 -25.73 16 7 Si 0.90 21.87 29.58 -169.99 -5.03 16.85 16 8 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 C 0.13 2.41 5.34 -4.04 -0.02 2.39 16 12 C 0.08 1.42 3.52 -26.73 -0.09 1.33 16 13 H 0.10 2.02 8.14 -51.93 -0.42 1.59 16 14 O -0.54 -9.69 12.11 -40.07 -0.49 -10.18 16 15 C 0.03 0.34 4.38 37.16 0.16 0.51 16 16 O -0.30 -4.35 10.10 -24.27 -0.25 -4.59 16 17 C 0.17 2.12 6.68 -39.23 -0.26 1.85 16 18 C -0.22 -2.33 9.04 -39.42 -0.36 -2.68 16 19 C -0.05 -0.45 10.04 -39.62 -0.40 -0.84 16 20 C -0.20 -1.90 10.02 -39.49 -0.40 -2.30 16 21 C 0.14 1.55 7.30 -39.44 -0.29 1.26 16 22 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 23 C -0.19 -2.40 9.97 -39.37 -0.39 -2.79 16 24 H 0.03 0.75 7.33 -51.93 -0.38 0.37 16 25 H 0.04 1.07 7.37 -51.93 -0.38 0.69 16 26 H 0.00 0.04 7.00 -51.93 -0.36 -0.32 16 27 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 29 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.36 5.05 8.79 45.56 0.40 5.45 16 31 H 0.07 0.82 7.65 -51.93 -0.40 0.42 16 32 H 0.06 0.69 7.67 -51.93 -0.40 0.30 16 33 H 0.14 1.21 6.30 -52.49 -0.33 0.88 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -31.51 310.38 -6.65 -38.16 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -3.93 Total: 1.26 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.76 Total: -3.90 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.08 Total: -40.73 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.73 Total: -14.77 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.51 -6.65 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250802619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.622 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds