Wall clock time and date at job start Mon Mar 30 2020 00:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99555 * 2 1 4 4 H 1.08003 * 119.99848 * 203.18181 * 3 2 1 5 5 C 1.38809 * 120.00289 * 23.19400 * 3 2 1 6 6 N 1.31618 * 120.00084 * 13.70469 * 5 3 2 7 7 Si 1.86800 * 120.00141 * 193.71610 * 5 3 2 8 8 H 1.48499 * 109.46824 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47352 * 119.99431 * 7 5 3 10 10 H 1.48508 * 109.46942 * 239.99727 * 7 5 3 11 11 C 1.46502 * 120.00079 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46939 * 89.99957 * 11 2 1 13 13 H 1.09003 * 109.47227 * 60.00391 * 12 11 2 14 14 O 1.42896 * 109.47495 * 299.99934 * 12 11 2 15 15 C 1.52998 * 109.46781 * 179.97438 * 12 11 2 16 16 O 1.42901 * 109.47064 * 184.99988 * 15 12 11 17 17 C 1.35902 * 116.99891 * 179.97438 * 16 15 12 18 18 C 1.38762 * 120.04490 * 359.73025 * 17 16 15 19 19 C 1.38137 * 119.99404 * 179.74789 * 18 17 16 20 20 C 1.38247 * 120.08076 * 0.52203 * 19 18 17 21 21 C 1.38481 * 120.08435 * 359.75042 * 20 19 18 22 22 F 1.35099 * 119.99469 * 179.97438 * 21 20 19 23 23 C 1.38384 * 120.00255 * 359.97438 * 21 20 19 24 24 H 1.09001 * 109.47467 * 275.15601 * 1 2 3 25 25 H 1.09000 * 109.47353 * 35.15923 * 1 2 3 26 26 H 1.09006 * 109.47154 * 155.15298 * 1 2 3 27 27 H 0.97004 * 120.00189 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.46776 * 210.00370 * 11 2 1 29 29 H 1.09003 * 109.46842 * 330.00112 * 11 2 1 30 30 H 0.96696 * 114.00023 * 300.00267 * 14 12 11 31 31 H 1.09000 * 109.47611 * 305.00545 * 15 12 11 32 32 H 1.09000 * 109.47262 * 65.00438 * 15 12 11 33 33 H 1.08002 * 120.00418 * 359.97438 * 18 17 16 34 34 H 1.08005 * 119.95733 * 180.27879 * 19 18 17 35 35 H 1.08000 * 119.95881 * 179.76916 * 20 19 18 36 36 H 1.08004 * 120.03559 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1642 1.2238 -0.3682 5 6 1.5397 2.3395 0.4734 6 7 0.4224 2.2571 1.1642 7 14 2.3044 4.0088 0.1299 8 1 3.5487 3.8299 -0.6606 9 1 1.3458 4.8440 -0.6373 10 1 2.6270 4.6794 1.4151 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 1 3.0417 -0.9498 -1.9568 14 8 1.2040 -1.8803 -2.1170 15 6 3.2181 -3.0344 -1.4438 16 8 3.5579 -3.3876 -2.7861 17 6 4.2460 -4.5460 -2.9640 18 6 4.5918 -5.3238 -1.8681 19 6 5.2866 -6.5037 -2.0505 20 6 5.6477 -6.9057 -3.3230 21 6 5.3091 -6.1291 -4.4185 22 9 5.6633 -6.5234 -5.6612 23 6 4.6081 -4.9494 -4.2403 24 1 -0.3634 0.0924 1.0235 25 1 -0.3634 0.8402 -0.5918 26 1 -0.3634 -0.9326 -0.4318 27 1 -0.0041 3.0633 1.4947 28 1 3.1499 -1.1386 0.5134 29 1 1.6084 -2.0286 0.5129 30 1 0.6268 -2.5432 -1.7138 31 1 4.1288 -2.9281 -0.8544 32 1 2.5935 -3.8152 -1.0098 33 1 4.3146 -5.0086 -0.8730 34 1 5.5516 -7.1110 -1.1975 35 1 6.1941 -7.8267 -3.4630 36 1 4.3435 -4.3435 -5.0944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250802619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:27 Heat of formation + Delta-G solvation = -104.826473 kcal Electronic energy + Delta-G solvation = -19961.157616 eV Core-core repulsion = 16553.303441 eV Total energy + Delta-G solvation = -3407.854175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.97984 -41.15897 -39.13713 -37.89451 -36.47024 -33.34265 -32.19245 -31.25553 -30.50028 -27.92985 -27.27666 -24.27983 -23.81237 -22.73305 -22.22246 -19.57192 -18.81172 -17.96639 -17.40084 -17.31375 -17.02246 -16.80345 -16.71068 -16.61452 -15.70686 -15.60423 -15.17918 -14.80499 -14.67823 -14.61512 -13.78846 -13.66147 -13.19019 -13.02897 -12.88646 -12.79196 -12.56557 -12.24665 -12.19682 -11.99791 -11.90419 -11.86422 -11.70455 -11.11010 -10.58542 -9.92292 -9.30837 -8.73622 -7.82898 -5.32130 0.10325 0.28952 1.44423 1.47141 1.56614 1.99471 2.50791 2.58762 3.27191 3.33498 3.57241 3.64008 3.79056 3.98846 4.03457 4.06597 4.10194 4.24168 4.40357 4.45507 4.49812 4.54346 4.91497 4.96891 5.00049 5.08907 5.18661 5.23457 5.34234 5.39136 5.62595 5.72770 5.73236 6.31385 6.36974 6.96414 7.14987 7.87226 8.29415 9.19058 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036283 B = 0.003351 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.528484 B = 8352.922879 C = 8562.766415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.610 5.610 3 C -0.265 4.265 4 H 0.069 0.931 5 C -0.053 4.053 6 N -0.936 5.936 7 Si 0.965 3.035 8 H -0.268 1.268 9 H -0.294 1.294 10 H -0.289 1.289 11 C 0.126 3.874 12 C 0.096 3.904 13 H 0.071 0.929 14 O -0.566 6.566 15 C 0.037 3.963 16 O -0.325 6.325 17 C 0.144 3.856 18 C -0.221 4.221 19 C -0.043 4.043 20 C -0.193 4.193 21 C 0.122 3.878 22 F -0.143 7.143 23 C -0.214 4.214 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.039 0.961 27 H 0.248 0.752 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.379 0.621 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.082 -20.147 -4.640 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.332 5.332 3 C -0.395 4.395 4 H 0.087 0.913 5 C -0.248 4.248 6 N -0.583 5.583 7 Si 0.793 3.207 8 H -0.192 1.192 9 H -0.221 1.221 10 H -0.215 1.215 11 C -0.001 4.001 12 C 0.034 3.966 13 H 0.089 0.911 14 O -0.372 6.372 15 C -0.039 4.039 16 O -0.239 6.239 17 C 0.098 3.902 18 C -0.239 4.239 19 C -0.060 4.060 20 C -0.212 4.212 21 C 0.102 3.898 22 F -0.122 7.122 23 C -0.234 4.234 24 H 0.023 0.977 25 H 0.022 0.978 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.227 0.773 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.173 0.827 34 H 0.189 0.811 35 H 0.176 0.824 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.170 -19.419 -5.133 22.080 hybrid contribution -0.089 0.909 -0.057 0.915 sum 9.080 -18.510 -5.190 21.261 Atomic orbital electron populations 1.20507 0.82614 0.96132 0.97064 1.43934 1.02193 1.01397 1.85660 1.19542 0.98553 0.87133 1.34316 0.91319 1.25750 0.98712 1.01796 0.98527 1.70230 1.21374 1.27534 1.39139 0.85239 0.77938 0.80269 0.77217 1.19202 1.22098 1.21543 1.21439 0.97426 0.88070 0.93149 1.22664 0.84191 0.93845 0.95884 0.91089 1.86632 1.29532 1.64152 1.56873 1.23730 1.01038 0.97954 0.81142 1.86165 1.69402 1.36901 1.31387 1.18925 0.91387 0.86091 0.93766 1.21685 1.05589 0.97814 0.98848 1.21221 0.93078 0.94443 0.97301 1.21368 1.05895 1.02467 0.91484 1.17497 0.98113 0.94087 0.80075 1.91487 1.89995 1.90516 1.40211 1.20372 1.06831 0.99019 0.97158 0.97734 0.97822 0.94261 0.94300 0.91747 0.91142 0.77321 0.89250 0.88984 0.82730 0.81081 0.82355 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.91 8.66 127.77 1.11 10.02 16 2 N -0.61 -29.78 2.84 -726.91 -2.07 -31.84 16 3 C -0.27 -14.53 9.65 84.03 0.81 -13.72 16 4 H 0.07 3.65 7.87 -2.91 -0.02 3.63 16 5 C -0.05 -2.97 5.09 84.86 0.43 -2.54 16 6 N -0.94 -55.67 10.76 21.65 0.23 -55.44 16 7 Si 0.96 45.55 29.58 68.60 2.03 47.57 16 8 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 9 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 11 C 0.13 4.50 5.34 86.38 0.46 4.96 16 12 C 0.10 3.12 3.52 30.59 0.11 3.23 16 13 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 14 O -0.57 -19.48 12.11 -144.36 -1.75 -21.23 16 15 C 0.04 0.86 4.38 71.98 0.31 1.18 16 16 O -0.33 -9.12 10.10 -87.82 -0.89 -10.01 16 17 C 0.14 3.45 6.68 22.50 0.15 3.61 16 18 C -0.22 -3.85 9.04 22.37 0.20 -3.65 16 19 C -0.04 -0.58 10.04 22.25 0.22 -0.35 16 20 C -0.19 -3.06 10.02 22.33 0.22 -2.84 16 21 C 0.12 2.61 7.30 22.36 0.16 2.77 16 22 F -0.14 -3.26 17.27 44.97 0.78 -2.48 16 23 C -0.21 -5.22 9.97 22.41 0.22 -5.00 16 24 H 0.00 0.24 7.33 -2.39 -0.02 0.22 16 25 H 0.00 0.16 7.37 -2.39 -0.02 0.15 16 26 H 0.04 1.59 7.00 -2.38 -0.02 1.57 16 27 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 29 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 30 H 0.38 9.71 8.79 -74.06 -0.65 9.06 16 31 H 0.09 1.76 7.65 -2.39 -0.02 1.74 16 32 H 0.09 1.63 7.67 -2.39 -0.02 1.62 16 33 H 0.16 2.05 6.30 -2.91 -0.02 2.03 16 34 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.13 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -69.71 310.38 3.20 -66.51 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.44 Total: 9.25 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 4.42 Total: -2.34 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -1.83 Total: -87.28 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -2.64 Total: -31.24 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -69.71 3.20 -66.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250802619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.314 kcal (2) G-P(sol) polarization free energy of solvation -69.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds