Wall clock time and date at job start Mon Mar 30 2020 00:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99873 * 2 1 4 4 C 1.53003 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46750 * 304.99700 * 4 3 2 6 6 O 1.42898 * 109.47183 * 64.99469 * 4 3 2 7 7 C 1.53003 * 109.47247 * 184.99917 * 4 3 2 8 8 N 1.46501 * 109.47049 * 179.97438 * 7 4 3 9 9 C 1.39774 * 119.99763 * 179.72287 * 8 7 4 10 10 C 1.39415 * 119.91886 * 0.02562 * 9 8 7 11 11 C 1.38364 * 120.46984 * 179.75857 * 10 9 8 12 12 C 1.38009 * 120.28450 * 0.52316 * 11 10 9 13 13 F 1.35103 * 120.08516 * 179.71901 * 12 11 10 14 14 C 1.41009 * 119.82170 * 359.73968 * 12 11 10 15 15 C 1.41291 * 120.22466 * 179.97438 * 14 12 11 16 16 H 1.07998 * 120.00285 * 24.57392 * 15 14 12 17 17 C 1.39919 * 119.99522 * 204.58253 * 15 14 12 18 18 N 1.30859 * 120.00493 * 17.79203 * 17 15 14 19 19 Si 1.86803 * 119.99851 * 197.79081 * 17 15 14 20 20 H 1.48502 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47140 * 119.99866 * 19 17 15 22 22 H 1.48503 * 109.47596 * 239.99942 * 19 17 15 23 23 C 1.38172 * 119.91644 * 180.28112 * 9 8 7 24 24 H 1.09002 * 109.47176 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47031 * 300.00435 * 1 2 3 26 26 H 1.08999 * 109.47036 * 60.00158 * 1 2 3 27 27 H 1.08995 * 109.47260 * 60.00194 * 3 2 1 28 28 H 1.08999 * 109.47048 * 299.99726 * 3 2 1 29 29 H 0.96697 * 113.99677 * 60.00326 * 6 4 3 30 30 H 1.09001 * 109.46913 * 59.99966 * 7 4 3 31 31 H 1.08996 * 109.46700 * 300.00212 * 7 4 3 32 32 H 0.96997 * 119.99891 * 0.02562 * 8 7 4 33 33 H 1.08001 * 119.75983 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.85791 * 180.23758 * 11 10 9 35 35 H 0.96992 * 120.00118 * 179.97438 * 18 17 15 36 36 H 1.07998 * 120.13956 * 359.95453 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8514 0.5682 0.8410 6 8 3.9648 0.5796 -1.2219 7 6 4.1574 2.5769 0.1251 8 7 5.6178 2.4611 0.1250 9 6 6.4098 3.6085 0.2247 10 6 5.8082 4.8622 0.3245 11 6 6.5811 6.0051 0.4287 12 6 7.9584 5.9166 0.4241 13 9 8.7092 7.0357 0.5203 14 6 8.5797 4.6552 0.3182 15 6 9.9890 4.5549 0.3120 16 1 10.5876 5.3290 0.7690 17 6 10.6092 3.4526 -0.2864 18 7 9.9433 2.7046 -1.1287 19 14 12.3878 3.0486 0.1173 20 1 12.9119 4.0400 1.0907 21 1 12.4647 1.6880 0.7073 22 1 13.2005 3.0962 -1.1247 23 6 7.7871 3.4979 0.2187 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.7176 1.0751 -2.0145 30 1 3.8299 3.0384 1.0567 31 1 3.8414 3.1933 -0.7165 32 1 6.0352 1.5886 0.0515 33 1 4.7311 4.9414 0.3249 34 1 6.1046 6.9709 0.5094 35 1 10.3734 1.9407 -1.5438 36 1 8.2527 2.5268 0.1379 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252824985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:48 Heat of formation + Delta-G solvation = -148.677095 kcal Electronic energy + Delta-G solvation = -19990.246532 eV Core-core repulsion = 16580.490851 eV Total energy + Delta-G solvation = -3409.755680 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.03237 -40.00579 -39.19903 -37.72838 -36.12769 -34.92270 -31.86090 -31.58510 -29.39161 -27.40574 -27.17794 -25.40573 -23.54703 -22.50344 -21.86046 -19.22361 -18.27377 -17.78229 -17.54681 -17.51026 -16.98734 -16.71474 -16.34025 -15.92474 -15.80167 -15.45934 -15.17725 -14.72397 -14.34962 -14.25912 -13.93163 -13.56595 -13.39665 -13.18882 -13.02386 -12.74051 -12.61272 -12.48011 -12.20031 -11.98995 -11.78906 -11.26898 -11.13672 -11.04869 -10.65699 -10.39130 -9.44639 -8.70835 -7.89882 -6.40611 0.94741 1.06900 1.37343 1.50447 1.53202 2.20549 2.40878 2.70948 3.04956 3.49466 3.63890 3.93780 3.99160 4.06323 4.20782 4.36702 4.43680 4.45087 4.56799 4.57934 4.66211 4.77490 4.86633 5.05656 5.07839 5.12231 5.24694 5.46119 5.79137 5.84143 6.04055 6.13519 6.19678 6.44120 6.77167 6.81212 6.84913 6.97065 7.13612 8.29004 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.023344 B = 0.004191 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.180786 B = 6679.980979 C = 7721.249721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.036 3.964 4 C 0.107 3.893 5 H 0.098 0.902 6 O -0.568 6.568 7 C 0.107 3.893 8 N -0.746 5.746 9 C 0.222 3.778 10 C -0.273 4.273 11 C -0.084 4.084 12 C -0.107 4.107 13 F -0.178 7.178 14 C 0.090 3.910 15 C -0.497 4.497 16 H 0.067 0.933 17 C 0.040 3.960 18 N -0.811 5.811 19 Si 0.982 3.018 20 H -0.263 1.263 21 H -0.259 1.259 22 H -0.263 1.263 23 C -0.240 4.240 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.386 0.614 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.395 0.605 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.290 0.710 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.622 -5.002 0.834 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.041 4.041 4 C 0.047 3.953 5 H 0.116 0.884 6 O -0.375 6.375 7 C -0.018 4.018 8 N -0.379 5.379 9 C 0.120 3.880 10 C -0.296 4.296 11 C -0.104 4.104 12 C -0.128 4.128 13 F -0.157 7.157 14 C 0.086 3.914 15 C -0.526 4.526 16 H 0.085 0.915 17 C -0.176 4.176 18 N -0.436 5.436 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.183 1.183 22 H -0.188 1.188 23 C -0.265 4.265 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.235 0.765 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.229 0.771 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.458 -5.704 1.082 16.512 hybrid contribution 0.824 0.504 -0.326 1.019 sum -14.634 -5.200 0.756 15.549 Atomic orbital electron populations 1.22945 0.79404 1.03753 1.01029 1.87903 1.21474 1.28133 1.95637 1.23170 0.92891 0.85228 1.02804 1.22017 0.91933 0.93000 0.88321 0.88405 1.86605 1.81501 1.53246 1.16180 1.21834 0.80699 0.96841 1.02436 1.44353 1.04285 1.05795 1.83423 1.17727 0.89868 0.87336 0.93084 1.20077 0.98781 0.89884 1.20826 1.20598 0.90767 0.99281 0.99722 1.18119 0.89490 0.81941 1.23278 1.91198 1.77681 1.51200 1.95632 1.17689 0.94309 0.90047 0.89381 1.19677 0.92116 1.06691 1.34101 0.91498 1.26695 1.05011 0.94054 0.91840 1.69887 1.40401 1.14196 1.19134 0.85165 0.76084 0.79169 0.79327 1.18714 1.18291 1.18752 1.20466 0.90899 0.97865 1.17250 0.88867 0.92896 0.93006 0.90452 0.91024 0.76469 0.90773 0.91469 0.77053 0.84881 0.85395 0.89940 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.58 10.67 -144.34 -1.54 -10.12 16 3 C 0.04 0.61 5.57 71.98 0.40 1.01 16 4 C 0.11 2.33 3.33 30.60 0.10 2.43 16 5 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 6 O -0.57 -14.32 13.05 -144.34 -1.88 -16.20 16 7 C 0.11 2.60 4.57 86.38 0.39 2.99 16 8 N -0.75 -25.85 5.63 -339.52 -1.91 -27.76 16 9 C 0.22 9.72 6.64 38.14 0.25 9.97 16 10 C -0.27 -11.16 9.32 22.58 0.21 -10.95 16 11 C -0.08 -3.78 10.00 22.25 0.22 -3.56 16 12 C -0.11 -5.74 7.31 22.89 0.17 -5.57 16 13 F -0.18 -9.59 16.71 44.97 0.75 -8.84 16 14 C 0.09 5.07 5.58 -21.27 -0.12 4.95 16 15 C -0.50 -28.45 8.78 23.43 0.21 -28.24 16 16 H 0.07 3.87 7.73 -2.91 -0.02 3.84 16 17 C 0.04 2.09 5.14 85.24 0.44 2.53 16 18 N -0.81 -42.73 10.96 21.82 0.24 -42.49 16 19 Si 0.98 39.49 29.59 68.60 2.03 41.52 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 C -0.24 -12.57 8.52 22.84 0.19 -12.37 16 24 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 29 H 0.39 7.24 9.04 -74.06 -0.67 6.57 16 30 H 0.07 1.66 7.95 -2.39 -0.02 1.64 16 31 H 0.07 1.52 7.93 -2.39 -0.02 1.50 16 32 H 0.40 14.09 8.35 -92.71 -0.77 13.31 16 33 H 0.13 4.37 6.70 -2.91 -0.02 4.35 16 34 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 35 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 36 H 0.11 5.93 6.16 -2.91 -0.02 5.91 16 Total: -1.00 -67.20 312.77 1.08 -66.13 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.33 Total: 33.00 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.72 Total: -35.23 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.67 Total: -70.25 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -3.42 Total: -26.32 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 0.75 Total: -8.84 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -67.20 1.08 -66.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252824985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.549 kcal (2) G-P(sol) polarization free energy of solvation -67.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds