Wall clock time and date at job start Mon Mar 30 2020 01:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.41844 * 2 1 4 4 N 1.31857 * 120.76541 * 179.97438 * 3 2 1 5 5 C 1.31889 * 121.72235 * 0.02562 * 4 3 2 6 6 C 1.38180 * 120.76677 * 0.25789 * 5 4 3 7 7 C 1.50695 * 120.41939 * 179.74430 * 6 5 4 8 8 N 1.46503 * 109.47313 * 89.99440 * 7 6 5 9 9 C 1.38824 * 120.00068 * 180.02562 * 8 7 6 10 10 C 1.39790 * 119.58553 * 359.72258 * 9 8 7 11 11 C 1.38595 * 119.48967 * 179.78740 * 10 9 8 12 12 C 1.38390 * 118.68153 * 0.48428 * 11 10 9 13 13 C 1.40553 * 119.14884 * 359.74763 * 12 11 10 14 14 C 1.41318 * 119.78409 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00108 * 0.02562 * 14 13 12 16 16 C 1.40024 * 119.99938 * 180.02562 * 14 13 12 17 17 N 1.30749 * 120.00042 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00016 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47024 * 60.00453 * 18 16 14 20 20 H 1.48498 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.46993 * 300.00106 * 18 16 14 22 22 N 1.31961 * 119.58095 * 180.02562 * 9 8 7 23 23 C 1.38627 * 120.42070 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47018 * 89.99999 * 1 2 3 25 25 H 1.08996 * 109.47152 * 209.99735 * 1 2 3 26 26 H 1.08996 * 109.47147 * 330.00228 * 1 2 3 27 27 H 1.07999 * 119.61954 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.61237 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47428 * 209.99144 * 7 6 5 30 30 H 1.08996 * 109.47062 * 329.99843 * 7 6 5 31 31 H 0.97000 * 119.99710 * 0.02562 * 8 7 6 32 32 H 1.08006 * 120.25321 * 0.02562 * 10 9 8 33 33 H 1.08001 * 120.65871 * 180.22835 * 11 10 9 34 34 H 1.07995 * 120.42405 * 179.76477 * 12 11 10 35 35 H 0.97000 * 119.99809 * 179.97438 * 17 16 14 36 36 H 1.07995 * 120.79071 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.2000 0.0005 5 6 4.2257 0.0824 0.0005 6 6 3.5948 -1.1470 -0.0053 7 6 4.4027 -2.4191 -0.0111 8 7 4.6643 -2.8377 1.3683 9 6 5.3964 -3.9908 1.6167 10 6 5.8749 -4.7490 0.5443 11 6 6.6093 -5.8974 0.7946 12 6 6.8391 -6.2656 2.1086 13 6 6.3273 -5.4642 3.1437 14 6 6.5544 -5.8273 4.4904 15 1 7.1199 -6.7178 4.7215 16 6 6.0462 -5.0325 5.5251 17 7 5.3611 -3.9545 5.2452 18 14 6.3458 -5.5128 7.3053 19 1 7.8068 -5.5526 7.5680 20 1 5.7082 -4.5149 8.2013 21 1 5.7600 -6.8530 7.5615 22 7 5.6267 -4.3604 2.8624 23 6 2.2089 -1.1954 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6675 2.1277 0.0004 28 1 5.3047 0.1287 0.0005 29 1 3.8462 -3.2006 -0.5285 30 1 5.3488 -2.2463 -0.5239 31 1 4.3259 -2.3092 2.1079 32 1 5.6770 -4.4402 -0.4716 33 1 6.9912 -6.4953 -0.0197 34 1 7.4046 -7.1572 2.3359 35 1 5.0088 -3.4041 5.9620 36 1 1.6888 -2.1419 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255104150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:27 Heat of formation + Delta-G solvation = 67.028323 kcal Electronic energy + Delta-G solvation = -19042.292542 eV Core-core repulsion = 16104.952526 eV Total energy + Delta-G solvation = -2937.340016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33990 -38.23267 -35.49562 -33.67104 -33.44215 -31.98745 -30.32814 -28.78502 -27.41544 -25.71422 -25.30986 -23.12598 -21.68086 -21.10241 -20.24932 -17.37072 -17.02315 -16.65588 -16.41637 -15.06672 -14.81586 -14.41925 -14.19942 -13.94887 -13.51980 -13.29642 -13.24468 -13.07019 -12.79636 -12.74550 -12.49943 -12.01641 -11.86007 -11.35373 -11.15232 -11.00365 -10.63450 -10.46876 -9.97888 -9.67765 -9.54922 -9.42744 -8.91505 -8.89401 -7.91307 -7.50941 -6.53739 -6.32270 -4.47331 1.00495 1.22534 2.89402 3.10951 3.13475 3.23537 3.30683 3.66146 3.98915 4.32286 4.44675 4.66653 4.70905 4.84449 4.92072 4.97410 5.13820 5.37785 5.39904 5.59848 5.73209 5.87443 5.90919 6.06464 6.13770 6.15344 6.31756 6.56166 6.65707 6.84853 6.89063 6.92994 7.25208 7.58804 7.80383 7.91063 7.92302 8.16033 8.35023 8.66344 8.80300 9.11367 10.24666 10.40608 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.004392 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.210816 B = 6373.103026 C = 7242.405134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.143 4.143 3 C 0.096 3.904 4 N -0.484 5.484 5 C 0.110 3.890 6 C -0.140 4.140 7 C 0.186 3.814 8 N -0.735 5.735 9 C 0.411 3.589 10 C -0.368 4.368 11 C -0.031 4.031 12 C -0.316 4.316 13 C 0.293 3.707 14 C -0.435 4.435 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.716 5.716 18 Si 0.905 3.095 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.265 1.265 22 N -0.531 5.531 23 C -0.058 4.058 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.157 0.843 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.396 0.604 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.270 0.730 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.815 7.226 -8.104 13.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.145 4.145 3 C -0.062 4.062 4 N -0.192 5.192 5 C -0.047 4.047 6 C -0.143 4.143 7 C 0.060 3.940 8 N -0.373 5.373 9 C 0.171 3.829 10 C -0.394 4.394 11 C -0.056 4.056 12 C -0.339 4.339 13 C 0.166 3.834 14 C -0.467 4.467 15 H 0.101 0.899 16 C -0.154 4.154 17 N -0.338 5.338 18 Si 0.729 3.271 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.190 1.190 22 N -0.252 5.252 23 C -0.085 4.085 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.169 0.831 28 H 0.174 0.826 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.775 8.676 -7.520 13.867 hybrid contribution -0.110 -1.336 0.322 1.378 sum -7.885 7.341 -7.199 12.957 Atomic orbital electron populations 1.20709 0.90244 1.03208 1.02444 1.20932 0.97586 0.94135 1.01836 1.22665 0.90074 0.97361 0.96072 1.67714 1.08274 1.31227 1.11969 1.22739 1.00470 0.87015 0.94469 1.21041 0.94621 0.96850 1.01738 1.19851 0.97453 0.91058 0.85643 1.44120 1.61118 1.27088 1.04943 1.18497 0.88183 0.85440 0.90756 1.20596 1.18604 1.03746 0.96461 1.20593 0.94896 0.94536 0.95559 1.21538 1.14231 1.04909 0.93235 1.18186 0.86337 0.86049 0.92846 1.19556 1.29333 1.08370 0.89421 0.89914 1.26047 0.93876 0.94329 1.01098 1.70142 1.20993 1.09233 1.33411 0.86438 0.79637 0.79290 0.81701 1.18976 1.20360 1.19004 1.68204 1.22584 1.18906 1.15525 1.21483 0.93458 0.98370 0.95174 0.91011 0.91209 0.91233 0.83052 0.82608 0.92040 0.91832 0.76926 0.89190 0.88921 0.88703 0.91886 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.04 36.00 0.36 -0.49 16 2 C -0.14 -1.57 5.90 -104.48 -0.62 -2.19 16 3 C 0.10 1.12 10.86 -17.54 -0.19 0.93 16 4 N -0.48 -6.75 10.36 -13.25 -0.14 -6.89 16 5 C 0.11 1.52 10.86 -17.55 -0.19 1.33 16 6 C -0.14 -1.91 5.27 -104.48 -0.55 -2.46 16 7 C 0.19 2.86 5.03 -5.19 -0.03 2.83 16 8 N -0.74 -14.67 5.71 -61.57 -0.35 -15.02 16 9 C 0.41 10.00 7.65 -155.32 -1.19 8.82 16 10 C -0.37 -8.42 9.34 -38.87 -0.36 -8.78 16 11 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 12 C -0.32 -8.02 9.83 -38.65 -0.38 -8.40 16 13 C 0.29 8.19 6.55 -85.00 -0.56 7.63 16 14 C -0.43 -11.85 9.14 -37.74 -0.34 -12.20 16 15 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 16 C 0.07 1.85 5.50 -17.34 -0.10 1.75 16 17 N -0.72 -19.23 11.46 55.55 0.64 -18.60 16 18 Si 0.91 18.86 29.56 -169.99 -5.02 13.83 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 N -0.53 -14.72 7.89 -10.33 -0.08 -14.80 16 23 C -0.06 -0.72 9.55 -39.28 -0.37 -1.10 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 28 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.06 0.92 7.86 -51.93 -0.41 0.51 16 30 H 0.06 0.95 7.88 -51.93 -0.41 0.54 16 31 H 0.40 8.15 8.58 -40.82 -0.35 7.80 16 32 H 0.09 1.81 6.68 -52.48 -0.35 1.46 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 35 H 0.27 6.63 8.29 -40.82 -0.34 6.29 16 36 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 313.72 15.07 4.73 4.73 Total: -1.00 -30.68 313.72 -9.59 -40.26 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.44 Total: 9.93 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -4.91 Total: -13.45 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.07 Total: -55.30 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.68 -9.59 -40.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255104150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.293 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds