Wall clock time and date at job start Mon Mar 30 2020 01:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.41844 * 2 1 4 4 N 1.31857 * 120.76541 * 179.97438 * 3 2 1 5 5 C 1.31889 * 121.72235 * 0.02562 * 4 3 2 6 6 C 1.38180 * 120.76677 * 0.25789 * 5 4 3 7 7 C 1.50695 * 120.41939 * 179.74430 * 6 5 4 8 8 N 1.46503 * 109.47313 * 89.99440 * 7 6 5 9 9 C 1.38824 * 120.00068 * 180.02562 * 8 7 6 10 10 C 1.39790 * 119.58553 * 359.72258 * 9 8 7 11 11 C 1.38595 * 119.48967 * 179.78740 * 10 9 8 12 12 C 1.38390 * 118.68153 * 0.48428 * 11 10 9 13 13 C 1.40553 * 119.14884 * 359.74763 * 12 11 10 14 14 C 1.41318 * 119.78409 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00108 * 0.02562 * 14 13 12 16 16 C 1.40024 * 119.99938 * 180.02562 * 14 13 12 17 17 N 1.30749 * 120.00042 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00016 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47024 * 60.00453 * 18 16 14 20 20 H 1.48498 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.46993 * 300.00106 * 18 16 14 22 22 N 1.31961 * 119.58095 * 180.02562 * 9 8 7 23 23 C 1.38627 * 120.42070 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47018 * 89.99999 * 1 2 3 25 25 H 1.08996 * 109.47152 * 209.99735 * 1 2 3 26 26 H 1.08996 * 109.47147 * 330.00228 * 1 2 3 27 27 H 1.07999 * 119.61954 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.61237 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47428 * 209.99144 * 7 6 5 30 30 H 1.08996 * 109.47062 * 329.99843 * 7 6 5 31 31 H 0.97000 * 119.99710 * 0.02562 * 8 7 6 32 32 H 1.08006 * 120.25321 * 0.02562 * 10 9 8 33 33 H 1.08001 * 120.65871 * 180.22835 * 11 10 9 34 34 H 1.07995 * 120.42405 * 179.76477 * 12 11 10 35 35 H 0.97000 * 119.99809 * 179.97438 * 17 16 14 36 36 H 1.07995 * 120.79071 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.2000 0.0005 5 6 4.2257 0.0824 0.0005 6 6 3.5948 -1.1470 -0.0053 7 6 4.4027 -2.4191 -0.0111 8 7 4.6643 -2.8377 1.3683 9 6 5.3964 -3.9908 1.6167 10 6 5.8749 -4.7490 0.5443 11 6 6.6093 -5.8974 0.7946 12 6 6.8391 -6.2656 2.1086 13 6 6.3273 -5.4642 3.1437 14 6 6.5544 -5.8273 4.4904 15 1 7.1199 -6.7178 4.7215 16 6 6.0462 -5.0325 5.5251 17 7 5.3611 -3.9545 5.2452 18 14 6.3458 -5.5128 7.3053 19 1 7.8068 -5.5526 7.5680 20 1 5.7082 -4.5149 8.2013 21 1 5.7600 -6.8530 7.5615 22 7 5.6267 -4.3604 2.8624 23 6 2.2089 -1.1954 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6675 2.1277 0.0004 28 1 5.3047 0.1287 0.0005 29 1 3.8462 -3.2006 -0.5285 30 1 5.3488 -2.2463 -0.5239 31 1 4.3259 -2.3092 2.1079 32 1 5.6770 -4.4402 -0.4716 33 1 6.9912 -6.4953 -0.0197 34 1 7.4046 -7.1572 2.3359 35 1 5.0088 -3.4041 5.9620 36 1 1.6888 -2.1419 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255104150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:27 Heat of formation + Delta-G solvation = 49.235776 kcal Electronic energy + Delta-G solvation = -19043.064085 eV Core-core repulsion = 16104.952526 eV Total energy + Delta-G solvation = -2938.111558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33068 -40.06199 -37.01470 -35.25965 -34.53779 -33.37057 -32.19912 -30.50637 -28.20362 -27.33925 -26.90518 -24.14199 -23.40822 -22.54301 -21.78071 -19.26339 -18.20216 -17.88541 -17.64010 -16.73547 -16.49201 -16.04779 -15.30613 -15.26613 -14.99147 -14.81198 -14.54749 -14.10790 -14.00921 -13.70701 -13.62567 -13.54659 -13.18642 -12.83733 -12.73554 -12.61292 -12.32369 -12.22712 -11.77157 -11.30117 -10.70950 -10.69408 -10.44136 -9.84650 -9.83166 -9.44191 -8.31638 -8.22756 -6.47958 0.02632 0.25676 1.07101 1.35202 1.41088 1.53032 1.59356 2.24897 2.53516 2.92816 2.99495 3.43057 3.70783 3.80206 3.99990 4.00841 4.07016 4.25515 4.38808 4.47057 4.59355 4.75815 4.80741 4.83224 4.88011 4.98976 5.01516 5.11294 5.17954 5.26000 5.30113 5.36367 5.71501 5.73432 5.97099 6.06659 6.22090 6.54111 6.81588 6.91755 6.95456 7.20337 8.34349 8.51148 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.004392 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.210816 B = 6373.103026 C = 7242.405134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.137 4.137 3 C 0.091 3.909 4 N -0.506 5.506 5 C 0.096 3.904 6 C -0.148 4.148 7 C 0.189 3.811 8 N -0.730 5.730 9 C 0.394 3.606 10 C -0.365 4.365 11 C -0.029 4.029 12 C -0.343 4.343 13 C 0.260 3.740 14 C -0.473 4.473 15 H 0.087 0.913 16 C 0.027 3.973 17 N -0.754 5.754 18 Si 0.985 3.015 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.259 1.259 22 N -0.566 5.566 23 C -0.067 4.067 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.181 0.819 28 H 0.157 0.843 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.390 0.610 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.275 0.725 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 7.680 -8.710 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C -0.066 4.066 4 N -0.214 5.214 5 C -0.060 4.060 6 C -0.150 4.150 7 C 0.064 3.936 8 N -0.365 5.365 9 C 0.153 3.847 10 C -0.391 4.391 11 C -0.053 4.053 12 C -0.366 4.366 13 C 0.132 3.868 14 C -0.505 4.505 15 H 0.105 0.895 16 C -0.195 4.195 17 N -0.376 5.376 18 Si 0.805 3.195 19 H -0.184 1.184 20 H -0.194 1.194 21 H -0.183 1.183 22 N -0.289 5.289 23 C -0.093 4.093 24 H 0.106 0.894 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.198 0.802 28 H 0.175 0.825 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.224 0.776 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.928 9.146 -8.178 15.174 hybrid contribution 0.162 -1.387 0.339 1.437 sum -8.766 7.759 -7.839 14.089 Atomic orbital electron populations 1.20786 0.87714 1.04131 1.03755 1.21275 0.99343 0.93252 1.00043 1.23217 0.89534 0.98944 0.94924 1.67728 1.09573 1.31307 1.12831 1.22800 1.00785 0.87272 0.95171 1.20847 0.95098 0.95832 1.03234 1.19978 0.98260 0.92178 0.83147 1.44298 1.59876 1.25599 1.06727 1.18948 0.88490 0.86723 0.90493 1.20965 1.17391 1.03179 0.97553 1.21019 0.93901 0.94693 0.95718 1.21701 1.15447 1.05478 0.94023 1.18659 0.87132 0.86909 0.94056 1.19928 1.30861 1.09418 0.90334 0.89511 1.26949 0.93045 0.93875 1.05597 1.70250 1.21948 1.10338 1.35059 0.85235 0.79658 0.79134 0.75467 1.18380 1.19411 1.18304 1.68171 1.23682 1.19523 1.17474 1.21707 0.93082 0.99523 0.95032 0.89357 0.91024 0.89616 0.80210 0.82546 0.91123 0.91194 0.77645 0.86070 0.85171 0.87963 0.91445 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.04 71.23 0.72 -0.63 16 2 C -0.14 -2.72 5.90 -19.77 -0.12 -2.83 16 3 C 0.09 1.94 10.86 84.69 0.92 2.86 16 4 N -0.51 -13.64 10.36 -195.84 -2.03 -15.67 16 5 C 0.10 2.62 10.86 84.67 0.92 3.54 16 6 C -0.15 -3.91 5.27 -19.77 -0.10 -4.01 16 7 C 0.19 5.62 5.03 85.63 0.43 6.05 16 8 N -0.73 -29.18 5.71 -348.72 -1.99 -31.17 16 9 C 0.39 19.30 7.65 133.41 1.02 20.32 16 10 C -0.37 -16.26 9.34 22.73 0.21 -16.05 16 11 C -0.03 -1.31 10.15 22.39 0.23 -1.09 16 12 C -0.34 -17.65 9.83 22.87 0.22 -17.43 16 13 C 0.26 14.97 6.55 40.18 0.26 15.23 16 14 C -0.47 -26.63 9.14 23.46 0.21 -26.42 16 15 H 0.09 4.57 7.85 -2.91 -0.02 4.54 16 16 C 0.03 1.41 5.50 85.29 0.47 1.88 16 17 N -0.75 -41.60 11.46 21.84 0.25 -41.35 16 18 Si 0.98 39.16 29.56 68.60 2.03 41.19 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 22 N -0.57 -32.26 7.89 -186.59 -1.47 -33.73 16 23 C -0.07 -1.56 9.55 22.47 0.21 -1.34 16 24 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 26 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 27 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16 29 H 0.07 1.99 7.86 -2.39 -0.02 1.97 16 30 H 0.07 2.00 7.88 -2.39 -0.02 1.98 16 31 H 0.39 16.40 8.58 -92.71 -0.80 15.60 16 32 H 0.12 4.55 6.68 -2.91 -0.02 4.53 16 33 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 34 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.28 13.81 8.29 -92.71 -0.77 13.04 16 36 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -67.84 313.72 2.70 -65.14 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.30 Total: 35.50 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 5.61 Total: -19.91 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -5.24 Total: -121.92 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -67.84 2.70 -65.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255104150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.376 kcal (2) G-P(sol) polarization free energy of solvation -67.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds