Wall clock time and date at job start Mon Mar 30 2020 00:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47599 * 2 1 4 4 C 1.50704 * 109.47297 * 120.00125 * 2 1 3 5 5 H 1.07996 * 120.00105 * 114.35093 * 4 2 1 6 6 C 1.37876 * 119.99451 * 294.35682 * 4 2 1 7 7 N 1.31517 * 119.99625 * 156.76850 * 6 4 2 8 8 Si 1.86801 * 120.00484 * 336.76514 * 6 4 2 9 9 H 1.48494 * 109.47236 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.47084 * 300.00619 * 8 6 4 11 11 H 1.48503 * 109.47060 * 60.00078 * 8 6 4 12 12 C 1.50706 * 109.47112 * 239.99752 * 2 1 3 13 13 O 1.21280 * 120.00139 * 240.00400 * 12 2 1 14 14 N 1.34781 * 119.99640 * 60.00131 * 12 2 1 15 15 C 1.46504 * 119.99487 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.46516 * 180.02562 * 15 14 12 17 17 H 1.08997 * 110.86477 * 302.64619 * 16 15 14 18 18 C 1.54741 * 110.97280 * 178.80334 * 16 15 14 19 19 C 1.51687 * 102.55055 * 217.67749 * 18 16 15 20 20 C 1.47595 * 125.86631 * 195.36524 * 19 18 16 21 21 N 1.34772 * 120.00055 * 180.02562 * 20 19 18 22 22 O 1.21561 * 119.99307 * 0.02562 * 20 19 18 23 23 N 1.29018 * 108.27210 * 15.38751 * 19 18 16 24 24 O 1.41383 * 112.89290 * 0.31815 * 23 19 18 25 25 H 1.08998 * 109.47689 * 173.08156 * 1 2 3 26 26 H 1.09000 * 109.46584 * 293.08733 * 1 2 3 27 27 H 1.09002 * 109.47001 * 53.08174 * 1 2 3 28 28 H 0.96995 * 120.00186 * 354.92957 * 7 6 4 29 29 H 0.96991 * 120.00291 * 359.97438 * 14 12 2 30 30 H 1.08996 * 109.46974 * 299.99676 * 15 14 12 31 31 H 1.08999 * 109.47383 * 60.00286 * 15 14 12 32 32 H 1.09002 * 110.79329 * 335.94540 * 18 16 15 33 33 H 1.09002 * 110.79327 * 99.41501 * 18 16 15 34 34 H 0.96998 * 120.00366 * 359.97438 * 21 20 19 35 35 H 0.97002 * 119.99198 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5760 -1.6386 1.1340 6 6 1.7978 -0.1754 2.4793 7 7 1.8058 -0.9531 3.5399 8 14 1.4690 1.6540 2.6651 9 1 1.2498 1.9745 4.0984 10 1 2.6361 2.4206 2.1597 11 1 0.2601 2.0214 1.8847 12 6 2.0323 -0.7105 -1.2305 13 8 2.7295 -1.6966 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1946 -0.9410 -3.6508 16 6 1.6852 -0.2193 -4.8999 17 1 0.5966 -0.1643 -4.8997 18 6 2.2057 -0.9041 -6.1862 19 6 2.4779 0.2752 -7.1005 20 6 2.6880 0.2076 -8.5599 21 7 2.9227 1.3351 -9.2599 22 8 2.6492 -0.8652 -9.1303 23 7 2.4947 1.3476 -6.3834 24 8 2.2685 1.0949 -5.0108 25 1 -0.3634 -1.0201 -0.1238 26 1 -0.3632 0.4030 0.9454 27 1 -0.3633 0.6173 -0.8216 28 1 1.9032 -1.9126 3.4370 29 1 1.1488 0.5384 -2.5436 30 1 3.2846 -0.9414 -3.6509 31 1 1.8308 -1.9685 -3.6506 32 1 3.1228 -1.4581 -5.9857 33 1 1.4437 -1.5565 -6.6127 34 1 2.9533 2.1911 -8.8047 35 1 3.0604 1.2905 -10.2191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261738701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:33 Heat of formation + Delta-G solvation = -57.551955 kcal Electronic energy + Delta-G solvation = -19984.688701 eV Core-core repulsion = 16598.804465 eV Total energy + Delta-G solvation = -3385.884236 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.03172 -39.58607 -38.81253 -34.95574 -34.30993 -33.77119 -33.14561 -31.66186 -30.69940 -26.54791 -24.94692 -24.82702 -22.62879 -21.82362 -20.40267 -19.35283 -18.31398 -17.69924 -17.40186 -16.74402 -16.36065 -15.85035 -15.50381 -15.34790 -14.66784 -14.44399 -14.02475 -13.69538 -13.46381 -13.15758 -12.83559 -12.64655 -12.21521 -11.98919 -11.76491 -11.46285 -11.42578 -11.01671 -11.00948 -10.51918 -10.40404 -10.20561 -10.04580 -9.84336 -8.93645 -8.78491 -8.66300 -8.13809 -6.45394 -4.00805 0.43644 2.19151 2.46357 2.78336 3.37496 3.44723 3.48167 3.54544 3.62888 3.82009 3.99121 4.20548 4.40294 4.52261 4.67050 4.88380 5.12518 5.21998 5.23657 5.53244 5.66795 5.97593 6.03803 6.20280 6.41356 6.42633 6.52234 6.70957 6.83959 6.92070 7.23942 7.47101 7.80327 8.23655 8.48890 9.06026 9.07691 9.65085 10.94173 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044832 B = 0.003420 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.410344 B = 8186.170526 C = 8539.879204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.005 3.995 3 H 0.045 0.955 4 C -0.597 4.597 5 H 0.075 0.925 6 C 0.036 3.964 7 N -0.898 5.898 8 Si 1.034 2.966 9 H -0.284 1.284 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.528 3.472 13 O -0.536 6.536 14 N -0.746 5.746 15 C 0.128 3.872 16 C 0.032 3.968 17 H 0.103 0.897 18 C -0.127 4.127 19 C 0.042 3.958 20 C 0.599 3.401 21 N -0.833 5.833 22 O -0.517 6.517 23 N -0.241 5.241 24 O -0.169 6.169 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.026 0.974 28 H 0.271 0.729 29 H 0.399 0.601 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.412 0.588 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 6.347 -24.733 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.017 4.017 3 H 0.062 0.938 4 C -0.634 4.634 5 H 0.093 0.907 6 C -0.170 4.170 7 N -0.531 5.531 8 Si 0.862 3.138 9 H -0.210 1.210 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.317 3.683 13 O -0.410 6.410 14 N -0.402 5.402 15 C 0.003 3.997 16 C -0.027 4.027 17 H 0.120 0.880 18 C -0.167 4.167 19 C -0.153 4.153 20 C 0.380 3.620 21 N -0.398 5.398 22 O -0.389 6.389 23 N 0.017 4.983 24 O -0.192 6.192 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.233 0.767 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.242 0.758 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.629 7.189 -23.549 24.676 hybrid contribution -0.071 -1.245 -1.331 1.823 sum -1.700 5.945 -24.880 25.637 Atomic orbital electron populations 1.22109 0.97045 1.00277 1.00329 1.19172 0.93607 0.96891 0.92018 0.93757 1.21892 1.40498 1.11441 0.89587 0.90660 1.25705 0.93567 1.05663 0.92029 1.70821 1.43904 1.06519 1.31823 0.84186 0.77099 0.76213 0.76299 1.20973 1.20929 1.20294 1.21519 0.78600 0.84287 0.83858 1.90563 1.37346 1.26605 1.86527 1.46213 1.55868 1.32846 1.05223 1.21275 1.00218 0.95932 0.82315 1.24152 0.99626 0.83222 0.95696 0.87974 1.22827 1.05352 0.97778 0.90705 1.25848 0.99321 0.94338 0.95776 1.16855 0.76804 0.84628 0.83699 1.43675 1.73705 1.09619 1.12791 1.90919 1.49975 1.28417 1.69594 1.78303 1.06784 1.22277 0.90974 1.91359 1.80276 1.33696 1.13911 0.93456 0.92019 0.95491 0.91930 0.76681 0.90781 0.89739 0.86668 0.86563 0.75823 0.75466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.77 37.16 0.33 -2.55 16 2 C 0.00 0.12 2.23 -92.92 -0.21 -0.09 16 3 H 0.04 1.01 6.71 -51.93 -0.35 0.66 16 4 C -0.60 -17.29 8.57 -34.44 -0.30 -17.59 16 5 H 0.08 2.47 7.02 -52.49 -0.37 2.10 16 6 C 0.04 1.05 5.19 -17.82 -0.09 0.95 16 7 N -0.90 -27.77 13.70 55.43 0.76 -27.01 16 8 Si 1.03 24.54 26.45 -169.99 -4.50 20.04 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -5.90 6.16 56.52 0.35 -5.56 16 12 C 0.53 11.67 7.14 -10.98 -0.08 11.59 16 13 O -0.54 -13.95 15.47 5.56 0.09 -13.86 16 14 N -0.75 -12.10 5.45 -60.29 -0.33 -12.43 16 15 C 0.13 1.68 5.37 -4.04 -0.02 1.66 16 16 C 0.03 0.32 3.84 -25.82 -0.10 0.22 16 17 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.13 -1.06 6.45 -26.48 -0.17 -1.23 16 19 C 0.04 0.38 7.29 -79.47 -0.58 -0.20 16 20 C 0.60 5.04 8.09 -12.44 -0.10 4.94 16 21 N -0.83 -3.96 8.87 30.47 0.27 -3.69 16 22 O -0.52 -5.93 17.79 5.31 0.09 -5.84 16 23 N -0.24 -2.49 12.15 35.28 0.43 -2.06 16 24 O -0.17 -2.06 12.22 -11.37 -0.14 -2.20 16 25 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 26 H 0.06 1.33 5.49 -51.93 -0.28 1.05 16 27 H 0.03 0.44 7.76 -51.93 -0.40 0.03 16 28 H 0.27 8.43 8.73 -40.82 -0.36 8.07 16 29 H 0.40 5.55 8.03 -40.82 -0.33 5.22 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.12 0.92 7.91 -51.93 -0.41 0.51 16 33 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.41 1.42 8.51 -40.82 -0.35 1.08 16 35 H 0.41 1.16 8.93 -40.82 -0.36 0.80 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -36.36 305.21 -4.22 -40.58 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.17 Total: 4.17 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.32 Total: -2.30 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 1.13 Total: -45.19 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.04 Total: -21.90 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.50 Total: 20.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.36 -4.22 -40.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261738701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.970 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds