Wall clock time and date at job start Mon Mar 30 2020 00:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47599 * 2 1 4 4 C 1.50704 * 109.47297 * 120.00125 * 2 1 3 5 5 H 1.07996 * 120.00105 * 114.35093 * 4 2 1 6 6 C 1.37876 * 119.99451 * 294.35682 * 4 2 1 7 7 N 1.31517 * 119.99625 * 156.76850 * 6 4 2 8 8 Si 1.86801 * 120.00484 * 336.76514 * 6 4 2 9 9 H 1.48494 * 109.47236 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.47084 * 300.00619 * 8 6 4 11 11 H 1.48503 * 109.47060 * 60.00078 * 8 6 4 12 12 C 1.50706 * 109.47112 * 239.99752 * 2 1 3 13 13 O 1.21280 * 120.00139 * 240.00400 * 12 2 1 14 14 N 1.34781 * 119.99640 * 60.00131 * 12 2 1 15 15 C 1.46504 * 119.99487 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.46516 * 180.02562 * 15 14 12 17 17 H 1.08997 * 110.86477 * 302.64619 * 16 15 14 18 18 C 1.54741 * 110.97280 * 178.80334 * 16 15 14 19 19 C 1.51687 * 102.55055 * 217.67749 * 18 16 15 20 20 C 1.47595 * 125.86631 * 195.36524 * 19 18 16 21 21 N 1.34772 * 120.00055 * 180.02562 * 20 19 18 22 22 O 1.21561 * 119.99307 * 0.02562 * 20 19 18 23 23 N 1.29018 * 108.27210 * 15.38751 * 19 18 16 24 24 O 1.41383 * 112.89290 * 0.31815 * 23 19 18 25 25 H 1.08998 * 109.47689 * 173.08156 * 1 2 3 26 26 H 1.09000 * 109.46584 * 293.08733 * 1 2 3 27 27 H 1.09002 * 109.47001 * 53.08174 * 1 2 3 28 28 H 0.96995 * 120.00186 * 354.92957 * 7 6 4 29 29 H 0.96991 * 120.00291 * 359.97438 * 14 12 2 30 30 H 1.08996 * 109.46974 * 299.99676 * 15 14 12 31 31 H 1.08999 * 109.47383 * 60.00286 * 15 14 12 32 32 H 1.09002 * 110.79329 * 335.94540 * 18 16 15 33 33 H 1.09002 * 110.79327 * 99.41501 * 18 16 15 34 34 H 0.96998 * 120.00366 * 359.97438 * 21 20 19 35 35 H 0.97002 * 119.99198 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5760 -1.6386 1.1340 6 6 1.7978 -0.1754 2.4793 7 7 1.8058 -0.9531 3.5399 8 14 1.4690 1.6540 2.6651 9 1 1.2498 1.9745 4.0984 10 1 2.6361 2.4206 2.1597 11 1 0.2601 2.0214 1.8847 12 6 2.0323 -0.7105 -1.2305 13 8 2.7295 -1.6966 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1946 -0.9410 -3.6508 16 6 1.6852 -0.2193 -4.8999 17 1 0.5966 -0.1643 -4.8997 18 6 2.2057 -0.9041 -6.1862 19 6 2.4779 0.2752 -7.1005 20 6 2.6880 0.2076 -8.5599 21 7 2.9227 1.3351 -9.2599 22 8 2.6492 -0.8652 -9.1303 23 7 2.4947 1.3476 -6.3834 24 8 2.2685 1.0949 -5.0108 25 1 -0.3634 -1.0201 -0.1238 26 1 -0.3632 0.4030 0.9454 27 1 -0.3633 0.6173 -0.8216 28 1 1.9032 -1.9126 3.4370 29 1 1.1488 0.5384 -2.5436 30 1 3.2846 -0.9414 -3.6509 31 1 1.8308 -1.9685 -3.6506 32 1 3.1228 -1.4581 -5.9857 33 1 1.4437 -1.5565 -6.6127 34 1 2.9533 2.1911 -8.8047 35 1 3.0604 1.2905 -10.2191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261738701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:32 Heat of formation + Delta-G solvation = -90.424592 kcal Electronic energy + Delta-G solvation = -19986.114166 eV Core-core repulsion = 16598.804465 eV Total energy + Delta-G solvation = -3387.309701 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.80409 -40.66794 -40.11489 -36.17812 -35.78068 -35.10274 -33.88347 -33.36328 -32.02652 -27.63926 -26.79644 -25.65779 -24.13902 -22.96503 -21.12264 -20.98779 -19.51850 -18.98517 -18.34336 -17.97857 -17.41985 -16.97522 -16.60405 -16.30650 -15.86608 -15.69879 -15.31274 -15.03490 -14.75514 -14.43473 -14.10316 -14.06638 -13.65647 -13.32540 -13.05545 -12.93109 -12.88678 -12.35027 -12.17618 -11.97987 -11.72721 -11.64862 -11.04882 -10.96700 -10.79768 -10.61534 -10.34540 -10.10490 -8.77259 -6.33153 -0.26471 1.44903 1.50315 1.59547 1.76146 1.80039 1.84079 2.09090 2.29435 2.55286 3.04298 3.04826 3.35885 3.36796 3.61853 3.84960 4.16671 4.23068 4.33607 4.48817 4.51216 4.67878 4.70503 4.74646 4.87630 5.17874 5.42956 5.54008 5.56333 5.78134 5.87853 6.08032 6.14151 6.62843 6.68827 6.96533 7.38876 7.47376 8.61081 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044832 B = 0.003420 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.410344 B = 8186.170526 C = 8539.879204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.003 4.003 3 H 0.065 0.935 4 C -0.609 4.609 5 H 0.016 0.984 6 C -0.016 4.016 7 N -0.931 5.931 8 Si 1.081 2.919 9 H -0.290 1.290 10 H -0.266 1.266 11 H -0.228 1.228 12 C 0.526 3.474 13 O -0.589 6.589 14 N -0.722 5.722 15 C 0.126 3.874 16 C 0.042 3.958 17 H 0.126 0.874 18 C -0.127 4.127 19 C 0.053 3.947 20 C 0.600 3.400 21 N -0.810 5.810 22 O -0.551 6.551 23 N -0.248 5.248 24 O -0.196 6.196 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.250 0.750 29 H 0.415 0.585 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.421 0.579 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 9.074 -27.330 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.025 4.025 3 H 0.083 0.917 4 C -0.647 4.647 5 H 0.034 0.966 6 C -0.214 4.214 7 N -0.566 5.566 8 Si 0.900 3.100 9 H -0.216 1.216 10 H -0.191 1.191 11 H -0.151 1.151 12 C 0.315 3.685 13 O -0.468 6.468 14 N -0.376 5.376 15 C 0.001 3.999 16 C -0.017 4.017 17 H 0.144 0.856 18 C -0.167 4.167 19 C -0.142 4.142 20 C 0.381 3.619 21 N -0.376 5.376 22 O -0.426 6.426 23 N 0.007 4.993 24 O -0.218 6.218 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.252 0.748 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.252 0.748 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.161 9.975 -26.219 28.230 hybrid contribution 0.482 -2.159 -0.642 2.303 sum -2.679 7.816 -26.861 28.103 Atomic orbital electron populations 1.21977 0.94159 1.00805 1.02114 1.19168 0.95749 0.97058 0.90518 0.91716 1.21990 1.40120 1.09829 0.92772 0.96575 1.27402 0.92484 1.10103 0.91411 1.70970 1.47021 1.05542 1.33079 0.83646 0.79607 0.69897 0.76838 1.21632 1.19111 1.15127 1.21254 0.78246 0.83635 0.85369 1.90551 1.39885 1.28930 1.87451 1.45856 1.54569 1.32760 1.04393 1.21420 0.99555 0.96602 0.82325 1.24092 1.00597 0.82548 0.94435 0.85621 1.22886 1.06191 0.97813 0.89835 1.26019 0.97824 0.94270 0.96082 1.16821 0.76798 0.84889 0.83418 1.43572 1.71559 1.09062 1.13401 1.90916 1.51981 1.29718 1.69975 1.78334 1.08170 1.22555 0.90202 1.91333 1.80848 1.34380 1.15227 0.94617 0.92764 0.90116 0.94118 0.74797 0.92167 0.89111 0.86401 0.84476 0.74751 0.74090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.77 71.98 0.63 -4.44 16 2 C 0.00 -0.14 2.23 -12.28 -0.03 -0.17 16 3 H 0.07 2.74 6.71 -2.39 -0.02 2.72 16 4 C -0.61 -36.41 8.57 25.60 0.22 -36.19 16 5 H 0.02 1.12 7.02 -2.91 -0.02 1.10 16 6 C -0.02 -0.94 5.19 84.65 0.44 -0.50 16 7 N -0.93 -59.88 13.70 21.45 0.29 -59.59 16 8 Si 1.08 47.96 26.45 68.60 1.81 49.78 16 9 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.23 -8.35 6.16 99.48 0.61 -7.74 16 12 C 0.53 23.01 7.14 87.66 0.63 23.63 16 13 O -0.59 -31.70 15.47 -3.03 -0.05 -31.75 16 14 N -0.72 -21.83 5.45 -463.05 -2.52 -24.35 16 15 C 0.13 3.09 5.37 86.38 0.46 3.55 16 16 C 0.04 0.72 3.84 31.19 0.12 0.84 16 17 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 18 C -0.13 -1.82 6.45 30.76 0.20 -1.62 16 19 C 0.05 0.83 7.29 45.76 0.33 1.16 16 20 C 0.60 8.76 8.09 86.71 0.70 9.46 16 21 N -0.81 -5.65 8.87 -175.80 -1.56 -7.21 16 22 O -0.55 -11.68 17.79 -3.91 -0.07 -11.75 16 23 N -0.25 -4.52 12.15 -42.29 -0.51 -5.04 16 24 O -0.20 -4.29 12.22 -38.30 -0.47 -4.76 16 25 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 26 H 0.05 2.15 5.49 -2.39 -0.01 2.14 16 27 H 0.08 2.22 7.76 -2.39 -0.02 2.20 16 28 H 0.25 16.61 8.73 -92.71 -0.81 15.80 16 29 H 0.42 9.95 8.03 -92.71 -0.74 9.21 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 32 H 0.12 1.66 7.91 -2.39 -0.02 1.64 16 33 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.42 1.76 8.51 -92.71 -0.79 0.97 16 35 H 0.42 1.31 8.93 -92.71 -0.83 0.49 16 Total: -1.00 -84.25 305.21 -0.70 -84.95 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -1.33 Total: 13.99 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 3.71 Total: -4.27 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -4.30 Total: -96.19 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.58 Total: -48.26 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.81 Total: 49.78 kcal Total: -84.25 -0.70 -84.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261738701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.480 kcal (2) G-P(sol) polarization free energy of solvation -84.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds