Wall clock time and date at job start Mon Mar 30 2020 00:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.50699 * 109.47078 * 239.99506 * 2 1 3 13 13 O 1.21282 * 120.00041 * 239.99948 * 12 2 1 14 14 N 1.34779 * 120.00037 * 60.00381 * 12 2 1 15 15 C 1.46500 * 120.00169 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47364 * 179.97438 * 15 14 12 17 17 H 1.09001 * 110.85477 * 56.19431 * 16 15 14 18 18 C 1.54734 * 110.97688 * 179.97438 * 16 15 14 19 19 C 1.51692 * 102.54502 * 142.32622 * 18 16 15 20 20 C 1.47595 * 125.85843 * 164.58088 * 19 18 16 21 21 N 1.34778 * 119.99685 * 179.97438 * 20 19 18 22 22 O 1.21550 * 120.00380 * 359.97438 * 20 19 18 23 23 N 1.29009 * 108.27695 * 344.61165 * 19 18 16 24 24 O 1.41387 * 112.88840 * 359.68509 * 23 19 18 25 25 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 27 27 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 28 28 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 29 29 H 0.96996 * 119.99844 * 359.97438 * 14 12 2 30 30 H 1.09004 * 109.46923 * 300.00119 * 15 14 12 31 31 H 1.09004 * 109.47042 * 59.99705 * 15 14 12 32 32 H 1.08994 * 110.79559 * 260.59015 * 18 16 15 33 33 H 1.08999 * 110.78993 * 23.87337 * 18 16 15 34 34 H 0.96995 * 120.00086 * 359.97438 * 21 20 19 35 35 H 0.96997 * 119.99778 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8299 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.8074 -1.1187 4.0078 10 1 1.8270 -0.4195 5.2204 11 1 1.8281 -2.5196 4.0084 12 6 2.0323 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1190 14 7 1.7068 -0.2501 -2.4546 15 6 2.1946 -0.9411 -3.6507 16 6 1.6843 -0.2203 -4.9000 17 1 1.9789 0.8291 -4.8901 18 6 2.1807 -0.9224 -6.1863 19 6 0.9849 -0.7993 -7.1114 20 6 0.9968 -1.0088 -8.5724 21 7 -0.1401 -0.8683 -9.2825 22 8 2.0318 -1.3080 -9.1351 23 7 -0.0441 -0.4795 -6.4021 24 8 0.2541 -0.3548 -5.0256 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7082 1.1611 3.4843 29 1 1.1488 0.5383 -2.5436 30 1 3.2846 -0.9416 -3.6508 31 1 1.8308 -1.9687 -3.6504 32 1 3.0455 -0.4044 -6.6008 33 1 2.4157 -1.9685 -5.9900 34 1 -0.9661 -0.6299 -8.8334 35 1 -0.1323 -1.0056 -10.2427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261738702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:34 Heat of formation + Delta-G solvation = -57.977698 kcal Electronic energy + Delta-G solvation = -19945.195321 eV Core-core repulsion = 16559.292623 eV Total energy + Delta-G solvation = -3385.902698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.96787 -39.52617 -38.66558 -34.87304 -34.23998 -33.71263 -33.07979 -31.45704 -30.18569 -26.40821 -25.10227 -24.88080 -22.62916 -21.84304 -20.35751 -19.36495 -18.25442 -17.63647 -16.86746 -16.27761 -16.17560 -15.68583 -15.46066 -15.11931 -14.61964 -14.50322 -14.14078 -13.77898 -13.34254 -12.94177 -12.84818 -12.28748 -12.15538 -11.96348 -11.45165 -11.34622 -10.98160 -10.96498 -10.71651 -10.66598 -10.36202 -10.23127 -9.98704 -9.93947 -8.96607 -8.64079 -8.52815 -8.31488 -6.01294 -4.04595 0.49331 2.25175 2.51295 2.84028 3.37646 3.39991 3.44835 3.59812 3.71258 3.88995 4.04701 4.28387 4.46388 4.51628 4.75640 4.94483 5.19070 5.28032 5.31916 5.62497 5.76344 6.08099 6.25160 6.46974 6.66523 6.76766 6.86976 6.93768 7.00373 7.49673 7.51513 7.78367 7.99365 8.15032 8.43333 9.03892 9.20830 9.60793 11.06285 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.056229 B = 0.003200 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.842674 B = 8747.279272 C = 9076.802311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.502 4.502 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.546 6.546 14 N -0.745 5.745 15 C 0.128 3.872 16 C 0.032 3.968 17 H 0.102 0.898 18 C -0.126 4.126 19 C 0.041 3.959 20 C 0.599 3.401 21 N -0.833 5.833 22 O -0.517 6.517 23 N -0.241 5.241 24 O -0.167 6.167 25 H 0.031 0.969 26 H 0.093 0.907 27 H 0.013 0.987 28 H 0.261 0.739 29 H 0.400 0.600 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.412 0.588 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.724 0.689 -21.808 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.422 6.422 14 N -0.400 5.400 15 C 0.002 3.998 16 C -0.027 4.027 17 H 0.120 0.880 18 C -0.167 4.167 19 C -0.154 4.154 20 C 0.381 3.619 21 N -0.398 5.398 22 O -0.390 6.390 23 N 0.017 4.983 24 O -0.191 6.191 25 H 0.050 0.950 26 H 0.111 0.889 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.234 0.766 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.242 0.758 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.707 0.093 -21.630 21.799 hybrid contribution 0.416 -0.070 0.645 0.771 sum -2.290 0.023 -20.985 21.109 Atomic orbital electron populations 1.21744 0.96426 0.99888 1.01011 1.18866 0.94220 0.96811 0.89154 0.92948 1.21112 1.31199 1.12711 0.89031 0.90843 1.24950 0.95095 0.95084 0.99102 1.69862 1.37006 1.23122 1.23639 0.86504 0.79260 0.79721 0.81629 1.20199 1.21386 1.20208 1.22024 0.78296 0.84241 0.84319 1.90533 1.38054 1.26870 1.86732 1.46220 1.55748 1.32905 1.05168 1.21258 0.99450 0.96586 0.82459 1.24154 0.81564 1.01287 0.95692 0.87990 1.22819 0.98120 1.05130 0.90583 1.25831 0.95417 0.98395 0.95764 1.16858 0.84208 0.77175 0.83706 1.43677 1.11337 1.72268 1.12534 1.90912 1.31333 1.46573 1.70153 1.78296 1.22534 1.06399 0.91093 1.91371 1.22609 1.91599 1.13508 0.95000 0.88854 0.96756 0.92906 0.76596 0.89823 0.90907 0.86632 0.86713 0.75821 0.75503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.87 37.16 0.33 -2.76 16 2 C 0.03 0.76 2.64 -92.92 -0.25 0.52 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.32 8.37 -34.44 -0.29 -14.61 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.80 7.15 -10.99 -0.08 11.72 16 13 O -0.55 -14.12 15.46 5.56 0.09 -14.03 16 14 N -0.75 -12.70 5.45 -60.29 -0.33 -13.02 16 15 C 0.13 1.75 5.36 -4.04 -0.02 1.73 16 16 C 0.03 0.34 3.84 -25.82 -0.10 0.24 16 17 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 18 C -0.13 -1.11 6.45 -26.48 -0.17 -1.28 16 19 C 0.04 0.39 7.29 -79.47 -0.58 -0.19 16 20 C 0.60 5.24 8.09 -12.44 -0.10 5.14 16 21 N -0.83 -4.23 8.87 30.47 0.27 -3.95 16 22 O -0.52 -6.08 17.79 5.32 0.09 -5.98 16 23 N -0.24 -2.61 12.15 35.28 0.43 -2.19 16 24 O -0.17 -2.16 12.23 -11.37 -0.14 -2.30 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 27 H 0.01 0.27 7.56 -51.93 -0.39 -0.12 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.40 6.07 7.89 -40.82 -0.32 5.75 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.11 0.95 7.91 -51.93 -0.41 0.54 16 34 H 0.41 1.57 8.51 -40.82 -0.35 1.22 16 35 H 0.41 1.28 8.93 -40.82 -0.36 0.91 16 LS Contribution 308.27 15.07 4.65 4.65 Total: -1.00 -34.36 308.27 -4.86 -39.22 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -4.18 Total: 3.34 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.35 Total: 2.03 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 1.00 Total: -43.82 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.04 Total: -22.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.36 -4.86 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261738702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.760 kcal (2) G-P(sol) polarization free energy of solvation -34.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds