Wall clock time and date at job start Mon Mar 30 2020 00:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46990 * 2 1 4 4 C 1.50696 * 109.47154 * 239.99946 * 2 1 3 5 5 H 1.08003 * 120.00438 * 245.64173 * 4 2 1 6 6 C 1.37876 * 120.00229 * 65.64770 * 4 2 1 7 7 N 1.31512 * 120.00338 * 197.45388 * 6 4 2 8 8 Si 1.86799 * 119.99906 * 17.45114 * 6 4 2 9 9 H 1.48501 * 109.47295 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47388 * 300.00296 * 8 6 4 11 11 H 1.48505 * 109.47043 * 59.99935 * 8 6 4 12 12 C 1.50696 * 109.46960 * 120.00042 * 2 1 3 13 13 O 1.21286 * 120.00022 * 120.00459 * 12 2 1 14 14 N 1.34781 * 120.00215 * 299.99457 * 12 2 1 15 15 C 1.46497 * 120.00264 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.47268 * 180.02562 * 15 14 12 17 17 H 1.08992 * 110.86276 * 56.19748 * 16 15 14 18 18 C 1.54734 * 110.97371 * 180.02562 * 16 15 14 19 19 C 1.51693 * 102.54970 * 142.32417 * 18 16 15 20 20 C 1.47586 * 125.86458 * 164.57573 * 19 18 16 21 21 N 1.34774 * 119.99912 * 179.97438 * 20 19 18 22 22 O 1.21552 * 120.00407 * 359.97438 * 20 19 18 23 23 N 1.29016 * 108.27435 * 344.60644 * 19 18 16 24 24 O 1.41394 * 112.88735 * 359.68397 * 23 19 18 25 25 H 1.08998 * 109.47315 * 306.34698 * 1 2 3 26 26 H 1.09001 * 109.46632 * 66.34760 * 1 2 3 27 27 H 1.09003 * 109.46856 * 186.34632 * 1 2 3 28 28 H 0.97000 * 119.99661 * 354.94789 * 7 6 4 29 29 H 0.96998 * 119.99384 * 0.02562 * 14 12 2 30 30 H 1.09003 * 109.47424 * 300.00834 * 15 14 12 31 31 H 1.09002 * 109.46630 * 60.00835 * 15 14 12 32 32 H 1.09010 * 110.79096 * 260.58217 * 18 16 15 33 33 H 1.08993 * 110.80141 * 23.86151 * 18 16 15 34 34 H 0.97006 * 120.00522 * 359.97438 * 21 20 19 35 35 H 0.97007 * 120.00063 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5761 -1.6386 -1.1340 6 6 1.7980 -0.1754 -2.4794 7 7 1.9176 -0.9289 -3.5506 8 14 1.3104 1.6197 -2.6500 9 1 1.1168 1.9458 -4.0857 10 1 0.0440 1.8610 -1.9129 11 1 2.3823 2.4795 -2.0868 12 6 2.0323 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1946 -0.9408 3.6508 16 6 1.6843 -0.2198 4.9000 17 1 0.5968 -0.1476 4.8895 18 6 2.1808 -0.9220 6.1864 19 6 2.4626 0.2465 7.1118 20 6 2.6556 0.1653 8.5728 21 7 2.9014 1.2840 9.2832 22 8 2.5929 -0.9103 9.1354 23 7 2.5039 1.3234 6.4027 24 8 2.2875 1.0840 5.0261 25 1 -0.3634 0.6091 0.8277 26 1 -0.3633 0.4123 -0.9414 27 1 -0.3633 -1.0214 0.1136 28 1 2.2413 -1.8397 -3.4691 29 1 1.1489 0.5386 2.5435 30 1 1.8309 -1.9684 3.6506 31 1 3.2846 -0.9412 3.6509 32 1 1.4041 -1.5650 6.6006 33 1 3.0889 -1.4919 5.9904 34 1 2.9518 2.1424 8.8343 35 1 3.0279 1.2307 10.2435 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261738703.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:36 Heat of formation + Delta-G solvation = -56.993450 kcal Electronic energy + Delta-G solvation = -19984.851880 eV Core-core repulsion = 16598.991862 eV Total energy + Delta-G solvation = -3385.860018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.03271 -39.58878 -38.82006 -34.95956 -34.31314 -33.77782 -33.14734 -31.65882 -30.70420 -26.55352 -24.95011 -24.81402 -22.63894 -21.83133 -20.40554 -19.36151 -18.31392 -17.69921 -17.40162 -16.74914 -16.36155 -15.85265 -15.50795 -15.35034 -14.67912 -14.45270 -14.04031 -13.73733 -13.46252 -13.15528 -12.83899 -12.65274 -12.21825 -12.00319 -11.81767 -11.49800 -11.42726 -11.01696 -11.00940 -10.50881 -10.40508 -10.15111 -10.04790 -9.79040 -8.86370 -8.79952 -8.66890 -8.16065 -6.44075 -4.01723 0.43440 2.19034 2.46244 2.78121 3.35239 3.42583 3.47736 3.54181 3.61163 3.81579 3.98964 4.20265 4.39934 4.49801 4.66892 4.88198 5.12180 5.22019 5.29086 5.52900 5.66520 5.97061 6.03703 6.19678 6.41216 6.41904 6.52090 6.70820 6.83388 6.91190 7.23897 7.46976 7.78503 8.22467 8.49279 9.05134 9.07219 9.67364 10.98114 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.045275 B = 0.003413 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.298201 B = 8201.723549 C = 8550.445604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.003 3.997 3 H 0.045 0.955 4 C -0.590 4.590 5 H 0.074 0.926 6 C 0.029 3.971 7 N -0.905 5.905 8 Si 1.044 2.956 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.283 1.283 12 C 0.529 3.471 13 O -0.536 6.536 14 N -0.746 5.746 15 C 0.128 3.872 16 C 0.032 3.968 17 H 0.103 0.897 18 C -0.127 4.127 19 C 0.042 3.958 20 C 0.599 3.401 21 N -0.833 5.833 22 O -0.517 6.517 23 N -0.241 5.241 24 O -0.169 6.169 25 H 0.026 0.974 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.269 0.731 29 H 0.399 0.601 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.412 0.588 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 6.421 24.824 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 H 0.063 0.937 4 C -0.628 4.628 5 H 0.092 0.908 6 C -0.176 4.176 7 N -0.539 5.539 8 Si 0.872 3.128 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.209 1.209 12 C 0.318 3.682 13 O -0.410 6.410 14 N -0.401 5.401 15 C 0.003 3.997 16 C -0.027 4.027 17 H 0.120 0.880 18 C -0.167 4.167 19 C -0.153 4.153 20 C 0.380 3.620 21 N -0.398 5.398 22 O -0.389 6.389 23 N 0.017 4.983 24 O -0.193 6.193 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.233 0.767 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.242 0.758 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.963 7.224 23.665 24.821 hybrid contribution 0.145 -1.232 1.313 1.806 sum -1.819 5.992 24.979 25.752 Atomic orbital electron populations 1.22184 0.96996 1.00472 1.00557 1.19192 0.93665 0.96949 0.92100 0.93694 1.21949 1.40369 1.10761 0.89717 0.90771 1.25766 0.94838 1.04956 0.92030 1.70833 1.41725 1.10028 1.31362 0.84068 0.76969 0.75470 0.76257 1.21029 1.20033 1.20931 1.21498 0.78603 0.84284 0.83852 1.90566 1.37333 1.26603 1.86530 1.46210 1.55871 1.32841 1.05226 1.21274 1.00234 0.95934 0.82302 1.24148 0.99476 0.83382 0.95679 0.87967 1.22820 1.05466 0.97862 0.90532 1.25841 0.99348 0.94274 0.95794 1.16851 0.76815 0.84636 0.83685 1.43679 1.73626 1.09943 1.12550 1.90917 1.49883 1.27956 1.70141 1.78306 1.06906 1.22133 0.90995 1.91361 1.79598 1.34636 1.13657 0.95470 0.91672 0.93381 0.92077 0.76686 0.89738 0.90755 0.86575 0.86661 0.75825 0.75465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.72 37.16 0.32 -2.64 16 2 C 0.00 0.07 2.22 -92.93 -0.21 -0.14 16 3 H 0.05 1.02 6.80 -51.93 -0.35 0.67 16 4 C -0.59 -17.13 8.63 -34.44 -0.30 -17.43 16 5 H 0.07 2.44 7.02 -52.48 -0.37 2.07 16 6 C 0.03 0.84 5.29 -17.82 -0.09 0.74 16 7 N -0.91 -28.20 13.70 55.43 0.76 -27.44 16 8 Si 1.04 24.59 26.29 -169.99 -4.47 20.12 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.27 -5.76 5.76 56.52 0.33 -5.44 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.53 11.67 7.15 -10.98 -0.08 11.59 16 13 O -0.54 -13.95 15.47 5.55 0.09 -13.87 16 14 N -0.75 -12.08 5.46 -60.29 -0.33 -12.41 16 15 C 0.13 1.68 5.36 -4.04 -0.02 1.66 16 16 C 0.03 0.32 3.84 -25.82 -0.10 0.22 16 17 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.13 -1.06 6.45 -26.48 -0.17 -1.23 16 19 C 0.04 0.38 7.29 -79.47 -0.58 -0.20 16 20 C 0.60 5.04 8.09 -12.45 -0.10 4.93 16 21 N -0.83 -3.95 8.87 30.46 0.27 -3.68 16 22 O -0.52 -5.93 17.79 5.32 0.09 -5.83 16 23 N -0.24 -2.48 12.15 35.28 0.43 -2.06 16 24 O -0.17 -2.06 12.23 -11.37 -0.14 -2.20 16 25 H 0.03 0.44 7.75 -51.93 -0.40 0.03 16 26 H 0.06 1.40 4.88 -51.93 -0.25 1.15 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.27 8.46 8.73 -40.82 -0.36 8.10 16 29 H 0.40 5.52 8.02 -40.82 -0.33 5.20 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.12 0.79 8.14 -51.92 -0.42 0.36 16 33 H 0.12 0.92 7.91 -51.93 -0.41 0.51 16 34 H 0.41 1.42 8.51 -40.82 -0.35 1.07 16 35 H 0.41 1.16 8.93 -40.82 -0.36 0.79 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -36.58 304.20 -4.21 -40.79 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.17 Total: 4.48 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.32 Total: -2.49 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 1.13 Total: -45.58 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.04 Total: -21.90 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -4.47 Total: 20.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.58 -4.21 -40.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261738703.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.203 kcal (2) G-P(sol) polarization free energy of solvation -36.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds