Wall clock time and date at job start Mon Mar 30 2020 00:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46990 * 2 1 4 4 C 1.50696 * 109.47154 * 239.99946 * 2 1 3 5 5 H 1.08003 * 120.00438 * 245.64173 * 4 2 1 6 6 C 1.37876 * 120.00229 * 65.64770 * 4 2 1 7 7 N 1.31512 * 120.00338 * 197.45388 * 6 4 2 8 8 Si 1.86799 * 119.99906 * 17.45114 * 6 4 2 9 9 H 1.48501 * 109.47295 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47388 * 300.00296 * 8 6 4 11 11 H 1.48505 * 109.47043 * 59.99935 * 8 6 4 12 12 C 1.50696 * 109.46960 * 120.00042 * 2 1 3 13 13 O 1.21286 * 120.00022 * 120.00459 * 12 2 1 14 14 N 1.34781 * 120.00215 * 299.99457 * 12 2 1 15 15 C 1.46497 * 120.00264 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.47268 * 180.02562 * 15 14 12 17 17 H 1.08992 * 110.86276 * 56.19748 * 16 15 14 18 18 C 1.54734 * 110.97371 * 180.02562 * 16 15 14 19 19 C 1.51693 * 102.54970 * 142.32417 * 18 16 15 20 20 C 1.47586 * 125.86458 * 164.57573 * 19 18 16 21 21 N 1.34774 * 119.99912 * 179.97438 * 20 19 18 22 22 O 1.21552 * 120.00407 * 359.97438 * 20 19 18 23 23 N 1.29016 * 108.27435 * 344.60644 * 19 18 16 24 24 O 1.41394 * 112.88735 * 359.68397 * 23 19 18 25 25 H 1.08998 * 109.47315 * 306.34698 * 1 2 3 26 26 H 1.09001 * 109.46632 * 66.34760 * 1 2 3 27 27 H 1.09003 * 109.46856 * 186.34632 * 1 2 3 28 28 H 0.97000 * 119.99661 * 354.94789 * 7 6 4 29 29 H 0.96998 * 119.99384 * 0.02562 * 14 12 2 30 30 H 1.09003 * 109.47424 * 300.00834 * 15 14 12 31 31 H 1.09002 * 109.46630 * 60.00835 * 15 14 12 32 32 H 1.09010 * 110.79096 * 260.58217 * 18 16 15 33 33 H 1.08993 * 110.80141 * 23.86151 * 18 16 15 34 34 H 0.97006 * 120.00522 * 359.97438 * 21 20 19 35 35 H 0.97007 * 120.00063 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5761 -1.6386 -1.1340 6 6 1.7980 -0.1754 -2.4794 7 7 1.9176 -0.9289 -3.5506 8 14 1.3104 1.6197 -2.6500 9 1 1.1168 1.9458 -4.0857 10 1 0.0440 1.8610 -1.9129 11 1 2.3823 2.4795 -2.0868 12 6 2.0323 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1946 -0.9408 3.6508 16 6 1.6843 -0.2198 4.9000 17 1 0.5968 -0.1476 4.8895 18 6 2.1808 -0.9220 6.1864 19 6 2.4626 0.2465 7.1118 20 6 2.6556 0.1653 8.5728 21 7 2.9014 1.2840 9.2832 22 8 2.5929 -0.9103 9.1354 23 7 2.5039 1.3234 6.4027 24 8 2.2875 1.0840 5.0261 25 1 -0.3634 0.6091 0.8277 26 1 -0.3633 0.4123 -0.9414 27 1 -0.3633 -1.0214 0.1136 28 1 2.2413 -1.8397 -3.4691 29 1 1.1489 0.5386 2.5435 30 1 1.8309 -1.9684 3.6506 31 1 3.2846 -0.9412 3.6509 32 1 1.4041 -1.5650 6.6006 33 1 3.0889 -1.4919 5.9904 34 1 2.9518 2.1424 8.8343 35 1 3.0279 1.2307 10.2435 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261738703.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:36 Heat of formation + Delta-G solvation = -90.217405 kcal Electronic energy + Delta-G solvation = -19986.292579 eV Core-core repulsion = 16598.991862 eV Total energy + Delta-G solvation = -3387.300716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.80416 -40.67444 -40.11788 -36.18336 -35.78667 -35.10411 -33.88376 -33.36694 -32.03280 -27.64539 -26.78299 -25.65984 -24.15583 -22.96880 -21.12163 -20.99736 -19.52107 -18.98519 -18.34410 -17.98001 -17.42436 -16.97528 -16.61914 -16.30831 -15.87577 -15.71733 -15.31475 -15.03498 -14.75505 -14.43552 -14.10307 -14.07835 -13.67285 -13.40491 -13.05225 -12.92780 -12.88655 -12.33685 -12.17851 -11.93232 -11.72797 -11.57464 -10.98481 -10.96722 -10.79841 -10.64920 -10.33136 -10.10715 -8.77274 -6.35882 -0.26570 1.44929 1.49515 1.60135 1.76020 1.80033 1.83183 2.08669 2.29318 2.54507 3.04521 3.09631 3.35858 3.36719 3.61582 3.84981 4.16339 4.22927 4.33205 4.48143 4.50961 4.67975 4.70574 4.74601 4.88024 5.17717 5.42629 5.54727 5.56246 5.78046 5.85870 6.06465 6.14104 6.61395 6.68012 6.96501 7.38998 7.47853 8.63743 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.045275 B = 0.003413 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.298201 B = 8201.723549 C = 8550.445604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.005 4.005 3 H 0.066 0.934 4 C -0.601 4.601 5 H 0.014 0.986 6 C -0.025 4.025 7 N -0.939 5.939 8 Si 1.088 2.912 9 H -0.292 1.292 10 H -0.223 1.223 11 H -0.263 1.263 12 C 0.526 3.474 13 O -0.589 6.589 14 N -0.721 5.721 15 C 0.126 3.874 16 C 0.042 3.958 17 H 0.127 0.873 18 C -0.128 4.128 19 C 0.054 3.946 20 C 0.600 3.400 21 N -0.810 5.810 22 O -0.550 6.550 23 N -0.248 5.248 24 O -0.196 6.196 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.247 0.753 29 H 0.415 0.585 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.421 0.579 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 9.140 27.481 29.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.084 0.916 4 C -0.639 4.639 5 H 0.032 0.968 6 C -0.221 4.221 7 N -0.575 5.575 8 Si 0.907 3.093 9 H -0.218 1.218 10 H -0.147 1.147 11 H -0.188 1.188 12 C 0.315 3.685 13 O -0.469 6.469 14 N -0.375 5.375 15 C 0.001 3.999 16 C -0.017 4.017 17 H 0.144 0.856 18 C -0.168 4.168 19 C -0.142 4.142 20 C 0.381 3.619 21 N -0.376 5.376 22 O -0.426 6.426 23 N 0.007 4.993 24 O -0.218 6.218 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.252 0.748 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.252 0.748 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.676 9.996 26.398 28.466 hybrid contribution 0.764 -2.141 0.611 2.354 sum -2.912 7.855 27.010 28.279 Atomic orbital electron populations 1.22054 0.94002 1.00972 1.02467 1.19188 0.95910 0.97106 0.90511 0.91606 1.22075 1.39793 1.09090 0.92958 0.96757 1.27525 0.94093 1.09177 0.91349 1.70994 1.44413 1.09341 1.32729 0.83603 0.79588 0.69428 0.76726 1.21838 1.14679 1.18774 1.21242 0.78246 0.83629 0.85380 1.90555 1.39895 1.28957 1.87460 1.45852 1.54566 1.32757 1.04375 1.21417 0.99551 0.96610 0.82329 1.24088 1.00424 0.82730 0.94413 0.85594 1.22879 1.06345 0.97878 0.89653 1.26011 0.97852 0.94195 0.96111 1.16817 0.76812 0.84880 0.83415 1.43576 1.71475 1.09398 1.13153 1.90914 1.51893 1.29263 1.70514 1.78338 1.08286 1.22429 0.90205 1.91336 1.80184 1.35312 1.14969 0.90029 0.92289 0.94569 0.94425 0.74766 0.89111 0.92182 0.84489 0.86392 0.74752 0.74089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 8.72 71.98 0.63 -4.57 16 2 C -0.01 -0.24 2.22 -12.29 -0.03 -0.27 16 3 H 0.07 2.77 6.80 -2.39 -0.02 2.76 16 4 C -0.60 -35.99 8.63 25.60 0.22 -35.77 16 5 H 0.01 0.99 7.02 -2.91 -0.02 0.97 16 6 C -0.02 -1.47 5.29 84.65 0.45 -1.02 16 7 N -0.94 -60.87 13.70 21.45 0.29 -60.58 16 8 Si 1.09 47.84 26.29 68.60 1.80 49.64 16 9 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 10 H -0.22 -8.04 5.76 99.48 0.57 -7.47 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 12 C 0.53 22.98 7.15 87.66 0.63 23.60 16 13 O -0.59 -31.76 15.47 -3.05 -0.05 -31.80 16 14 N -0.72 -21.72 5.46 -463.05 -2.53 -24.25 16 15 C 0.13 3.08 5.36 86.38 0.46 3.55 16 16 C 0.04 0.72 3.84 31.19 0.12 0.84 16 17 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 18 C -0.13 -1.81 6.45 30.76 0.20 -1.62 16 19 C 0.05 0.83 7.29 45.76 0.33 1.16 16 20 C 0.60 8.74 8.09 86.71 0.70 9.44 16 21 N -0.81 -5.63 8.87 -175.81 -1.56 -7.19 16 22 O -0.55 -11.67 17.79 -3.88 -0.07 -11.74 16 23 N -0.25 -4.51 12.15 -42.30 -0.51 -5.03 16 24 O -0.20 -4.28 12.23 -38.32 -0.47 -4.75 16 25 H 0.08 2.20 7.75 -2.39 -0.02 2.19 16 26 H 0.06 2.31 4.88 -2.39 -0.01 2.29 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.25 16.60 8.73 -92.71 -0.81 15.79 16 29 H 0.42 9.85 8.02 -92.71 -0.74 9.11 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.12 1.66 7.91 -2.39 -0.02 1.64 16 34 H 0.42 1.74 8.51 -92.70 -0.79 0.95 16 35 H 0.42 1.30 8.93 -92.70 -0.83 0.47 16 Total: -1.00 -85.13 304.20 -0.74 -85.87 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -1.37 Total: 14.48 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 3.71 Total: -4.66 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -4.31 Total: -97.04 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.58 Total: -48.29 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.80 Total: 49.64 kcal Total: -85.13 -0.74 -85.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261738703.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.351 kcal (2) G-P(sol) polarization free energy of solvation -85.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds