Wall clock time and date at job start Mon Mar 30 2020 00:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46630 * 2 1 4 4 C 1.50695 * 109.46916 * 239.99909 * 2 1 3 5 5 H 1.07998 * 120.00167 * 239.99768 * 4 2 1 6 6 C 1.37885 * 120.00172 * 60.00371 * 4 2 1 7 7 N 1.31514 * 120.00013 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00008 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47075 * 89.99656 * 8 6 4 10 10 H 1.48499 * 109.46772 * 209.99204 * 8 6 4 11 11 H 1.48500 * 109.46956 * 329.99607 * 8 6 4 12 12 C 1.50696 * 109.47154 * 119.99966 * 2 1 3 13 13 O 1.21284 * 120.00096 * 120.00107 * 12 2 1 14 14 N 1.34774 * 119.99838 * 300.00044 * 12 2 1 15 15 C 1.46506 * 120.00072 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47289 * 180.02562 * 15 14 12 17 17 H 1.09001 * 110.85673 * 302.64938 * 16 15 14 18 18 C 1.54739 * 110.97635 * 178.80579 * 16 15 14 19 19 C 1.51682 * 102.54883 * 217.67888 * 18 16 15 20 20 C 1.47597 * 125.86376 * 195.36386 * 19 18 16 21 21 N 1.34772 * 120.00061 * 179.97438 * 20 19 18 22 22 O 1.21551 * 119.99843 * 359.97438 * 20 19 18 23 23 N 1.29017 * 108.27478 * 15.38079 * 19 18 16 24 24 O 1.41385 * 112.89264 * 0.32284 * 23 19 18 25 25 H 1.09000 * 109.47188 * 300.00151 * 1 2 3 26 26 H 1.09002 * 109.47288 * 60.00237 * 1 2 3 27 27 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 28 28 H 0.96996 * 120.00180 * 179.97438 * 7 6 4 29 29 H 0.97001 * 120.00676 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47060 * 300.00359 * 15 14 12 31 31 H 1.09004 * 109.47073 * 59.99848 * 15 14 12 32 32 H 1.09008 * 110.78960 * 335.94167 * 18 16 15 33 33 H 1.08997 * 110.79720 * 99.41053 * 18 16 15 34 34 H 0.97002 * 120.00230 * 359.97438 * 21 20 19 35 35 H 0.97002 * 119.99752 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6035 8 14 2.3225 -1.1196 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6309 -1.7566 -3.7119 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4545 15 6 2.1956 -0.9402 3.6508 16 6 1.6850 -0.2194 4.9000 17 1 1.9960 0.8253 4.8996 18 6 2.1572 -0.9383 6.1863 19 6 0.9545 -0.8018 7.1005 20 6 0.9483 -1.0224 8.5599 21 7 -0.1928 -0.8670 9.2600 22 8 1.9723 -1.3443 9.1302 23 7 -0.0621 -0.4602 6.3834 24 8 0.2515 -0.3311 5.0108 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.7089 1.1613 -3.4844 29 1 1.1494 0.5390 2.5436 30 1 1.8327 -1.9680 3.6509 31 1 3.2856 -0.9397 3.6506 32 1 2.3737 -1.9877 5.9857 33 1 3.0262 -0.4374 6.6127 34 1 -1.0099 -0.6097 8.8049 35 1 -0.1967 -1.0116 10.2192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261738704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:38 Heat of formation + Delta-G solvation = -58.009857 kcal Electronic energy + Delta-G solvation = -19949.387507 eV Core-core repulsion = 16563.483414 eV Total energy + Delta-G solvation = -3385.904092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.96783 -39.52600 -38.66394 -34.87189 -34.23818 -33.71195 -33.07894 -31.45634 -30.18483 -26.40925 -25.10304 -24.87956 -22.62971 -21.84148 -20.35597 -19.36079 -18.25480 -17.63744 -16.86755 -16.27703 -16.17704 -15.68412 -15.46028 -15.12267 -14.61770 -14.50304 -14.13911 -13.77598 -13.34735 -12.93850 -12.84485 -12.28553 -12.16140 -11.96388 -11.45387 -11.34499 -11.00172 -10.96447 -10.70020 -10.64502 -10.36168 -10.23963 -9.98609 -9.93894 -8.95502 -8.64259 -8.52649 -8.31747 -6.01445 -4.04625 0.49393 2.25179 2.51342 2.84095 3.35128 3.40703 3.46802 3.59897 3.71271 3.89244 4.04721 4.28401 4.46501 4.51715 4.75491 4.94495 5.19222 5.27883 5.31844 5.62601 5.76268 6.08088 6.25249 6.46953 6.66642 6.76736 6.87050 6.93830 7.00435 7.49780 7.51544 7.78310 7.99499 8.15101 8.43404 9.04254 9.20938 9.60812 11.06171 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.056036 B = 0.003205 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.558430 B = 8732.991853 C = 9064.433903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.546 6.546 14 N -0.745 5.745 15 C 0.128 3.872 16 C 0.032 3.968 17 H 0.102 0.898 18 C -0.126 4.126 19 C 0.041 3.959 20 C 0.599 3.401 21 N -0.833 5.833 22 O -0.517 6.517 23 N -0.241 5.241 24 O -0.167 6.167 25 H 0.013 0.987 26 H 0.093 0.907 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.400 0.600 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.412 0.588 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 0.690 21.805 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.311 3.689 13 O -0.422 6.422 14 N -0.400 5.400 15 C 0.003 3.997 16 C -0.027 4.027 17 H 0.120 0.880 18 C -0.166 4.166 19 C -0.154 4.154 20 C 0.381 3.619 21 N -0.398 5.398 22 O -0.390 6.390 23 N 0.017 4.983 24 O -0.191 6.191 25 H 0.033 0.967 26 H 0.111 0.889 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.234 0.766 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.242 0.758 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.735 0.097 21.626 21.798 hybrid contribution 0.399 -0.068 -0.647 0.763 sum -2.336 0.029 20.978 21.108 Atomic orbital electron populations 1.21746 0.96418 0.99886 1.01013 1.18872 0.94230 0.96813 0.89172 0.92951 1.21151 1.30991 1.12803 0.89015 0.90791 1.24954 0.95135 0.95061 0.99114 1.69871 1.37130 1.23092 1.23527 0.86451 0.79450 0.79241 0.82064 1.20677 1.21308 1.19753 1.22021 0.78296 0.84245 0.84320 1.90534 1.38053 1.26871 1.86732 1.46217 1.55746 1.32906 1.05158 1.21261 0.99444 0.96580 0.82466 1.24159 0.81605 1.01234 0.95706 0.87992 1.22825 0.98060 1.04999 0.90747 1.25837 0.95536 0.98308 0.95748 1.16857 0.84099 0.77269 0.83720 1.43678 1.11726 1.71644 1.12767 1.90912 1.32219 1.46230 1.69618 1.78298 1.22503 1.06452 0.91070 1.91371 1.22243 1.91715 1.13755 0.96750 0.88858 0.95003 0.92968 0.76586 0.90923 0.89829 0.86719 0.86617 0.75818 0.75502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.87 37.16 0.33 -2.76 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.51 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.29 8.37 -34.44 -0.29 -14.58 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.28 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.52 11.80 7.15 -10.99 -0.08 11.72 16 13 O -0.55 -14.12 15.46 5.55 0.09 -14.04 16 14 N -0.75 -12.70 5.44 -60.29 -0.33 -13.03 16 15 C 0.13 1.75 5.37 -4.04 -0.02 1.73 16 16 C 0.03 0.34 3.84 -25.82 -0.10 0.24 16 17 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 18 C -0.13 -1.11 6.45 -26.48 -0.17 -1.28 16 19 C 0.04 0.38 7.29 -79.47 -0.58 -0.20 16 20 C 0.60 5.24 8.09 -12.44 -0.10 5.14 16 21 N -0.83 -4.23 8.87 30.47 0.27 -3.96 16 22 O -0.52 -6.08 17.79 5.32 0.09 -5.98 16 23 N -0.24 -2.62 12.15 35.28 0.43 -2.19 16 24 O -0.17 -2.16 12.22 -11.37 -0.14 -2.30 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.40 6.08 7.89 -40.82 -0.32 5.76 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.11 0.95 7.91 -51.92 -0.41 0.54 16 33 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.41 1.57 8.51 -40.82 -0.35 1.23 16 35 H 0.41 1.28 8.93 -40.82 -0.36 0.91 16 LS Contribution 308.27 15.07 4.65 4.65 Total: -1.00 -34.39 308.27 -4.86 -39.25 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.18 Total: 3.32 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.35 Total: 2.04 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 1.00 Total: -43.83 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.04 Total: -22.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.39 -4.86 -39.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261738704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.759 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds