Wall clock time and date at job start Mon Mar 30 2020 00:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46630 * 2 1 4 4 C 1.50695 * 109.46916 * 239.99909 * 2 1 3 5 5 H 1.07998 * 120.00167 * 239.99768 * 4 2 1 6 6 C 1.37885 * 120.00172 * 60.00371 * 4 2 1 7 7 N 1.31514 * 120.00013 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00008 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47075 * 89.99656 * 8 6 4 10 10 H 1.48499 * 109.46772 * 209.99204 * 8 6 4 11 11 H 1.48500 * 109.46956 * 329.99607 * 8 6 4 12 12 C 1.50696 * 109.47154 * 119.99966 * 2 1 3 13 13 O 1.21284 * 120.00096 * 120.00107 * 12 2 1 14 14 N 1.34774 * 119.99838 * 300.00044 * 12 2 1 15 15 C 1.46506 * 120.00072 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47289 * 180.02562 * 15 14 12 17 17 H 1.09001 * 110.85673 * 302.64938 * 16 15 14 18 18 C 1.54739 * 110.97635 * 178.80579 * 16 15 14 19 19 C 1.51682 * 102.54883 * 217.67888 * 18 16 15 20 20 C 1.47597 * 125.86376 * 195.36386 * 19 18 16 21 21 N 1.34772 * 120.00061 * 179.97438 * 20 19 18 22 22 O 1.21551 * 119.99843 * 359.97438 * 20 19 18 23 23 N 1.29017 * 108.27478 * 15.38079 * 19 18 16 24 24 O 1.41385 * 112.89264 * 0.32284 * 23 19 18 25 25 H 1.09000 * 109.47188 * 300.00151 * 1 2 3 26 26 H 1.09002 * 109.47288 * 60.00237 * 1 2 3 27 27 H 1.09001 * 109.46630 * 179.97438 * 1 2 3 28 28 H 0.96996 * 120.00180 * 179.97438 * 7 6 4 29 29 H 0.97001 * 120.00676 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47060 * 300.00359 * 15 14 12 31 31 H 1.09004 * 109.47073 * 59.99848 * 15 14 12 32 32 H 1.09008 * 110.78960 * 335.94167 * 18 16 15 33 33 H 1.08997 * 110.79720 * 99.41053 * 18 16 15 34 34 H 0.97002 * 120.00230 * 359.97438 * 21 20 19 35 35 H 0.97002 * 119.99752 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6035 8 14 2.3225 -1.1196 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6309 -1.7566 -3.7119 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4545 15 6 2.1956 -0.9402 3.6508 16 6 1.6850 -0.2194 4.9000 17 1 1.9960 0.8253 4.8996 18 6 2.1572 -0.9383 6.1863 19 6 0.9545 -0.8018 7.1005 20 6 0.9483 -1.0224 8.5599 21 7 -0.1928 -0.8670 9.2600 22 8 1.9723 -1.3443 9.1302 23 7 -0.0621 -0.4602 6.3834 24 8 0.2515 -0.3311 5.0108 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.7089 1.1613 -3.4844 29 1 1.1494 0.5390 2.5436 30 1 1.8327 -1.9680 3.6509 31 1 3.2856 -0.9397 3.6506 32 1 2.3737 -1.9877 5.9857 33 1 3.0262 -0.4374 6.6127 34 1 -1.0099 -0.6097 8.8049 35 1 -0.1967 -1.0116 10.2192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261738704.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:38 Heat of formation + Delta-G solvation = -86.988874 kcal Electronic energy + Delta-G solvation = -19950.644131 eV Core-core repulsion = 16563.483414 eV Total energy + Delta-G solvation = -3387.160717 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.77994 -40.57858 -40.07687 -36.11730 -35.73953 -35.07721 -33.86288 -32.92714 -31.77870 -27.58901 -27.14058 -25.63651 -24.24714 -22.95348 -21.14308 -20.97487 -18.97129 -18.49157 -18.24703 -17.97051 -17.20747 -16.93893 -16.67172 -16.30475 -16.10426 -15.82504 -15.30510 -14.86392 -14.60921 -14.51189 -14.12626 -13.78318 -13.39802 -13.10330 -12.96075 -12.87737 -12.64584 -12.57656 -12.21473 -12.14177 -12.00490 -11.71149 -11.03299 -10.95307 -10.78201 -10.61452 -10.32572 -10.03147 -8.14321 -6.24790 -0.24662 1.41560 1.42231 1.46536 1.54114 1.81585 1.91520 2.11897 2.31963 2.49659 3.07524 3.15339 3.38879 3.38917 3.64158 3.88100 4.23448 4.33683 4.38160 4.55644 4.71618 4.75402 4.79828 4.96543 5.03775 5.49614 5.50461 5.58032 5.75422 5.79954 5.94229 6.15200 6.21737 6.70503 6.85778 6.97619 7.40051 7.52028 8.91573 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.056036 B = 0.003205 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.558430 B = 8732.991853 C = 9064.433903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.024 3.976 3 H 0.044 0.956 4 C -0.530 4.530 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.585 6.585 14 N -0.725 5.725 15 C 0.126 3.874 16 C 0.040 3.960 17 H 0.122 0.878 18 C -0.126 4.126 19 C 0.053 3.947 20 C 0.601 3.399 21 N -0.810 5.810 22 O -0.550 6.550 23 N -0.250 5.250 24 O -0.198 6.198 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.020 0.980 28 H 0.265 0.735 29 H 0.411 0.589 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.421 0.579 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 1.102 23.172 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.003 3.997 3 H 0.062 0.938 4 C -0.568 4.568 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.200 1.200 11 H -0.203 1.203 12 C 0.312 3.688 13 O -0.465 6.465 14 N -0.379 5.379 15 C 0.002 3.998 16 C -0.019 4.019 17 H 0.140 0.860 18 C -0.165 4.165 19 C -0.142 4.142 20 C 0.381 3.619 21 N -0.376 5.376 22 O -0.425 6.425 23 N 0.006 4.994 24 O -0.219 6.219 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.247 0.753 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.252 0.748 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.108 0.554 23.028 23.243 hybrid contribution 0.453 -0.181 -0.959 1.076 sum -2.655 0.372 22.069 22.232 Atomic orbital electron populations 1.21561 0.95224 0.99315 1.01673 1.18805 0.95181 0.96085 0.89633 0.93840 1.21307 1.31607 1.12754 0.91140 0.93239 1.25609 0.95207 0.95741 1.01465 1.69949 1.37234 1.23592 1.24316 0.85590 0.78655 0.78512 0.79100 1.20078 1.19964 1.20258 1.21508 0.78122 0.83660 0.85461 1.90511 1.39971 1.28509 1.87503 1.45911 1.54548 1.32741 1.04675 1.21430 1.00095 0.96096 0.82196 1.24104 0.81009 1.02029 0.94722 0.86027 1.22879 0.98542 1.05448 0.89674 1.26042 0.95416 0.96658 0.96116 1.16804 0.84451 0.77229 0.83371 1.43573 1.10998 1.69652 1.13394 1.90910 1.33480 1.48165 1.69945 1.78330 1.22760 1.08125 0.90224 1.91345 1.23181 1.92175 1.15223 0.93113 0.91060 0.96040 0.92598 0.75266 0.92019 0.88839 0.86185 0.84447 0.74782 0.74081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.87 71.98 0.64 -4.91 16 2 C 0.02 1.21 2.64 -12.29 -0.03 1.18 16 3 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.53 -30.82 8.37 25.60 0.21 -30.61 16 5 H 0.05 3.07 6.75 -2.91 -0.02 3.05 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -51.42 11.32 21.45 0.24 -51.18 16 8 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 C 0.52 23.77 7.15 87.66 0.63 24.40 16 13 O -0.59 -30.80 15.46 -3.04 -0.05 -30.85 16 14 N -0.73 -23.96 5.44 -463.05 -2.52 -26.47 16 15 C 0.13 3.28 5.37 86.38 0.46 3.75 16 16 C 0.04 0.76 3.84 31.19 0.12 0.88 16 17 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 18 C -0.13 -1.92 6.45 30.75 0.20 -1.72 16 19 C 0.05 0.88 7.29 45.76 0.33 1.22 16 20 C 0.60 9.26 8.09 86.71 0.70 9.96 16 21 N -0.81 -6.34 8.87 -175.80 -1.56 -7.90 16 22 O -0.55 -11.97 17.79 -3.88 -0.07 -12.04 16 23 N -0.25 -4.96 12.15 -42.30 -0.51 -5.48 16 24 O -0.20 -4.76 12.22 -38.30 -0.47 -5.22 16 25 H 0.05 1.92 7.57 -2.39 -0.02 1.90 16 26 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.41 11.79 7.89 -92.71 -0.73 11.06 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.12 1.76 7.91 -2.38 -0.02 1.74 16 33 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.42 2.19 8.51 -92.71 -0.79 1.40 16 35 H 0.42 1.61 8.93 -92.71 -0.83 0.79 16 Total: -1.00 -74.52 308.27 -0.38 -74.90 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -1.19 Total: 11.47 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 3.71 Total: 5.66 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -4.35 Total: -91.03 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.58 Total: -48.11 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.52 -0.38 -74.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261738704.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.086 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds