Wall clock time and date at job start Mon Mar 30 2020 00:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.50699 * 109.47261 * 239.99767 * 2 1 3 5 5 H 1.07996 * 120.00063 * 239.99800 * 4 2 1 6 6 C 1.37881 * 119.99979 * 60.00290 * 4 2 1 7 7 N 1.31518 * 119.99584 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46923 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46954 * 119.99512 * 8 6 4 11 11 H 1.48493 * 109.47145 * 239.99533 * 8 6 4 12 12 N 1.46496 * 109.46916 * 119.99737 * 2 1 3 13 13 C 1.34777 * 120.00271 * 274.99861 * 12 2 1 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 2 16 16 N 1.46505 * 109.47064 * 180.02562 * 15 13 12 17 17 C 1.47316 * 126.68595 * 90.00168 * 16 15 13 18 18 C 1.51589 * 103.58899 * 179.97438 * 17 16 15 19 19 O 1.21223 * 127.15599 * 180.02562 * 18 17 16 20 20 N 1.34772 * 105.68231 * 0.02562 * 18 17 16 21 21 C 1.46505 * 124.17302 * 180.02562 * 20 18 17 22 22 C 1.33794 * 111.64524 * 359.76417 * 20 18 17 23 23 O 1.21535 * 123.76667 * 180.24612 * 22 20 18 24 24 H 1.09000 * 109.46953 * 60.00208 * 1 2 3 25 25 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47341 * 299.99907 * 1 2 3 27 27 H 0.97007 * 119.99216 * 180.02562 * 7 6 4 28 28 H 0.97005 * 120.00266 * 95.00444 * 12 2 1 29 29 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 30 30 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 31 31 H 1.08999 * 110.59614 * 298.48613 * 17 16 15 32 32 H 1.08994 * 110.59776 * 61.43813 * 17 16 15 33 33 H 1.08999 * 109.46737 * 359.97106 * 21 20 18 34 34 H 1.08992 * 109.46891 * 119.97399 * 21 20 18 35 35 H 1.09001 * 109.46455 * 239.97696 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1485 -2.2857 -3.6037 10 1 1.1679 -1.5867 -4.8164 11 1 3.1473 -0.1858 -4.8160 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6499 -0.7284 3.5875 16 7 2.6985 0.2128 4.7091 17 6 1.6183 0.4921 5.6712 18 6 2.2232 1.5315 6.5940 19 8 1.6936 2.0615 7.5469 20 7 3.4724 1.7437 6.1346 21 6 4.4222 2.6826 6.7369 22 6 3.7397 0.9870 5.0641 23 8 4.8035 0.9997 4.4765 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7083 1.1608 -3.4845 28 1 2.2491 -1.6317 1.1527 29 1 3.6492 -1.1202 3.3980 30 1 1.9777 -1.5508 3.8325 31 1 0.7444 0.8956 5.1599 32 1 1.3572 -0.4086 6.2266 33 1 3.9587 3.1672 7.5961 34 1 5.3115 2.1420 7.0606 35 1 4.7029 3.4369 6.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261840838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:33 Heat of formation + Delta-G solvation = -69.160543 kcal Electronic energy + Delta-G solvation = -20637.453903 eV Core-core repulsion = 17251.066280 eV Total energy + Delta-G solvation = -3386.387622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.33923 -39.11258 -38.48785 -36.15986 -35.34916 -34.67275 -32.47166 -30.60419 -28.82621 -27.24196 -26.35289 -25.28391 -22.72903 -21.45401 -20.30204 -19.53030 -17.81702 -17.55687 -16.89182 -16.70339 -15.81879 -15.68443 -15.40854 -14.84718 -14.47052 -14.28707 -14.22879 -13.98920 -13.67547 -13.00876 -12.80145 -12.76207 -12.47783 -12.17915 -11.66603 -11.13178 -11.00635 -10.95437 -10.78859 -10.35112 -10.32432 -10.27772 -9.91309 -9.74553 -9.09157 -8.73114 -8.58182 -8.00170 -6.15568 -4.25034 1.52627 1.94854 2.80631 2.97072 3.21405 3.22896 3.30362 3.32841 3.92567 4.02956 4.34966 4.56847 4.87126 5.00311 5.13134 5.16119 5.17315 5.25602 5.35710 5.39946 5.46307 5.75969 6.25717 6.76317 6.88859 7.02123 7.09047 7.21757 7.37411 7.49155 7.64662 7.86130 8.03064 8.10415 8.56591 8.72991 9.01553 9.42519 10.90458 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038254 B = 0.003975 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.777385 B = 7043.015228 C = 7283.594957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.705 5.705 13 C 0.480 3.520 14 O -0.545 6.545 15 C 0.130 3.870 16 N -0.605 5.605 17 C 0.065 3.935 18 C 0.527 3.473 19 O -0.479 6.479 20 N -0.579 5.579 21 C 0.090 3.910 22 C 0.705 3.295 23 O -0.537 6.537 24 H 0.090 0.910 25 H 0.027 0.973 26 H 0.013 0.987 27 H 0.264 0.736 28 H 0.390 0.610 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 -4.025 16.623 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.354 5.354 13 C 0.263 3.737 14 O -0.423 6.423 15 C 0.005 3.995 16 N -0.343 5.343 17 C -0.061 4.061 18 C 0.315 3.685 19 O -0.350 6.350 20 N -0.326 5.326 21 C -0.051 4.051 22 C 0.407 3.593 23 O -0.410 6.410 24 H 0.109 0.891 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.222 0.778 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.376 -2.781 16.614 17.012 hybrid contribution 0.336 -0.815 -1.009 1.340 sum 2.713 -3.597 15.605 16.242 Atomic orbital electron populations 1.22068 0.98358 0.99101 1.00895 1.18770 0.91029 0.94036 0.79913 0.93408 1.21247 1.32463 1.13275 0.90258 0.91920 1.24898 0.94778 0.94938 0.99126 1.69916 1.35872 1.22469 1.23829 0.86378 0.78598 0.79530 0.82504 1.19687 1.20871 1.20866 1.46504 1.64873 1.13618 1.10367 1.20860 0.79458 0.88148 0.85274 1.90678 1.50828 1.15851 1.84989 1.21281 1.04969 0.89905 0.83350 1.46951 1.13378 1.43771 1.30205 1.22515 0.93414 0.99533 0.90623 1.20869 0.81288 0.82321 0.84010 1.90795 1.65826 1.51735 1.26596 1.46227 1.16359 1.40274 1.29699 1.21798 0.91975 0.92155 0.99195 1.15746 0.84593 0.79001 0.79989 1.90988 1.24856 1.68798 1.56360 0.89132 0.95401 0.96760 0.92600 0.77759 0.86588 0.86817 0.85546 0.85903 0.88926 0.90458 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.55 2.56 -69.08 -0.18 6.37 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.70 -13.66 5.07 -54.93 -0.28 -13.94 16 13 C 0.48 8.83 7.86 -10.98 -0.09 8.75 16 14 O -0.55 -12.56 16.09 5.56 0.09 -12.47 16 15 C 0.13 1.60 6.63 -5.19 -0.03 1.57 16 16 N -0.61 -7.87 2.51 -181.39 -0.45 -8.33 16 17 C 0.07 0.65 7.66 -4.31 -0.03 0.61 16 18 C 0.53 6.30 8.32 -10.55 -0.09 6.21 16 19 O -0.48 -6.58 17.51 5.61 0.10 -6.48 16 20 N -0.58 -7.35 3.01 -128.17 -0.39 -7.73 16 21 C 0.09 0.88 10.76 59.85 0.64 1.52 16 22 C 0.70 10.68 8.31 -88.03 -0.73 9.95 16 23 O -0.54 -9.97 17.34 5.33 0.09 -9.87 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.39 6.23 8.54 -40.82 -0.35 5.88 16 29 H 0.12 1.33 8.03 -51.93 -0.42 0.91 16 30 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.77 7.64 -51.93 -0.40 0.37 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 309.99 15.07 4.67 4.67 Total: -1.00 -35.24 309.99 -5.49 -40.72 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.37 Total: 2.79 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: -0.56 Total: 19.31 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.49 Total: -54.06 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: 0.28 Total: -28.82 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.24 -5.49 -40.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261840838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.436 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds