Wall clock time and date at job start Mon Mar 30 2020 00:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.50699 * 109.47261 * 239.99767 * 2 1 3 5 5 H 1.07996 * 120.00063 * 239.99800 * 4 2 1 6 6 C 1.37881 * 119.99979 * 60.00290 * 4 2 1 7 7 N 1.31518 * 119.99584 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00089 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46923 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46954 * 119.99512 * 8 6 4 11 11 H 1.48493 * 109.47145 * 239.99533 * 8 6 4 12 12 N 1.46496 * 109.46916 * 119.99737 * 2 1 3 13 13 C 1.34777 * 120.00271 * 274.99861 * 12 2 1 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 2 16 16 N 1.46505 * 109.47064 * 180.02562 * 15 13 12 17 17 C 1.47316 * 126.68595 * 90.00168 * 16 15 13 18 18 C 1.51589 * 103.58899 * 179.97438 * 17 16 15 19 19 O 1.21223 * 127.15599 * 180.02562 * 18 17 16 20 20 N 1.34772 * 105.68231 * 0.02562 * 18 17 16 21 21 C 1.46505 * 124.17302 * 180.02562 * 20 18 17 22 22 C 1.33794 * 111.64524 * 359.76417 * 20 18 17 23 23 O 1.21535 * 123.76667 * 180.24612 * 22 20 18 24 24 H 1.09000 * 109.46953 * 60.00208 * 1 2 3 25 25 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47341 * 299.99907 * 1 2 3 27 27 H 0.97007 * 119.99216 * 180.02562 * 7 6 4 28 28 H 0.97005 * 120.00266 * 95.00444 * 12 2 1 29 29 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 30 30 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 31 31 H 1.08999 * 110.59614 * 298.48613 * 17 16 15 32 32 H 1.08994 * 110.59776 * 61.43813 * 17 16 15 33 33 H 1.08999 * 109.46737 * 359.97106 * 21 20 18 34 34 H 1.08992 * 109.46891 * 119.97399 * 21 20 18 35 35 H 1.09001 * 109.46455 * 239.97696 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1485 -2.2857 -3.6037 10 1 1.1679 -1.5867 -4.8164 11 1 3.1473 -0.1858 -4.8160 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6499 -0.7284 3.5875 16 7 2.6985 0.2128 4.7091 17 6 1.6183 0.4921 5.6712 18 6 2.2232 1.5315 6.5940 19 8 1.6936 2.0615 7.5469 20 7 3.4724 1.7437 6.1346 21 6 4.4222 2.6826 6.7369 22 6 3.7397 0.9870 5.0641 23 8 4.8035 0.9997 4.4765 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7083 1.1608 -3.4845 28 1 2.2491 -1.6317 1.1527 29 1 3.6492 -1.1202 3.3980 30 1 1.9777 -1.5508 3.8325 31 1 0.7444 0.8956 5.1599 32 1 1.3572 -0.4086 6.2266 33 1 3.9587 3.1672 7.5961 34 1 5.3115 2.1420 7.0606 35 1 4.7029 3.4369 6.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261840838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:33 Heat of formation + Delta-G solvation = -96.090735 kcal Electronic energy + Delta-G solvation = -20638.621684 eV Core-core repulsion = 17251.066280 eV Total energy + Delta-G solvation = -3387.555403 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.34950 -40.54754 -39.66302 -37.32942 -36.77363 -36.06629 -34.32852 -31.88452 -30.36775 -28.13841 -27.49238 -27.26611 -23.87758 -22.96381 -21.56912 -21.04206 -19.22242 -18.57348 -18.21994 -17.74667 -17.37512 -17.11119 -16.76931 -16.24996 -15.89905 -15.51247 -15.30265 -15.07512 -14.92583 -14.47725 -14.28638 -13.78573 -13.67146 -13.52393 -13.19292 -12.98177 -12.80662 -12.68500 -12.25963 -12.11548 -12.06508 -11.40070 -11.13776 -11.07911 -10.92185 -10.61006 -9.94712 -9.73962 -8.17083 -6.34338 0.54375 0.98108 1.44886 1.46638 1.58137 1.78597 1.86116 1.93413 2.38504 2.71725 3.02145 3.13991 3.70217 3.96161 4.20292 4.26585 4.36187 4.39354 4.39675 4.49710 4.68746 4.77194 4.85029 4.94436 5.11440 5.24007 5.46071 5.62293 5.71335 5.92798 6.00036 6.12101 6.27572 6.74784 6.89376 7.00557 7.33913 7.57477 8.89203 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038254 B = 0.003975 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.777385 B = 7043.015228 C = 7283.594957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.270 3.730 3 H -0.010 1.010 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.971 3.029 9 H -0.257 1.257 10 H -0.278 1.278 11 H -0.288 1.288 12 N -0.700 5.700 13 C 0.474 3.526 14 O -0.598 6.598 15 C 0.142 3.858 16 N -0.605 5.605 17 C 0.069 3.931 18 C 0.528 3.472 19 O -0.498 6.498 20 N -0.583 5.583 21 C 0.083 3.917 22 C 0.697 3.303 23 O -0.581 6.581 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.014 0.986 27 H 0.264 0.736 28 H 0.410 0.590 29 H 0.130 0.870 30 H 0.174 0.826 31 H 0.128 0.872 32 H 0.175 0.825 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 -6.603 17.590 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.166 3.834 3 H 0.008 0.992 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.796 3.204 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.214 1.214 12 N -0.350 5.350 13 C 0.260 3.740 14 O -0.480 6.480 15 C 0.018 3.982 16 N -0.342 5.342 17 C -0.055 4.055 18 C 0.317 3.683 19 O -0.371 6.371 20 N -0.328 5.328 21 C -0.057 4.057 22 C 0.399 3.601 23 O -0.457 6.457 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.246 0.754 29 H 0.148 0.852 30 H 0.192 0.808 31 H 0.145 0.855 32 H 0.192 0.808 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.367 -5.407 17.627 18.589 hybrid contribution 0.332 0.059 -1.260 1.305 sum 2.698 -5.347 16.367 17.428 Atomic orbital electron populations 1.21856 0.97906 0.99701 0.99470 1.18316 0.91348 0.91617 0.82137 0.99180 1.21617 1.32361 1.13539 0.90766 0.90543 1.25811 0.94924 0.95577 1.02423 1.70074 1.37188 1.24071 1.24456 0.85303 0.78083 0.78538 0.78445 1.18106 1.20374 1.21401 1.46201 1.64955 1.14467 1.09407 1.22006 0.77911 0.87666 0.86464 1.90661 1.52921 1.18473 1.85941 1.21435 1.06805 0.89914 0.80089 1.47137 1.13540 1.43175 1.30316 1.22791 0.91951 1.00972 0.89785 1.21178 0.80881 0.82326 0.83882 1.90791 1.66056 1.52588 1.27627 1.46365 1.17156 1.40100 1.29201 1.21991 0.92385 0.91964 0.99364 1.16037 0.84612 0.79252 0.80225 1.90949 1.26711 1.70215 1.57855 0.91996 0.93546 0.96717 0.92674 0.75420 0.85173 0.80839 0.85461 0.80828 0.87455 0.89127 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 9.26 71.98 0.67 -5.66 16 2 C 0.27 13.55 2.56 44.25 0.11 13.66 16 3 H -0.01 -0.60 7.58 -2.38 -0.02 -0.61 16 4 C -0.54 -28.10 8.73 25.60 0.22 -27.88 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -52.55 11.32 21.45 0.24 -52.31 16 8 Si 0.97 41.50 29.54 68.60 2.03 43.53 16 9 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 N -0.70 -26.31 5.07 -446.10 -2.26 -28.57 16 13 C 0.47 16.86 7.86 87.66 0.69 17.55 16 14 O -0.60 -27.92 16.09 -3.02 -0.05 -27.97 16 15 C 0.14 3.01 6.63 85.63 0.57 3.57 16 16 N -0.61 -14.19 2.51 -846.22 -2.12 -16.31 16 17 C 0.07 1.16 7.66 85.76 0.66 1.82 16 18 C 0.53 11.67 8.32 87.94 0.73 12.41 16 19 O -0.50 -12.94 17.51 -2.85 -0.05 -12.99 16 20 N -0.58 -14.20 3.01 -796.66 -2.39 -16.60 16 21 C 0.08 1.59 10.76 127.77 1.37 2.96 16 22 C 0.70 20.40 8.31 179.44 1.49 21.89 16 23 O -0.58 -21.52 17.34 -3.83 -0.07 -21.59 16 24 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 25 H 0.05 2.01 8.14 -2.38 -0.02 2.00 16 26 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 28 H 0.41 12.03 8.54 -92.70 -0.79 11.24 16 29 H 0.13 2.52 8.03 -2.39 -0.02 2.50 16 30 H 0.17 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.17 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.69 7.64 -2.39 -0.02 1.67 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -80.34 309.99 2.62 -77.71 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.33 Total: 13.65 kcal Atomic # 6 Polarization: 34.47 SS G_CDS: 6.96 Total: 41.43 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -6.53 Total: -113.78 kcal Atomic # 8 Polarization: -62.38 SS G_CDS: -0.16 Total: -62.54 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -80.34 2.62 -77.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261840838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.378 kcal (2) G-P(sol) polarization free energy of solvation -80.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds