Wall clock time and date at job start Mon Mar 30 2020 00:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 N 1.46501 * 109.46866 * 180.02562 * 15 13 12 17 17 C 1.47312 * 126.68792 * 89.99912 * 16 15 13 18 18 C 1.51583 * 103.59151 * 179.97438 * 17 16 15 19 19 O 1.21235 * 127.16018 * 180.02562 * 18 17 16 20 20 N 1.34771 * 105.68593 * 0.02562 * 18 17 16 21 21 C 1.46496 * 124.17821 * 180.02562 * 20 18 17 22 22 C 1.33796 * 111.64076 * 359.76491 * 20 18 17 23 23 O 1.21534 * 123.76678 * 180.25248 * 22 20 18 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 29 29 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 30 30 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 31 31 H 1.09002 * 110.60057 * 298.48521 * 17 16 15 32 32 H 1.08997 * 110.60006 * 61.43967 * 17 16 15 33 33 H 1.09005 * 109.47212 * 359.97438 * 21 20 18 34 34 H 1.09005 * 109.46801 * 119.97023 * 21 20 18 35 35 H 1.08993 * 109.47462 * 239.97697 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 7 2.6987 0.2131 -4.7090 17 6 3.8384 1.0632 -5.0943 18 6 3.3276 1.8157 -6.3070 19 8 3.9287 2.6366 -6.9662 20 7 2.0661 1.3824 -6.4999 21 6 1.1903 1.8518 -7.5764 22 6 1.7144 0.4665 -5.5902 23 8 0.6264 -0.0743 -5.5618 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 2.2490 -1.6317 -1.1527 29 1 3.6480 -1.1211 -3.3986 30 1 1.9760 -1.5503 -3.8327 31 1 4.0890 1.7559 -4.2909 32 1 4.7013 0.4516 -5.3579 33 1 1.7185 2.5915 -8.1780 34 1 0.9043 1.0089 -8.2056 35 1 0.2966 2.3041 -7.1466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261840839.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:35 Heat of formation + Delta-G solvation = -69.272142 kcal Electronic energy + Delta-G solvation = -20641.401442 eV Core-core repulsion = 17255.008980 eV Total energy + Delta-G solvation = -3386.392462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.34113 -39.11103 -38.48718 -36.16287 -35.34945 -34.67035 -32.47504 -30.60297 -28.81823 -27.24049 -26.34800 -25.27369 -22.72622 -21.46717 -20.27749 -19.53602 -17.81963 -17.56008 -16.88467 -16.70425 -15.84800 -15.68069 -15.41729 -14.80666 -14.47251 -14.28937 -14.19229 -13.98994 -13.74848 -13.00340 -12.79698 -12.76621 -12.44685 -12.16744 -11.65680 -11.13601 -11.00220 -10.96358 -10.76253 -10.37215 -10.32870 -10.26240 -9.91801 -9.74267 -9.10010 -8.72943 -8.58068 -7.99859 -6.15566 -4.25673 1.52643 1.94722 2.80607 2.96499 3.21786 3.23422 3.28866 3.29640 3.92841 4.02831 4.34179 4.56991 4.88004 5.00439 5.14320 5.15667 5.16601 5.25204 5.35776 5.39522 5.45769 5.75553 6.25570 6.80046 6.94924 7.01789 7.12018 7.21798 7.38375 7.50148 7.64387 7.86511 8.02432 8.11192 8.56662 8.72047 9.01456 9.41786 10.90263 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039831 B = 0.003923 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.802769 B = 7135.298011 C = 7312.177591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.705 5.705 13 C 0.480 3.520 14 O -0.545 6.545 15 C 0.130 3.870 16 N -0.605 5.605 17 C 0.065 3.935 18 C 0.527 3.473 19 O -0.478 6.478 20 N -0.580 5.580 21 C 0.090 3.910 22 C 0.705 3.295 23 O -0.538 6.538 24 H 0.014 0.986 25 H 0.027 0.973 26 H 0.090 0.910 27 H 0.265 0.735 28 H 0.390 0.610 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 -3.189 -15.783 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.354 5.354 13 C 0.263 3.737 14 O -0.423 6.423 15 C 0.005 3.995 16 N -0.343 5.343 17 C -0.061 4.061 18 C 0.315 3.685 19 O -0.349 6.349 20 N -0.326 5.326 21 C -0.051 4.051 22 C 0.407 3.593 23 O -0.411 6.411 24 H 0.033 0.967 25 H 0.046 0.954 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.820 -2.112 -15.945 16.791 hybrid contribution 0.333 -0.844 0.999 1.349 sum 5.153 -2.957 -14.947 16.084 Atomic orbital electron populations 1.22076 0.98388 0.99207 1.00917 1.18752 0.91089 0.93916 0.79820 0.93410 1.21167 1.32693 1.13307 0.90279 0.92040 1.24897 0.94765 0.94932 0.99093 1.69897 1.35671 1.22380 1.24058 0.86493 0.79122 0.79600 0.81778 1.21133 1.20128 1.20170 1.46510 1.64886 1.13591 1.10389 1.20860 0.79615 0.88164 0.85105 1.90679 1.50780 1.16059 1.84832 1.21282 1.04492 0.90457 0.83276 1.46952 1.14045 1.43831 1.29446 1.22521 0.91431 0.95373 0.96778 1.20877 0.81186 0.81256 0.85173 1.90799 1.61943 1.31070 1.51117 1.46225 1.16281 1.39787 1.30275 1.21795 0.94132 1.00933 0.88259 1.15744 0.84361 0.79725 0.79469 1.90980 1.21102 1.54297 1.74761 0.96663 0.95386 0.89166 0.92467 0.77761 0.86757 0.86647 0.85483 0.85868 0.88922 0.90468 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 2 C 0.27 6.59 2.56 -69.09 -0.18 6.42 16 3 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 4 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.71 -13.67 5.07 -54.93 -0.28 -13.95 16 13 C 0.48 8.83 7.86 -10.98 -0.09 8.75 16 14 O -0.55 -12.56 16.09 5.56 0.09 -12.47 16 15 C 0.13 1.60 6.63 -5.19 -0.03 1.57 16 16 N -0.61 -7.87 2.51 -181.39 -0.45 -8.32 16 17 C 0.06 0.65 7.66 -4.32 -0.03 0.62 16 18 C 0.53 6.31 8.32 -10.55 -0.09 6.23 16 19 O -0.48 -6.60 17.51 5.60 0.10 -6.50 16 20 N -0.58 -7.32 3.00 -128.17 -0.39 -7.71 16 21 C 0.09 0.87 10.76 59.84 0.64 1.51 16 22 C 0.70 10.61 8.31 -88.02 -0.73 9.88 16 23 O -0.54 -9.86 17.34 5.34 0.09 -9.77 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.39 6.23 8.54 -40.82 -0.35 5.88 16 29 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.12 1.30 8.03 -51.93 -0.42 0.88 16 31 H 0.13 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.76 7.64 -51.93 -0.40 0.37 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 309.99 15.07 4.67 4.67 Total: -1.00 -35.02 309.99 -5.49 -40.50 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.37 Total: 3.13 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: -0.56 Total: 19.22 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.49 Total: -53.95 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: 0.28 Total: -28.74 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.02 -5.49 -40.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261840839.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.768 kcal (2) G-P(sol) polarization free energy of solvation -35.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds