Wall clock time and date at job start Mon Mar 30 2020 00:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 N 1.46501 * 109.46866 * 180.02562 * 15 13 12 17 17 C 1.47312 * 126.68792 * 89.99912 * 16 15 13 18 18 C 1.51583 * 103.59151 * 179.97438 * 17 16 15 19 19 O 1.21235 * 127.16018 * 180.02562 * 18 17 16 20 20 N 1.34771 * 105.68593 * 0.02562 * 18 17 16 21 21 C 1.46496 * 124.17821 * 180.02562 * 20 18 17 22 22 C 1.33796 * 111.64076 * 359.76491 * 20 18 17 23 23 O 1.21534 * 123.76678 * 180.25248 * 22 20 18 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 29 29 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 30 30 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 31 31 H 1.09002 * 110.60057 * 298.48521 * 17 16 15 32 32 H 1.08997 * 110.60006 * 61.43967 * 17 16 15 33 33 H 1.09005 * 109.47212 * 359.97438 * 21 20 18 34 34 H 1.09005 * 109.46801 * 119.97023 * 21 20 18 35 35 H 1.08993 * 109.47462 * 239.97697 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 7 2.6987 0.2131 -4.7090 17 6 3.8384 1.0632 -5.0943 18 6 3.3276 1.8157 -6.3070 19 8 3.9287 2.6366 -6.9662 20 7 2.0661 1.3824 -6.4999 21 6 1.1903 1.8518 -7.5764 22 6 1.7144 0.4665 -5.5902 23 8 0.6264 -0.0743 -5.5618 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 2.2490 -1.6317 -1.1527 29 1 3.6480 -1.1211 -3.3986 30 1 1.9760 -1.5503 -3.8327 31 1 4.0890 1.7559 -4.2909 32 1 4.7013 0.4516 -5.3579 33 1 1.7185 2.5915 -8.1780 34 1 0.9043 1.0089 -8.2056 35 1 0.2966 2.3041 -7.1466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261840839.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:34 Heat of formation + Delta-G solvation = -95.901306 kcal Electronic energy + Delta-G solvation = -20642.556169 eV Core-core repulsion = 17255.008980 eV Total energy + Delta-G solvation = -3387.547189 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.35039 -40.54938 -39.66197 -37.32804 -36.77498 -36.06768 -34.32273 -31.88814 -30.38023 -28.13684 -27.49970 -27.26428 -23.87607 -22.98565 -21.54682 -21.05506 -19.22109 -18.57572 -18.21271 -17.73425 -17.37824 -17.13708 -16.75924 -16.25924 -15.80065 -15.55643 -15.29662 -15.05096 -15.01644 -14.47833 -14.27318 -13.76853 -13.67581 -13.52416 -13.20674 -12.96545 -12.79319 -12.70420 -12.26134 -12.14509 -12.06838 -11.40123 -11.13719 -11.10652 -10.92102 -10.58136 -9.95275 -9.74408 -8.15470 -6.33306 0.54139 0.98152 1.47931 1.49710 1.57462 1.78755 1.85673 1.93027 2.39489 2.71996 3.02091 3.15403 3.70069 3.95936 4.20475 4.26176 4.36178 4.39182 4.39847 4.49729 4.68862 4.73894 4.83689 4.91182 5.10478 5.23605 5.44109 5.62394 5.69008 5.91117 5.99879 6.10319 6.27278 6.75296 6.89310 7.00506 7.34822 7.57523 8.90624 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039831 B = 0.003923 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.802769 B = 7135.298011 C = 7312.177591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H -0.002 1.002 4 C -0.544 4.544 5 H 0.080 0.920 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.973 3.027 9 H -0.291 1.291 10 H -0.264 1.264 11 H -0.267 1.267 12 N -0.700 5.700 13 C 0.474 3.526 14 O -0.598 6.598 15 C 0.142 3.858 16 N -0.606 5.606 17 C 0.069 3.931 18 C 0.528 3.472 19 O -0.498 6.498 20 N -0.583 5.583 21 C 0.083 3.917 22 C 0.697 3.303 23 O -0.580 6.580 24 H 0.004 0.996 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.264 0.736 28 H 0.410 0.590 29 H 0.172 0.828 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.174 0.826 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 -5.333 -16.208 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.016 0.984 4 C -0.582 4.582 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.798 3.202 9 H -0.217 1.217 10 H -0.189 1.189 11 H -0.192 1.192 12 N -0.350 5.350 13 C 0.260 3.740 14 O -0.480 6.480 15 C 0.018 3.982 16 N -0.342 5.342 17 C -0.056 4.056 18 C 0.317 3.683 19 O -0.371 6.371 20 N -0.328 5.328 21 C -0.057 4.057 22 C 0.399 3.601 23 O -0.456 6.456 24 H 0.023 0.977 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.246 0.754 29 H 0.190 0.810 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.191 0.809 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.833 -4.292 -16.406 18.283 hybrid contribution -0.296 -0.108 1.079 1.124 sum 6.536 -4.400 -15.327 17.234 Atomic orbital electron populations 1.21911 0.98946 0.99349 0.99109 1.18288 0.90624 0.92030 0.82224 0.98405 1.21542 1.32528 1.13634 0.90530 0.90195 1.25836 0.94879 0.95546 1.02495 1.70064 1.37136 1.24116 1.24595 0.85379 0.78777 0.78631 0.77430 1.21669 1.18851 1.19234 1.46201 1.64934 1.14447 1.09460 1.22012 0.78091 0.87684 0.86263 1.90661 1.52819 1.18748 1.85766 1.21433 1.07687 0.89432 0.79687 1.47136 1.14358 1.43912 1.28767 1.22786 0.91680 0.95546 0.95561 1.21168 0.80764 0.80849 0.85471 1.90795 1.62247 1.31957 1.52080 1.46362 1.16920 1.39192 1.30334 1.21993 0.93895 1.01863 0.87952 1.16023 0.84183 0.79755 0.80100 1.90944 1.22798 1.55885 1.76002 0.97703 0.94046 0.91702 0.92680 0.75400 0.81036 0.84960 0.85564 0.80872 0.87500 0.89094 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 13.67 2.56 44.24 0.11 13.78 16 3 H 0.00 -0.12 7.58 -2.39 -0.02 -0.14 16 4 C -0.54 -27.58 8.73 25.60 0.22 -27.36 16 5 H 0.08 3.67 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -52.42 11.32 21.45 0.24 -52.18 16 8 Si 0.97 40.75 29.54 68.60 2.03 42.77 16 9 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 12 N -0.70 -26.31 5.07 -446.10 -2.26 -28.57 16 13 C 0.47 16.88 7.86 87.66 0.69 17.57 16 14 O -0.60 -27.96 16.09 -3.02 -0.05 -28.00 16 15 C 0.14 3.01 6.63 85.64 0.57 3.58 16 16 N -0.61 -14.21 2.51 -846.23 -2.12 -16.33 16 17 C 0.07 1.17 7.66 85.76 0.66 1.83 16 18 C 0.53 11.76 8.32 87.94 0.73 12.49 16 19 O -0.50 -13.05 17.51 -2.89 -0.05 -13.10 16 20 N -0.58 -14.13 3.00 -796.65 -2.39 -16.52 16 21 C 0.08 1.57 10.76 127.77 1.37 2.94 16 22 C 0.70 20.22 8.31 179.44 1.49 21.71 16 23 O -0.58 -21.10 17.34 -3.82 -0.07 -21.16 16 24 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 25 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.41 12.00 8.54 -92.70 -0.79 11.21 16 29 H 0.17 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.13 2.49 8.03 -2.39 -0.02 2.48 16 31 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.17 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.11 1.67 7.64 -2.38 -0.02 1.65 16 34 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -79.44 309.99 2.62 -76.82 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.33 Total: 14.84 kcal Atomic # 6 Polarization: 34.47 SS G_CDS: 6.96 Total: 41.44 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -6.53 Total: -113.61 kcal Atomic # 8 Polarization: -62.10 SS G_CDS: -0.17 Total: -62.27 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -79.44 2.62 -76.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261840839.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.080 kcal (2) G-P(sol) polarization free energy of solvation -79.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds