Wall clock time and date at job start Mon Mar 30 2020 00:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34766 * 124.17994 * 2 1 4 4 O 1.21243 * 127.15639 * 359.97438 * 3 2 1 5 5 C 1.51581 * 105.69005 * 179.97438 * 3 2 1 6 6 N 1.47317 * 103.58722 * 0.31936 * 5 3 2 7 7 C 1.46503 * 126.68513 * 179.84385 * 6 5 3 8 8 C 1.50707 * 109.46690 * 269.98018 * 7 6 5 9 9 O 1.21283 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99890 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00317 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47487 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47465 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99367 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00326 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99711 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 119.99984 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47485 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47500 * 119.99780 * 17 15 13 20 20 H 1.48504 * 109.47257 * 239.99972 * 17 15 13 21 21 C 1.33791 * 124.17835 * 180.29168 * 2 1 3 22 22 O 1.21540 * 123.76923 * 359.97080 * 21 2 1 23 23 H 1.09002 * 109.47391 * 269.70277 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.70333 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.70461 * 1 2 3 26 26 H 1.09003 * 110.76533 * 241.71585 * 5 3 2 27 27 H 1.08994 * 110.43576 * 118.76694 * 5 3 2 28 28 H 1.08990 * 109.47656 * 29.97642 * 7 6 5 29 29 H 1.08996 * 109.47168 * 149.98340 * 7 6 5 30 30 H 0.97001 * 119.99796 * 359.97438 * 10 8 7 31 31 H 1.09004 * 109.46362 * 299.99850 * 11 10 8 32 32 H 1.08996 * 109.46868 * 59.99591 * 11 10 8 33 33 H 1.09006 * 109.47110 * 299.99906 * 12 11 10 34 34 H 1.09002 * 109.47077 * 59.99571 * 12 11 10 35 35 H 0.97003 * 120.00163 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2636 -0.0004 5 6 3.6597 0.6342 0.0007 6 7 3.5338 -0.8336 -0.0070 7 6 4.6295 -1.8060 -0.0128 8 6 5.0040 -2.1323 -1.4356 9 8 4.4141 -1.6041 -2.3543 10 7 5.9946 -3.0109 -1.6872 11 6 6.3591 -3.3277 -3.0703 12 6 7.5033 -4.3433 -3.0764 13 6 7.8778 -4.6696 -4.4992 14 1 7.3519 -4.1999 -5.3172 15 6 8.8911 -5.5686 -4.7565 16 7 9.5310 -6.1409 -3.7603 17 14 9.3557 -5.9725 -6.5201 18 1 8.4915 -5.2008 -7.4489 19 1 10.7777 -5.6128 -6.7522 20 1 9.1670 -7.4256 -6.7613 21 6 2.2166 -1.1068 -0.0056 22 8 1.7603 -2.2333 -0.0109 23 1 -0.3634 -0.0053 1.0276 24 1 -0.3633 -0.8873 -0.5184 25 1 -0.3633 0.8927 -0.5093 26 1 4.1790 0.9699 0.8983 27 1 4.1768 0.9794 -0.8945 28 1 5.4924 -1.3842 0.5024 29 1 4.3110 -2.7154 0.4967 30 1 6.4666 -3.4330 -0.9524 31 1 5.4961 -3.7490 -3.5860 32 1 6.6782 -2.4183 -3.5793 33 1 8.3662 -3.9216 -2.5608 34 1 7.1846 -5.2528 -2.5672 35 1 10.2437 -6.7737 -3.9413 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261840921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:19 Heat of formation + Delta-G solvation = -75.886585 kcal Electronic energy + Delta-G solvation = -20038.342582 eV Core-core repulsion = 16651.663297 eV Total energy + Delta-G solvation = -3386.679285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.50269 -39.42927 -38.68639 -36.32983 -35.47252 -34.83862 -32.92433 -30.92031 -29.46015 -27.40234 -26.81249 -24.60811 -22.76741 -21.27247 -20.76831 -20.05858 -17.81826 -17.71335 -16.91165 -16.76031 -16.30937 -15.89043 -15.62030 -15.02458 -14.58256 -14.53483 -14.40706 -14.22249 -14.07386 -13.41159 -13.20727 -12.93995 -12.86242 -12.33952 -12.17393 -11.25216 -11.13438 -11.07856 -10.66684 -10.48862 -10.39879 -10.17404 -10.05156 -9.70814 -9.36440 -8.97973 -8.63542 -8.42382 -6.13369 -4.16216 1.38396 1.77281 2.62836 2.79117 2.81059 3.26052 3.33831 3.38552 3.61089 3.77901 4.38623 4.40407 4.70928 4.84687 4.93913 4.98475 5.02212 5.05334 5.24052 5.25396 5.34796 5.56277 6.05116 6.26686 6.28117 6.66661 6.79163 6.85112 7.08042 7.45977 7.56078 7.80844 7.85269 7.90350 8.22469 8.49104 8.89866 9.49026 10.98218 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.043700 B = 0.003102 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.574325 B = 9023.725223 C = 9058.506145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.579 5.579 3 C 0.527 3.473 4 O -0.475 6.475 5 C 0.065 3.935 6 N -0.608 5.608 7 C 0.132 3.868 8 C 0.484 3.516 9 O -0.541 6.541 10 N -0.718 5.718 11 C 0.122 3.878 12 C 0.012 3.988 13 C -0.522 4.522 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.705 3.295 22 O -0.537 6.537 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.399 0.601 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 12.260 12.717 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.325 5.325 3 C 0.314 3.686 4 O -0.345 6.345 5 C -0.061 4.061 6 N -0.345 5.345 7 C 0.007 3.993 8 C 0.267 3.733 9 O -0.419 6.419 10 N -0.369 5.369 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.407 3.593 22 O -0.410 6.410 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.233 0.767 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.166 12.432 12.069 21.172 hybrid contribution 0.632 -0.554 -0.672 1.076 sum -11.535 11.878 11.398 20.100 Atomic orbital electron populations 1.21826 0.75007 1.04840 1.03540 1.46228 1.09640 1.08098 1.68566 1.20856 0.88895 0.84675 0.74142 1.90814 1.79226 1.17900 1.46605 1.22536 0.95841 0.80871 1.06859 1.46951 1.04779 1.06171 1.76632 1.21224 0.88930 0.93419 0.95766 1.21009 0.80633 0.80219 0.91438 1.90700 1.52618 1.52273 1.46263 1.46298 1.35752 1.43725 1.11079 1.21750 0.99315 0.99664 0.79266 1.19332 0.91770 0.93155 0.98249 1.21082 1.18021 1.25134 0.91848 0.92219 1.24992 0.96052 0.95783 0.97451 1.69956 1.23428 1.29017 1.30854 0.86456 0.78319 0.78213 0.84583 1.19586 1.20912 1.20906 1.15752 0.81751 0.84199 0.77550 1.90993 1.75076 1.20309 1.54662 0.90925 0.89140 0.89415 0.85704 0.85574 0.86314 0.86193 0.76699 0.92510 0.92496 0.95874 0.95850 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.73 59.85 0.64 1.39 16 2 N -0.58 -6.44 3.00 -128.16 -0.39 -6.82 16 3 C 0.53 5.51 8.31 -10.56 -0.09 5.43 16 4 O -0.48 -5.95 17.75 5.59 0.10 -5.85 16 5 C 0.06 0.53 7.66 -4.31 -0.03 0.50 16 6 N -0.61 -6.65 2.51 -181.40 -0.45 -7.11 16 7 C 0.13 1.30 6.63 -5.19 -0.03 1.26 16 8 C 0.48 7.32 7.90 -10.98 -0.09 7.23 16 9 O -0.54 -10.55 16.43 5.56 0.09 -10.46 16 10 N -0.72 -11.27 5.56 -60.29 -0.33 -11.60 16 11 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 12 C 0.01 0.30 5.09 -27.89 -0.14 0.15 16 13 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.71 9.36 8.31 -88.02 -0.73 8.63 16 22 O -0.54 -8.92 17.15 5.33 0.09 -8.83 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.09 0.79 7.86 -51.93 -0.41 0.38 16 25 H 0.09 0.64 8.00 -51.93 -0.42 0.23 16 26 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.12 1.08 8.03 -51.93 -0.42 0.66 16 30 H 0.40 5.10 8.47 -40.82 -0.35 4.75 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -36.23 314.91 -5.85 -42.08 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.51 Total: -1.39 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -0.91 Total: 14.05 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.44 Total: -50.46 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.28 Total: -25.14 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -36.23 -5.85 -42.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261840921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.806 kcal (2) G-P(sol) polarization free energy of solvation -36.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds