Wall clock time and date at job start Mon Mar 30 2020 00:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34766 * 124.17994 * 2 1 4 4 O 1.21243 * 127.15639 * 359.97438 * 3 2 1 5 5 C 1.51581 * 105.69005 * 179.97438 * 3 2 1 6 6 N 1.47317 * 103.58722 * 0.31936 * 5 3 2 7 7 C 1.46503 * 126.68513 * 179.84385 * 6 5 3 8 8 C 1.50707 * 109.46690 * 269.98018 * 7 6 5 9 9 O 1.21283 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99890 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00317 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47487 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47465 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99367 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00326 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99711 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 119.99984 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47485 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47500 * 119.99780 * 17 15 13 20 20 H 1.48504 * 109.47257 * 239.99972 * 17 15 13 21 21 C 1.33791 * 124.17835 * 180.29168 * 2 1 3 22 22 O 1.21540 * 123.76923 * 359.97080 * 21 2 1 23 23 H 1.09002 * 109.47391 * 269.70277 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.70333 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.70461 * 1 2 3 26 26 H 1.09003 * 110.76533 * 241.71585 * 5 3 2 27 27 H 1.08994 * 110.43576 * 118.76694 * 5 3 2 28 28 H 1.08990 * 109.47656 * 29.97642 * 7 6 5 29 29 H 1.08996 * 109.47168 * 149.98340 * 7 6 5 30 30 H 0.97001 * 119.99796 * 359.97438 * 10 8 7 31 31 H 1.09004 * 109.46362 * 299.99850 * 11 10 8 32 32 H 1.08996 * 109.46868 * 59.99591 * 11 10 8 33 33 H 1.09006 * 109.47110 * 299.99906 * 12 11 10 34 34 H 1.09002 * 109.47077 * 59.99571 * 12 11 10 35 35 H 0.97003 * 120.00163 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2636 -0.0004 5 6 3.6597 0.6342 0.0007 6 7 3.5338 -0.8336 -0.0070 7 6 4.6295 -1.8060 -0.0128 8 6 5.0040 -2.1323 -1.4356 9 8 4.4141 -1.6041 -2.3543 10 7 5.9946 -3.0109 -1.6872 11 6 6.3591 -3.3277 -3.0703 12 6 7.5033 -4.3433 -3.0764 13 6 7.8778 -4.6696 -4.4992 14 1 7.3519 -4.1999 -5.3172 15 6 8.8911 -5.5686 -4.7565 16 7 9.5310 -6.1409 -3.7603 17 14 9.3557 -5.9725 -6.5201 18 1 8.4915 -5.2008 -7.4489 19 1 10.7777 -5.6128 -6.7522 20 1 9.1670 -7.4256 -6.7613 21 6 2.2166 -1.1068 -0.0056 22 8 1.7603 -2.2333 -0.0109 23 1 -0.3634 -0.0053 1.0276 24 1 -0.3633 -0.8873 -0.5184 25 1 -0.3633 0.8927 -0.5093 26 1 4.1790 0.9699 0.8983 27 1 4.1768 0.9794 -0.8945 28 1 5.4924 -1.3842 0.5024 29 1 4.3110 -2.7154 0.4967 30 1 6.4666 -3.4330 -0.9524 31 1 5.4961 -3.7490 -3.5860 32 1 6.6782 -2.4183 -3.5793 33 1 8.3662 -3.9216 -2.5608 34 1 7.1846 -5.2528 -2.5672 35 1 10.2437 -6.7737 -3.9413 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261840921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:18 Heat of formation + Delta-G solvation = -103.384503 kcal Electronic energy + Delta-G solvation = -20039.534981 eV Core-core repulsion = 16651.663297 eV Total energy + Delta-G solvation = -3387.871685 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.36943 -40.65430 -39.67983 -37.33105 -36.67216 -36.11011 -34.82170 -32.16520 -30.85095 -28.17839 -27.87054 -26.32909 -23.72094 -22.90494 -21.95312 -21.11560 -18.86721 -18.61764 -18.43569 -17.78488 -17.65254 -16.91148 -16.78132 -16.44556 -16.29237 -15.65331 -15.33085 -15.13216 -15.06386 -14.84788 -14.36693 -14.27777 -13.69471 -13.55427 -13.20698 -13.18566 -12.91112 -12.53177 -12.23186 -12.08736 -11.68635 -11.48490 -11.40816 -11.18787 -10.93182 -10.60407 -10.02688 -10.00991 -8.24245 -6.33995 0.53355 0.95323 1.40468 1.42235 1.54508 1.61727 1.80966 1.90765 2.34842 2.51117 3.01079 3.10815 3.67783 3.79670 4.18211 4.24889 4.35455 4.37806 4.40322 4.47955 4.50099 4.51496 4.69195 4.81862 4.87244 5.21579 5.29859 5.50333 5.60761 5.80023 5.97946 6.17438 6.26624 6.62100 6.79541 6.92109 7.28134 7.35365 8.87511 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.043700 B = 0.003102 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.574325 B = 9023.725223 C = 9058.506145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.583 5.583 3 C 0.526 3.474 4 O -0.498 6.498 5 C 0.070 3.930 6 N -0.606 5.606 7 C 0.140 3.860 8 C 0.482 3.518 9 O -0.589 6.589 10 N -0.712 5.712 11 C 0.142 3.858 12 C 0.023 3.977 13 C -0.547 4.547 14 H 0.055 0.945 15 C 0.009 3.991 16 N -0.924 5.924 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.278 1.278 21 C 0.697 3.303 22 O -0.580 6.580 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.173 0.827 27 H 0.131 0.869 28 H 0.176 0.824 29 H 0.134 0.866 30 H 0.416 0.584 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.015 0.985 34 H 0.008 0.992 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.804 13.098 13.613 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.328 5.328 3 C 0.316 3.684 4 O -0.371 6.371 5 C -0.055 4.055 6 N -0.343 5.343 7 C 0.016 3.984 8 C 0.268 3.732 9 O -0.469 6.469 10 N -0.364 5.364 11 C 0.018 3.982 12 C -0.015 4.015 13 C -0.586 4.586 14 H 0.074 0.926 15 C -0.190 4.190 16 N -0.564 5.564 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.204 1.204 21 C 0.400 3.600 22 O -0.457 6.457 23 H 0.109 0.891 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.191 0.809 27 H 0.149 0.851 28 H 0.193 0.807 29 H 0.152 0.848 30 H 0.252 0.748 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.027 0.973 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.524 13.293 13.003 21.877 hybrid contribution 0.404 -0.791 -0.940 1.293 sum -11.121 12.502 12.063 20.627 Atomic orbital electron populations 1.22007 0.74057 1.04924 1.04836 1.46377 1.10526 1.07886 1.68054 1.21208 0.89828 0.84089 0.73279 1.90807 1.79834 1.18615 1.47802 1.22800 0.94450 0.78953 1.09263 1.47141 1.04119 1.07616 1.75400 1.21449 0.90490 0.94607 0.91892 1.22004 0.79125 0.78666 0.93437 1.90685 1.53969 1.53858 1.48407 1.46068 1.36469 1.44267 1.09572 1.21171 0.97113 0.98020 0.81924 1.19135 0.92545 0.93306 0.96489 1.21507 1.18302 1.25410 0.93369 0.92636 1.25819 0.95991 0.95621 1.01591 1.70044 1.23947 1.29562 1.32848 0.85443 0.78201 0.78043 0.79639 1.19194 1.20082 1.20361 1.16027 0.82698 0.83996 0.77308 1.90957 1.76004 1.21936 1.56755 0.89098 0.89871 0.88493 0.80946 0.85145 0.80657 0.84839 0.74760 0.94469 0.93374 0.96675 0.97317 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.73 127.77 1.37 2.72 16 2 N -0.58 -12.37 3.00 -796.64 -2.39 -14.77 16 3 C 0.53 10.11 8.31 87.94 0.73 10.84 16 4 O -0.50 -11.80 17.75 -2.92 -0.05 -11.86 16 5 C 0.07 0.92 7.66 85.76 0.66 1.57 16 6 N -0.61 -11.68 2.51 -846.24 -2.12 -13.80 16 7 C 0.14 2.28 6.63 85.63 0.57 2.85 16 8 C 0.48 13.78 7.90 87.66 0.69 14.48 16 9 O -0.59 -22.70 16.43 -3.04 -0.05 -22.75 16 10 N -0.71 -21.51 5.56 -463.06 -2.57 -24.08 16 11 C 0.14 5.81 5.61 86.38 0.48 6.30 16 12 C 0.02 1.10 5.09 29.85 0.15 1.25 16 13 C -0.55 -30.09 9.11 25.60 0.23 -29.86 16 14 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 15 C 0.01 0.48 5.46 84.66 0.46 0.94 16 16 N -0.92 -53.10 13.29 21.45 0.28 -52.81 16 17 Si 0.96 43.17 29.54 68.60 2.03 45.19 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 21 C 0.70 17.75 8.31 179.44 1.49 19.24 16 22 O -0.58 -19.17 17.15 -3.84 -0.07 -19.24 16 23 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.08 1.48 7.86 -2.39 -0.02 1.46 16 25 H 0.10 1.38 8.00 -2.38 -0.02 1.36 16 26 H 0.17 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.18 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.13 1.96 8.03 -2.39 -0.02 1.94 16 30 H 0.42 9.84 8.47 -92.71 -0.79 9.05 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -80.16 314.91 2.23 -77.93 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 0.33 Total: 5.84 kcal Atomic # 6 Polarization: 23.49 SS G_CDS: 6.84 Total: 30.33 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -6.80 Total: -105.46 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.17 Total: -53.84 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -80.16 2.23 -77.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261840921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.450 kcal (2) G-P(sol) polarization free energy of solvation -80.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds