Wall clock time and date at job start Mon Mar 30 2020 00:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 119.99838 * 2 1 4 4 O 1.21358 * 120.00164 * 359.97438 * 3 2 1 5 5 C 1.49446 * 120.00318 * 180.02562 * 3 2 1 6 6 O 1.21348 * 119.99896 * 6.13700 * 5 3 2 7 7 N 1.34774 * 120.00275 * 186.13729 * 5 3 2 8 8 C 1.46966 * 120.59351 * 174.55524 * 7 5 3 9 9 C 1.53366 * 108.63717 * 235.24764 * 8 7 5 10 10 N 1.46964 * 108.63943 * 310.57971 * 9 8 7 11 11 C 1.34771 * 120.59668 * 235.20407 * 10 9 8 12 12 O 1.21690 * 120.00199 * 184.94452 * 11 10 9 13 13 C 1.46379 * 119.99913 * 4.94749 * 11 10 9 14 14 H 1.07997 * 119.99985 * 325.43897 * 13 11 10 15 15 C 1.40054 * 119.99813 * 145.16543 * 13 11 10 16 16 N 1.30676 * 119.99575 * 184.50797 * 15 13 11 17 17 Si 1.86793 * 119.99986 * 4.50380 * 15 13 11 18 18 H 1.48500 * 109.46996 * 94.60229 * 17 15 13 19 19 H 1.48506 * 109.47195 * 214.59680 * 17 15 13 20 20 H 1.48494 * 109.47737 * 334.59731 * 17 15 13 21 21 C 1.46969 * 118.80952 * 55.47403 * 10 9 8 22 22 C 1.46964 * 120.59538 * 354.58472 * 7 5 3 23 23 H 1.09010 * 109.46811 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47039 * 300.00080 * 1 2 3 25 25 H 1.08989 * 109.47256 * 60.00543 * 1 2 3 26 26 H 0.96996 * 120.00172 * 179.97438 * 2 1 3 27 27 H 1.09012 * 109.60629 * 115.50769 * 8 7 5 28 28 H 1.09003 * 109.75338 * 355.08112 * 8 7 5 29 29 H 1.09004 * 109.61286 * 190.83211 * 9 8 7 30 30 H 1.09005 * 109.75112 * 70.41079 * 9 8 7 31 31 H 0.97001 * 119.99214 * 179.97438 * 16 15 13 32 32 H 1.08999 * 109.60683 * 64.27023 * 21 10 9 33 33 H 1.09003 * 109.60751 * 184.78012 * 21 10 9 34 34 H 1.09005 * 109.60945 * 244.49781 * 22 7 5 35 35 H 1.08997 * 109.60763 * 4.82818 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5320 2.2182 -0.0005 5 6 3.6333 1.1673 -0.0006 6 8 4.2401 0.1225 -0.1134 7 7 4.3072 2.3278 0.1242 8 6 5.7719 2.3330 0.2449 9 6 6.1557 3.0906 1.5219 10 7 5.4390 4.3735 1.5404 11 6 6.1128 5.5339 1.6661 12 8 5.5043 6.5826 1.7706 13 6 7.5765 5.5329 1.6768 14 1 8.1126 4.7115 2.1287 15 6 8.2818 6.5943 1.0958 16 7 9.5860 6.5518 1.0266 17 14 7.3581 8.0703 0.4197 18 1 7.2969 9.1328 1.4554 19 1 8.0634 8.5887 -0.7800 20 1 5.9797 7.6633 0.0462 21 6 3.9739 4.3679 1.4253 22 6 3.5905 3.6107 0.1426 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 1.9500 -0.8400 0.0004 27 1 6.2085 2.8308 -0.6210 28 1 6.1404 1.3087 0.3024 29 1 7.2306 3.2718 1.5307 30 1 5.8768 2.5031 2.3967 31 1 10.0744 7.2868 0.6239 32 1 3.5408 3.8680 2.2918 33 1 3.6074 5.3930 1.3703 34 1 3.8717 4.1995 -0.7305 35 1 2.5157 3.4295 0.1308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262031623.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:34 Heat of formation + Delta-G solvation = -73.341782 kcal Electronic energy + Delta-G solvation = -21109.027679 eV Core-core repulsion = 17722.458745 eV Total energy + Delta-G solvation = -3386.568934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.98642 -38.99330 -38.16552 -36.46772 -35.03658 -33.15995 -32.83660 -31.02458 -28.45931 -27.47045 -26.19595 -24.10026 -23.14090 -21.54246 -20.56671 -19.20868 -17.72827 -17.21095 -16.57587 -16.11402 -15.98554 -15.46894 -15.20761 -14.86530 -14.79670 -14.57485 -14.05800 -13.81751 -13.33673 -12.95271 -12.68435 -12.58807 -12.51819 -12.23527 -11.75428 -11.62855 -11.05294 -10.98876 -10.85537 -10.77151 -10.31158 -9.69897 -9.63241 -9.13154 -9.00254 -8.80860 -8.01977 -7.47617 -6.59774 -4.78031 1.29858 2.24148 3.10498 3.35095 3.41651 3.45413 3.71114 4.14749 4.17063 4.22411 4.45958 4.81872 5.11227 5.20514 5.29535 5.32771 5.39298 5.50137 5.61416 5.71059 5.80238 5.88977 6.21305 6.27803 6.32264 6.44772 6.49869 6.82368 7.02209 7.28843 7.56728 7.63956 7.86763 7.89764 8.31581 8.70371 9.08327 9.93982 10.42969 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037112 B = 0.004915 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.297397 B = 5695.675780 C = 6132.951110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.705 5.705 3 C 0.511 3.489 4 O -0.505 6.505 5 C 0.503 3.497 6 O -0.534 6.534 7 N -0.567 5.567 8 C 0.092 3.908 9 C 0.109 3.891 10 N -0.634 5.634 11 C 0.563 3.437 12 O -0.604 6.604 13 C -0.540 4.540 14 H 0.091 0.909 15 C 0.104 3.896 16 N -0.838 5.838 17 Si 0.929 3.071 18 H -0.277 1.277 19 H -0.311 1.311 20 H -0.242 1.242 21 C 0.107 3.893 22 C 0.031 3.969 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.415 0.585 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.051 0.949 31 H 0.280 0.720 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.086 -13.700 -3.234 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.357 5.357 3 C 0.293 3.707 4 O -0.382 6.382 5 C 0.285 3.715 6 O -0.412 6.412 7 N -0.299 5.299 8 C -0.031 4.031 9 C -0.016 4.016 10 N -0.369 5.369 11 C 0.369 3.631 12 O -0.493 6.493 13 C -0.577 4.577 14 H 0.109 0.891 15 C -0.112 4.112 16 N -0.469 5.469 17 Si 0.758 3.242 18 H -0.202 1.202 19 H -0.241 1.241 20 H -0.166 1.166 21 C -0.018 4.018 22 C -0.091 4.091 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.251 0.749 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.324 -12.894 -3.262 19.546 hybrid contribution 0.122 0.212 -0.239 0.342 sum -14.202 -12.682 -3.501 19.359 Atomic orbital electron populations 1.21699 0.78325 1.02949 1.02967 1.45595 1.08157 1.08848 1.73103 1.20397 0.88983 0.84295 0.76984 1.90287 1.69545 1.29413 1.48950 1.19858 0.87873 0.84492 0.79308 1.90732 1.69496 1.31056 1.49883 1.48047 1.08147 1.06218 1.67491 1.22325 0.78075 1.02496 1.00199 1.21849 1.00275 0.84640 0.94795 1.47992 1.04849 1.06471 1.77577 1.18502 0.89015 0.80788 0.74793 1.90426 1.71054 1.31027 1.56750 1.20630 0.87837 1.08603 1.40593 0.89087 1.25563 0.94676 0.98419 0.92544 1.69528 1.07627 1.32397 1.37334 0.85943 0.80738 0.80269 0.77200 1.20229 1.24083 1.16594 1.21711 0.83065 1.01606 0.95387 1.23940 1.03141 0.82814 0.99191 0.90013 0.91500 0.91544 0.74933 0.90105 0.88420 0.86666 0.93094 0.90962 0.93171 0.88419 0.91179 0.82249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.70 59.85 0.64 1.16 16 2 N -0.70 -6.27 5.70 -67.52 -0.39 -6.66 16 3 C 0.51 6.39 7.81 -11.59 -0.09 6.30 16 4 O -0.50 -7.11 13.01 5.49 0.07 -7.04 16 5 C 0.50 7.30 7.75 -11.59 -0.09 7.21 16 6 O -0.53 -8.34 15.92 5.50 0.09 -8.25 16 7 N -0.57 -8.86 2.95 -172.72 -0.51 -9.37 16 8 C 0.09 1.46 6.58 -3.60 -0.02 1.44 16 9 C 0.11 1.96 6.50 -3.60 -0.02 1.94 16 10 N -0.63 -13.53 2.94 -173.87 -0.51 -14.04 16 11 C 0.56 14.68 6.97 -12.99 -0.09 14.59 16 12 O -0.60 -17.19 12.16 5.20 0.06 -17.12 16 13 C -0.54 -14.86 8.90 -35.63 -0.32 -15.18 16 14 H 0.09 2.50 6.70 -52.49 -0.35 2.15 16 15 C 0.10 2.92 5.52 -17.36 -0.10 2.82 16 16 N -0.84 -23.58 13.92 55.55 0.77 -22.80 16 17 Si 0.93 23.99 26.61 -169.99 -4.52 19.47 16 18 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.31 -7.68 7.11 56.52 0.40 -7.28 16 20 H -0.24 -6.55 5.93 56.52 0.34 -6.21 16 21 C 0.11 1.97 6.61 -3.37 -0.02 1.95 16 22 C 0.03 0.49 6.47 -3.37 -0.02 0.47 16 23 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.43 8.14 -51.94 -0.42 0.01 16 26 H 0.41 3.11 8.32 -40.82 -0.34 2.77 16 27 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.10 1.43 7.03 -51.93 -0.37 1.07 16 29 H 0.12 2.21 5.61 -51.93 -0.29 1.91 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.28 7.29 8.29 -40.82 -0.34 6.95 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.95 7.01 -51.93 -0.36 1.58 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.16 2.44 3.67 -57.28 -0.21 2.23 16 LS Contribution 290.79 15.07 4.38 4.38 Total: -1.00 -33.23 290.79 -4.77 -38.00 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.08 Total: 0.73 kcal Atomic # 6 Polarization: 22.83 SS G_CDS: -0.13 Total: 22.70 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.63 Total: -52.87 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: 0.22 Total: -32.41 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -4.52 Total: 19.47 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.23 -4.77 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262031623.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.343 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds