Wall clock time and date at job start Mon Mar 30 2020 00:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34772 * 119.99838 * 2 1 4 4 O 1.21358 * 120.00164 * 359.97438 * 3 2 1 5 5 C 1.49446 * 120.00318 * 180.02562 * 3 2 1 6 6 O 1.21348 * 119.99896 * 6.13700 * 5 3 2 7 7 N 1.34774 * 120.00275 * 186.13729 * 5 3 2 8 8 C 1.46966 * 120.59351 * 174.55524 * 7 5 3 9 9 C 1.53366 * 108.63717 * 235.24764 * 8 7 5 10 10 N 1.46964 * 108.63943 * 310.57971 * 9 8 7 11 11 C 1.34771 * 120.59668 * 235.20407 * 10 9 8 12 12 O 1.21690 * 120.00199 * 184.94452 * 11 10 9 13 13 C 1.46379 * 119.99913 * 4.94749 * 11 10 9 14 14 H 1.07997 * 119.99985 * 325.43897 * 13 11 10 15 15 C 1.40054 * 119.99813 * 145.16543 * 13 11 10 16 16 N 1.30676 * 119.99575 * 184.50797 * 15 13 11 17 17 Si 1.86793 * 119.99986 * 4.50380 * 15 13 11 18 18 H 1.48500 * 109.46996 * 94.60229 * 17 15 13 19 19 H 1.48506 * 109.47195 * 214.59680 * 17 15 13 20 20 H 1.48494 * 109.47737 * 334.59731 * 17 15 13 21 21 C 1.46969 * 118.80952 * 55.47403 * 10 9 8 22 22 C 1.46964 * 120.59538 * 354.58472 * 7 5 3 23 23 H 1.09010 * 109.46811 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47039 * 300.00080 * 1 2 3 25 25 H 1.08989 * 109.47256 * 60.00543 * 1 2 3 26 26 H 0.96996 * 120.00172 * 179.97438 * 2 1 3 27 27 H 1.09012 * 109.60629 * 115.50769 * 8 7 5 28 28 H 1.09003 * 109.75338 * 355.08112 * 8 7 5 29 29 H 1.09004 * 109.61286 * 190.83211 * 9 8 7 30 30 H 1.09005 * 109.75112 * 70.41079 * 9 8 7 31 31 H 0.97001 * 119.99214 * 179.97438 * 16 15 13 32 32 H 1.08999 * 109.60683 * 64.27023 * 21 10 9 33 33 H 1.09003 * 109.60751 * 184.78012 * 21 10 9 34 34 H 1.09005 * 109.60945 * 244.49781 * 22 7 5 35 35 H 1.08997 * 109.60763 * 4.82818 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5320 2.2182 -0.0005 5 6 3.6333 1.1673 -0.0006 6 8 4.2401 0.1225 -0.1134 7 7 4.3072 2.3278 0.1242 8 6 5.7719 2.3330 0.2449 9 6 6.1557 3.0906 1.5219 10 7 5.4390 4.3735 1.5404 11 6 6.1128 5.5339 1.6661 12 8 5.5043 6.5826 1.7706 13 6 7.5765 5.5329 1.6768 14 1 8.1126 4.7115 2.1287 15 6 8.2818 6.5943 1.0958 16 7 9.5860 6.5518 1.0266 17 14 7.3581 8.0703 0.4197 18 1 7.2969 9.1328 1.4554 19 1 8.0634 8.5887 -0.7800 20 1 5.9797 7.6633 0.0462 21 6 3.9739 4.3679 1.4253 22 6 3.5905 3.6107 0.1426 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 1.9500 -0.8400 0.0004 27 1 6.2085 2.8308 -0.6210 28 1 6.1404 1.3087 0.3024 29 1 7.2306 3.2718 1.5307 30 1 5.8768 2.5031 2.3967 31 1 10.0744 7.2868 0.6239 32 1 3.5408 3.8680 2.2918 33 1 3.6074 5.3930 1.3703 34 1 3.8717 4.1995 -0.7305 35 1 2.5157 3.4295 0.1308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262031623.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:34 Heat of formation + Delta-G solvation = -99.935096 kcal Electronic energy + Delta-G solvation = -21110.180852 eV Core-core repulsion = 17722.458745 eV Total energy + Delta-G solvation = -3387.722107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.10131 -40.44527 -39.55140 -37.99842 -36.01370 -34.96608 -34.66331 -32.45742 -29.80990 -28.69867 -27.83564 -25.32593 -24.53036 -22.89535 -21.78558 -20.76983 -19.10588 -18.63296 -18.17165 -17.57449 -17.19930 -16.83493 -16.65500 -16.23883 -16.11339 -15.79725 -15.69454 -15.18972 -14.63166 -14.51667 -14.14974 -14.07014 -13.78251 -13.38068 -13.24917 -13.09180 -13.00978 -12.48220 -12.33013 -12.31987 -12.06113 -11.69455 -11.13388 -10.41868 -10.38790 -10.16480 -10.00340 -9.17863 -8.73916 -6.92977 0.24298 1.21545 1.32139 1.35508 1.62302 2.01671 2.09629 2.24604 2.37043 2.68126 3.20153 3.21429 3.87979 3.90905 4.17138 4.24444 4.38732 4.42798 4.51304 4.63201 4.66990 4.70244 4.84086 4.95757 4.97867 5.10348 5.18330 5.41242 5.70845 5.87537 5.95537 6.14231 6.24091 6.61848 6.65618 6.87580 7.06584 7.91230 8.32973 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037112 B = 0.004915 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.297397 B = 5695.675780 C = 6132.951110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.686 5.686 3 C 0.511 3.489 4 O -0.524 6.524 5 C 0.505 3.495 6 O -0.543 6.543 7 N -0.575 5.575 8 C 0.100 3.900 9 C 0.109 3.891 10 N -0.633 5.633 11 C 0.560 3.440 12 O -0.633 6.633 13 C -0.554 4.554 14 H 0.083 0.917 15 C 0.072 3.928 16 N -0.861 5.861 17 Si 0.974 3.026 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.263 1.263 21 C 0.106 3.894 22 C 0.045 3.955 23 H 0.118 0.882 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.423 0.577 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.289 0.711 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.673 -15.405 -3.689 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.338 5.338 3 C 0.292 3.708 4 O -0.403 6.403 5 C 0.288 3.712 6 O -0.421 6.421 7 N -0.307 5.307 8 C -0.023 4.023 9 C -0.015 4.015 10 N -0.366 5.366 11 C 0.365 3.635 12 O -0.524 6.524 13 C -0.591 4.591 14 H 0.101 0.899 15 C -0.142 4.142 16 N -0.493 5.493 17 Si 0.803 3.197 18 H -0.209 1.209 19 H -0.220 1.220 20 H -0.188 1.188 21 C -0.018 4.018 22 C -0.077 4.077 23 H 0.136 0.864 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.261 0.739 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.921 -14.684 -3.730 21.977 hybrid contribution 0.542 0.576 -0.062 0.793 sum -15.379 -14.108 -3.792 21.211 Atomic orbital electron populations 1.21971 0.76226 1.05366 1.02803 1.45627 1.09399 1.07986 1.70773 1.20019 0.87878 0.85152 0.77717 1.90246 1.69243 1.30214 1.50609 1.20231 0.88954 0.83735 0.78246 1.90727 1.70112 1.31230 1.50027 1.48047 1.07895 1.06499 1.68264 1.22162 0.78731 1.02830 0.98558 1.21958 0.99206 0.83474 0.96847 1.47924 1.06312 1.06357 1.76052 1.18382 0.88756 0.81728 0.74627 1.90399 1.71482 1.32480 1.57999 1.20804 0.88910 1.08535 1.40833 0.89885 1.26054 0.95216 0.99899 0.93033 1.69539 1.08098 1.33382 1.38263 0.85274 0.78927 0.78331 0.77164 1.20902 1.22024 1.18816 1.21870 0.81025 1.01379 0.97519 1.23837 1.03945 0.82640 0.97231 0.86395 0.91668 0.91645 0.73912 0.90853 0.86791 0.88149 0.91224 0.90069 0.91441 0.90121 0.92132 0.80806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.70 127.77 1.37 2.08 16 2 N -0.69 -10.10 5.70 -485.88 -2.77 -12.87 16 3 C 0.51 11.52 7.81 87.27 0.68 12.20 16 4 O -0.52 -13.62 13.01 -3.27 -0.04 -13.66 16 5 C 0.51 13.55 7.75 87.27 0.68 14.22 16 6 O -0.54 -15.63 15.92 -3.24 -0.05 -15.68 16 7 N -0.57 -17.02 2.95 -818.73 -2.41 -19.43 16 8 C 0.10 3.06 6.58 86.41 0.57 3.63 16 9 C 0.11 3.83 6.50 86.41 0.56 4.39 16 10 N -0.63 -26.84 2.94 -822.22 -2.42 -29.26 16 11 C 0.56 29.49 6.97 86.36 0.60 30.09 16 12 O -0.63 -36.37 12.16 -4.32 -0.05 -36.42 16 13 C -0.55 -30.87 8.90 24.83 0.22 -30.65 16 14 H 0.08 4.66 6.70 -2.91 -0.02 4.64 16 15 C 0.07 4.04 5.52 85.31 0.47 4.51 16 16 N -0.86 -48.51 13.92 21.84 0.30 -48.21 16 17 Si 0.97 49.72 26.61 68.60 1.83 51.55 16 18 H -0.28 -14.59 7.11 99.48 0.71 -13.89 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 20 H -0.26 -14.27 5.93 99.48 0.59 -13.68 16 21 C 0.11 3.82 6.61 86.56 0.57 4.39 16 22 C 0.05 1.39 6.47 86.56 0.56 1.95 16 23 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16 24 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.42 4.95 8.32 -92.71 -0.77 4.18 16 27 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.11 3.13 7.03 -2.39 -0.02 3.12 16 29 H 0.10 3.86 5.61 -2.38 -0.01 3.85 16 30 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.29 14.95 8.29 -92.71 -0.77 14.18 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 3.22 7.01 -2.39 -0.02 3.20 16 34 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.18 5.04 3.67 -87.17 -0.32 4.72 16 Total: -1.00 -70.30 290.79 0.60 -69.70 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -0.06 Total: 7.46 kcal Atomic # 6 Polarization: 40.55 SS G_CDS: 6.28 Total: 46.83 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -7.30 Total: -109.77 kcal Atomic # 8 Polarization: -65.62 SS G_CDS: -0.15 Total: -65.77 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 1.83 Total: 51.55 kcal Total: -70.30 0.60 -69.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262031623.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.239 kcal (2) G-P(sol) polarization free energy of solvation -70.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds