Wall clock time and date at job start Mon Mar 30 2020 00:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99949 * 2 1 4 4 C 1.53004 * 109.47006 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47000 * 65.00358 * 4 3 2 6 6 C 1.36943 * 119.99966 * 269.99833 * 5 4 3 7 7 H 1.08002 * 119.99581 * 142.34977 * 6 5 4 8 8 C 1.38812 * 119.99989 * 322.34862 * 6 5 4 9 9 N 1.31613 * 119.99671 * 340.15768 * 8 6 5 10 10 Si 1.86793 * 119.99802 * 160.15919 * 8 6 5 11 11 H 1.48500 * 109.47288 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47031 * 120.00211 * 10 8 6 13 13 H 1.48498 * 109.47063 * 239.99916 * 10 8 6 14 14 C 1.46506 * 120.00020 * 89.99993 * 5 4 3 15 15 C 1.50699 * 109.46949 * 264.57571 * 14 5 4 16 16 C 1.38262 * 119.93765 * 272.54128 * 15 14 5 17 17 C 1.38180 * 120.09415 * 179.72606 * 16 15 14 18 18 C 1.38661 * 119.96952 * 0.52518 * 17 16 15 19 19 O 1.35959 * 120.06380 * 179.74893 * 18 17 16 20 20 C 1.38906 * 119.87615 * 359.47592 * 18 17 16 21 21 F 1.35095 * 120.05092 * 180.27769 * 20 18 17 22 22 C 1.38264 * 119.93773 * 92.51557 * 15 14 5 23 23 H 1.09003 * 109.46967 * 299.99888 * 1 2 3 24 24 H 1.08995 * 109.46986 * 59.99552 * 1 2 3 25 25 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47075 * 60.00565 * 3 2 1 27 27 H 1.08997 * 109.47542 * 300.00275 * 3 2 1 28 28 H 1.08999 * 109.47006 * 304.99971 * 4 3 2 29 29 H 1.09002 * 109.47021 * 185.00575 * 4 3 2 30 30 H 0.97003 * 119.99689 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46999 * 144.57579 * 14 5 4 32 32 H 1.08995 * 109.47006 * 24.57526 * 14 5 4 33 33 H 1.08001 * 119.95519 * 359.97438 * 16 15 14 34 34 H 1.08005 * 120.01700 * 180.25937 * 17 16 15 35 35 H 0.96701 * 113.99905 * 269.72664 * 19 18 17 36 36 H 1.07995 * 119.97852 * 0.02611 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3345 7 1 3.8220 -1.3092 -2.2448 8 6 4.5751 -1.5198 -0.2495 9 7 5.2661 -0.9131 0.6922 10 14 4.2367 -3.3526 -0.1259 11 1 3.4443 -3.7902 -1.3031 12 1 5.5239 -4.0924 -0.0924 13 1 3.4726 -3.6323 1.1162 14 6 4.2883 1.4000 -2.4130 15 6 3.0804 1.4832 -3.3102 16 6 2.8759 0.5223 -4.2831 17 6 1.7665 0.5924 -5.1038 18 6 0.8625 1.6338 -4.9591 19 8 -0.2271 1.7074 -5.7690 20 6 1.0691 2.5985 -3.9813 21 9 0.1876 3.6115 -3.8335 22 6 2.1784 2.5202 -3.1587 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6887 1.8464 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8508 0.5685 0.8427 29 1 3.9785 2.1765 0.0903 30 1 5.5993 -1.4178 1.4507 31 1 5.1204 0.9610 -2.9636 32 1 4.5618 2.4004 -2.0780 33 1 3.5822 -0.2865 -4.3991 34 1 1.6058 -0.1613 -5.8606 35 1 -0.0811 2.2140 -6.5796 36 1 2.3405 3.2695 -2.3980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262372167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:29 Heat of formation + Delta-G solvation = -83.373113 kcal Electronic energy + Delta-G solvation = -21359.312584 eV Core-core repulsion = 17952.388697 eV Total energy + Delta-G solvation = -3406.923887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.63446 -39.31296 -37.39737 -36.66932 -34.98824 -31.67673 -30.36935 -30.13789 -28.29551 -25.61865 -25.45643 -23.13031 -22.59034 -21.40437 -20.20947 -18.42735 -16.86312 -16.61621 -16.18997 -15.74897 -15.67815 -15.10113 -14.79597 -14.68397 -14.06017 -13.85873 -13.66298 -13.48075 -13.42669 -13.00147 -12.17184 -11.85679 -11.77833 -11.60034 -11.27074 -10.94063 -10.81514 -10.69955 -10.64436 -10.33585 -10.09294 -9.96356 -9.70834 -8.86364 -8.50391 -8.45292 -8.12272 -6.58104 -5.73003 -3.32010 1.40319 1.48237 3.42994 3.51523 3.54493 3.79583 4.17736 4.55279 4.57495 4.73296 5.02453 5.30720 5.44516 5.54015 5.58584 5.64227 5.80983 5.88060 6.00013 6.12468 6.13923 6.20585 6.28317 6.32297 6.41515 6.50605 6.54618 6.67766 6.76505 7.03459 7.07300 7.66402 7.69644 7.87653 8.11072 8.57191 9.20232 9.83777 10.37446 11.28452 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.006668 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.646543 B = 4198.059845 C = 4424.390250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.041 3.959 4 C 0.140 3.860 5 N -0.566 5.566 6 C -0.241 4.241 7 H 0.058 0.942 8 C 0.020 3.980 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.289 1.289 14 C 0.174 3.826 15 C -0.050 4.050 16 C -0.096 4.096 17 C -0.118 4.118 18 C 0.049 3.951 19 O -0.492 6.492 20 C 0.065 3.935 21 F -0.143 7.143 22 C -0.138 4.138 23 H 0.026 0.974 24 H 0.028 0.972 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.032 0.968 28 H 0.107 0.893 29 H 0.040 0.960 30 H 0.253 0.747 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.382 0.618 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 6.712 -8.378 12.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C -0.038 4.038 4 C 0.014 3.986 5 N -0.284 5.284 6 C -0.371 4.371 7 H 0.076 0.924 8 C -0.179 4.179 9 N -0.536 5.536 10 Si 0.730 3.270 11 H -0.202 1.202 12 H -0.221 1.221 13 H -0.215 1.215 14 C 0.047 3.953 15 C -0.053 4.053 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.003 3.997 19 O -0.301 6.301 20 C 0.046 3.954 21 F -0.122 7.122 22 C -0.157 4.157 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.125 0.875 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.237 0.763 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.962 6.159 -7.750 11.556 hybrid contribution -0.787 -0.235 -0.156 0.836 sum -6.750 5.924 -7.907 11.966 Atomic orbital electron populations 1.22617 0.84290 1.01411 0.98381 1.88195 1.16474 1.27581 1.94818 1.23516 0.98879 0.84336 0.97060 1.21136 0.87491 0.96693 0.93267 1.43631 1.75282 1.02862 1.06658 1.18862 1.36422 0.81328 1.00473 0.92448 1.25035 0.96429 0.97752 0.98710 1.69938 1.35660 1.35499 1.12496 0.86295 0.77268 0.85598 0.77887 1.20209 1.22080 1.21517 1.19979 0.90887 0.95442 0.89021 1.21191 0.98563 0.91534 0.94044 1.21081 0.97170 0.98647 0.94547 1.21275 0.93600 0.97780 1.01052 1.18315 0.90116 0.96110 0.95112 1.84895 1.33489 1.76473 1.35204 1.18112 0.90135 0.87131 1.00046 1.91440 1.67542 1.57979 1.95230 1.20957 0.93867 1.01044 0.99844 0.95576 0.95378 0.90769 0.96014 0.94963 0.87522 0.94139 0.93722 0.91879 0.93208 0.84882 0.85161 0.76311 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.67 16 2 O -0.35 -8.05 10.18 -35.23 -0.36 -8.41 16 3 C 0.04 0.85 6.28 37.16 0.23 1.09 16 4 C 0.14 3.19 5.76 -4.04 -0.02 3.17 16 5 N -0.57 -13.24 2.40 -174.61 -0.42 -13.66 16 6 C -0.24 -6.33 8.96 -15.06 -0.13 -6.46 16 7 H 0.06 1.52 7.89 -52.49 -0.41 1.10 16 8 C 0.02 0.55 4.99 -17.43 -0.09 0.46 16 9 N -0.89 -25.21 11.37 55.49 0.63 -24.57 16 10 Si 0.90 22.03 29.60 -169.99 -5.03 17.00 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 C 0.17 3.34 5.84 -5.19 -0.03 3.31 16 15 C -0.05 -0.87 5.37 -104.60 -0.56 -1.43 16 16 C -0.10 -1.58 9.70 -39.59 -0.38 -1.96 16 17 C -0.12 -1.78 9.98 -39.45 -0.39 -2.18 16 18 C 0.05 0.76 6.71 -39.18 -0.26 0.50 16 19 O -0.49 -6.78 13.37 -19.61 -0.26 -7.04 16 20 C 0.07 1.08 7.31 -39.30 -0.29 0.79 16 21 F -0.14 -2.37 17.11 2.25 0.04 -2.33 16 22 C -0.14 -2.28 7.80 -39.54 -0.31 -2.59 16 23 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.64 5.73 -51.93 -0.30 0.34 16 28 H 0.11 2.82 5.46 -51.93 -0.28 2.53 16 29 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 30 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 32 H 0.05 0.87 7.76 -51.93 -0.40 0.47 16 33 H 0.13 2.15 8.05 -52.49 -0.42 1.73 16 34 H 0.13 1.66 8.06 -52.48 -0.42 1.23 16 35 H 0.38 3.23 9.06 45.56 0.41 3.65 16 36 H 0.13 2.03 7.78 -52.49 -0.41 1.62 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -30.76 311.63 -5.72 -36.48 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.89 Total: 1.48 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.13 Total: -3.65 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.21 Total: -38.23 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.62 Total: -15.45 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.76 -5.72 -36.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262372167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.889 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds