Wall clock time and date at job start Mon Mar 30 2020 00:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99949 * 2 1 4 4 C 1.53004 * 109.47006 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47000 * 65.00358 * 4 3 2 6 6 C 1.36943 * 119.99966 * 269.99833 * 5 4 3 7 7 H 1.08002 * 119.99581 * 142.34977 * 6 5 4 8 8 C 1.38812 * 119.99989 * 322.34862 * 6 5 4 9 9 N 1.31613 * 119.99671 * 340.15768 * 8 6 5 10 10 Si 1.86793 * 119.99802 * 160.15919 * 8 6 5 11 11 H 1.48500 * 109.47288 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47031 * 120.00211 * 10 8 6 13 13 H 1.48498 * 109.47063 * 239.99916 * 10 8 6 14 14 C 1.46506 * 120.00020 * 89.99993 * 5 4 3 15 15 C 1.50699 * 109.46949 * 264.57571 * 14 5 4 16 16 C 1.38262 * 119.93765 * 272.54128 * 15 14 5 17 17 C 1.38180 * 120.09415 * 179.72606 * 16 15 14 18 18 C 1.38661 * 119.96952 * 0.52518 * 17 16 15 19 19 O 1.35959 * 120.06380 * 179.74893 * 18 17 16 20 20 C 1.38906 * 119.87615 * 359.47592 * 18 17 16 21 21 F 1.35095 * 120.05092 * 180.27769 * 20 18 17 22 22 C 1.38264 * 119.93773 * 92.51557 * 15 14 5 23 23 H 1.09003 * 109.46967 * 299.99888 * 1 2 3 24 24 H 1.08995 * 109.46986 * 59.99552 * 1 2 3 25 25 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47075 * 60.00565 * 3 2 1 27 27 H 1.08997 * 109.47542 * 300.00275 * 3 2 1 28 28 H 1.08999 * 109.47006 * 304.99971 * 4 3 2 29 29 H 1.09002 * 109.47021 * 185.00575 * 4 3 2 30 30 H 0.97003 * 119.99689 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46999 * 144.57579 * 14 5 4 32 32 H 1.08995 * 109.47006 * 24.57526 * 14 5 4 33 33 H 1.08001 * 119.95519 * 359.97438 * 16 15 14 34 34 H 1.08005 * 120.01700 * 180.25937 * 17 16 15 35 35 H 0.96701 * 113.99905 * 269.72664 * 19 18 17 36 36 H 1.07995 * 119.97852 * 0.02611 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3345 7 1 3.8220 -1.3092 -2.2448 8 6 4.5751 -1.5198 -0.2495 9 7 5.2661 -0.9131 0.6922 10 14 4.2367 -3.3526 -0.1259 11 1 3.4443 -3.7902 -1.3031 12 1 5.5239 -4.0924 -0.0924 13 1 3.4726 -3.6323 1.1162 14 6 4.2883 1.4000 -2.4130 15 6 3.0804 1.4832 -3.3102 16 6 2.8759 0.5223 -4.2831 17 6 1.7665 0.5924 -5.1038 18 6 0.8625 1.6338 -4.9591 19 8 -0.2271 1.7074 -5.7690 20 6 1.0691 2.5985 -3.9813 21 9 0.1876 3.6115 -3.8335 22 6 2.1784 2.5202 -3.1587 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6887 1.8464 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8508 0.5685 0.8427 29 1 3.9785 2.1765 0.0903 30 1 5.5993 -1.4178 1.4507 31 1 5.1204 0.9610 -2.9636 32 1 4.5618 2.4004 -2.0780 33 1 3.5822 -0.2865 -4.3991 34 1 1.6058 -0.1613 -5.8606 35 1 -0.0811 2.2140 -6.5796 36 1 2.3405 3.2695 -2.3980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262372167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:28 Heat of formation + Delta-G solvation = -103.472450 kcal Electronic energy + Delta-G solvation = -21360.184157 eV Core-core repulsion = 17952.388697 eV Total energy + Delta-G solvation = -3407.795460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.89509 -40.55886 -38.91781 -38.02194 -36.64202 -33.49998 -31.70538 -31.60657 -29.88887 -27.25285 -27.00016 -24.78914 -23.85809 -22.85485 -21.87223 -19.57018 -18.64478 -17.93058 -17.57324 -17.28884 -16.95858 -16.74750 -16.43776 -16.06554 -15.68033 -15.40325 -15.09501 -14.95147 -14.85778 -14.42985 -13.55303 -13.41896 -13.30517 -13.04646 -12.87378 -12.69840 -12.44737 -12.37466 -12.28615 -11.89674 -11.76124 -11.53817 -11.50778 -10.46796 -10.35912 -9.80040 -9.42608 -8.48778 -7.71895 -5.33230 0.15177 0.24138 1.46907 1.52513 1.59612 2.48772 2.65864 3.02640 3.19611 3.36531 3.40893 3.80400 3.85494 4.04259 4.32345 4.36419 4.39960 4.48927 4.62010 4.67856 4.72997 4.77702 4.82870 4.92772 4.97313 5.04394 5.11559 5.19140 5.29895 5.72103 5.76418 5.85370 5.86298 6.48755 6.67070 6.75233 7.26706 7.93832 8.44014 9.24871 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.006668 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.646543 B = 4198.059845 C = 4424.390250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.392 6.392 3 C 0.049 3.951 4 C 0.139 3.861 5 N -0.580 5.580 6 C -0.231 4.231 7 H 0.052 0.948 8 C -0.027 4.027 9 N -0.920 5.920 10 Si 0.945 3.055 11 H -0.272 1.272 12 H -0.293 1.293 13 H -0.299 1.299 14 C 0.175 3.825 15 C -0.064 4.064 16 C -0.102 4.102 17 C -0.115 4.115 18 C 0.059 3.941 19 O -0.499 6.499 20 C 0.052 3.948 21 F -0.145 7.145 22 C -0.136 4.136 23 H 0.047 0.953 24 H 0.031 0.969 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.247 0.753 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.408 0.592 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 7.187 -9.730 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.311 6.311 3 C -0.030 4.030 4 C 0.013 3.987 5 N -0.300 5.300 6 C -0.361 4.361 7 H 0.070 0.930 8 C -0.224 4.224 9 N -0.566 5.566 10 Si 0.775 3.225 11 H -0.197 1.197 12 H -0.220 1.220 13 H -0.227 1.227 14 C 0.050 3.950 15 C -0.067 4.067 16 C -0.121 4.121 17 C -0.133 4.133 18 C 0.013 3.987 19 O -0.311 6.311 20 C 0.032 3.968 21 F -0.124 7.124 22 C -0.155 4.155 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.173 0.827 35 H 0.267 0.733 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.358 6.660 -9.151 13.500 hybrid contribution -0.450 -0.304 0.144 0.562 sum -7.808 6.355 -9.007 13.509 Atomic orbital electron populations 1.22762 0.82039 1.02486 0.99534 1.88124 1.19081 1.28784 1.95124 1.23379 0.97271 0.84015 0.98309 1.21042 0.89194 0.96589 0.91892 1.43758 1.75791 1.02446 1.07956 1.18981 1.34362 0.82957 0.99814 0.93009 1.25545 0.97322 1.00343 0.99153 1.70046 1.37339 1.36215 1.12998 0.85569 0.76873 0.82803 0.77259 1.19685 1.21989 1.22653 1.20007 0.91683 0.95444 0.87909 1.20883 0.98259 0.92764 0.94758 1.21176 0.97849 0.98376 0.94707 1.21465 0.92713 0.98100 1.01059 1.18389 0.89975 0.95487 0.94805 1.84826 1.32831 1.77105 1.36376 1.18227 0.90293 0.87611 1.00622 1.91433 1.67555 1.58104 1.95304 1.20975 0.93693 1.00870 0.99970 0.93474 0.95004 0.89863 0.94126 0.94051 0.91181 0.92489 0.94364 0.92358 0.91613 0.85002 0.82666 0.73323 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.23 16 2 O -0.39 -17.49 10.18 -148.98 -1.52 -19.01 16 3 C 0.05 1.96 6.28 71.98 0.45 2.41 16 4 C 0.14 6.28 5.76 86.38 0.50 6.77 16 5 N -0.58 -26.93 2.40 -706.33 -1.70 -28.62 16 6 C -0.23 -12.09 8.96 84.03 0.75 -11.34 16 7 H 0.05 2.73 7.89 -2.91 -0.02 2.71 16 8 C -0.03 -1.50 4.99 84.86 0.42 -1.07 16 9 N -0.92 -52.97 11.37 21.65 0.25 -52.72 16 10 Si 0.94 45.66 29.60 68.60 2.03 47.69 16 11 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 14 C 0.18 6.60 5.84 85.63 0.50 7.10 16 15 C -0.06 -2.13 5.37 -19.85 -0.11 -2.24 16 16 C -0.10 -3.21 9.70 22.26 0.22 -2.99 16 17 C -0.12 -3.15 9.98 22.36 0.22 -2.92 16 18 C 0.06 1.67 6.71 22.53 0.15 1.82 16 19 O -0.50 -12.08 13.37 -93.09 -1.24 -13.32 16 20 C 0.05 1.60 7.31 22.45 0.16 1.76 16 21 F -0.15 -4.48 17.11 44.97 0.77 -3.71 16 22 C -0.14 -4.24 7.80 22.30 0.17 -4.07 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.04 1.57 5.73 -2.39 -0.01 1.56 16 28 H 0.07 3.76 5.46 -2.39 -0.01 3.75 16 29 H 0.06 2.30 7.86 -2.39 -0.02 2.29 16 30 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 32 H 0.07 2.22 7.76 -2.39 -0.02 2.20 16 33 H 0.13 4.11 8.05 -2.91 -0.02 4.09 16 34 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.41 5.42 9.06 -74.06 -0.67 4.75 16 36 H 0.14 4.02 7.78 -2.91 -0.02 3.99 16 Total: -1.00 -64.83 311.63 3.71 -61.12 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.43 Total: 11.12 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 4.70 Total: -2.55 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -1.45 Total: -81.35 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -2.76 Total: -32.33 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.77 Total: -3.71 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -64.83 3.71 -61.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262372167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.352 kcal (2) G-P(sol) polarization free energy of solvation -64.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds