Wall clock time and date at job start Mon Mar 30 2020 00:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47324 * 2 1 4 4 C 1.50704 * 109.47275 * 239.99628 * 2 1 3 5 5 H 1.07998 * 119.99848 * 265.11229 * 4 2 1 6 6 C 1.37870 * 119.99730 * 85.11408 * 4 2 1 7 7 N 1.31512 * 119.99981 * 185.00862 * 6 4 2 8 8 Si 1.86808 * 120.00235 * 5.01303 * 6 4 2 9 9 H 1.48500 * 109.46974 * 94.94417 * 8 6 4 10 10 H 1.48500 * 109.46779 * 214.94248 * 8 6 4 11 11 H 1.48497 * 109.46877 * 334.93996 * 8 6 4 12 12 C 1.50697 * 109.46950 * 119.99557 * 2 1 3 13 13 O 1.21291 * 120.00244 * 120.00110 * 12 2 1 14 14 N 1.34781 * 120.00503 * 300.00132 * 12 2 1 15 15 C 1.39603 * 120.00448 * 184.48879 * 14 12 2 16 16 C 1.37821 * 120.30195 * 325.24396 * 15 14 12 17 17 C 1.39157 * 120.75588 * 179.97438 * 16 15 14 18 18 C 1.36166 * 121.08661 * 0.05943 * 17 16 15 19 19 C 1.40520 * 119.94781 * 359.95988 * 18 17 16 20 20 C 1.40570 * 121.21130 * 180.02562 * 19 18 17 21 21 C 1.36101 * 119.66071 * 179.91336 * 20 19 18 22 22 C 1.39348 * 120.98314 * 0.08301 * 21 20 19 23 23 C 1.36155 * 120.95549 * 359.93649 * 22 21 20 24 24 C 1.40374 * 119.66752 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.46969 * 185.00846 * 1 2 3 26 26 H 1.08997 * 109.47536 * 305.00994 * 1 2 3 27 27 H 1.09003 * 109.46821 * 65.00990 * 1 2 3 28 28 H 0.97008 * 120.00259 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99475 * 4.49073 * 14 12 2 30 30 H 1.08002 * 119.62373 * 359.97438 * 16 15 14 31 31 H 1.08006 * 119.46374 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.03058 * 180.23660 * 18 17 16 33 33 H 1.08001 * 120.17495 * 359.95909 * 20 19 18 34 34 H 1.08006 * 119.50785 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.51945 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.16352 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.2875 -1.7588 -1.1823 6 6 2.1663 -0.0222 -2.4175 7 7 2.5098 -0.6624 -3.5137 8 14 1.8598 1.8199 -2.4688 9 1 3.1490 2.5406 -2.3143 10 1 1.2426 2.1829 -3.7698 11 1 0.9443 2.2003 -1.3633 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4547 15 6 2.2473 -0.8505 3.5930 16 6 2.4836 -2.2081 3.6173 17 6 3.0227 -2.8165 4.7467 18 6 3.3301 -2.0908 5.8571 19 6 3.1042 -0.7040 5.8736 20 6 3.4122 0.0708 7.0053 21 6 3.1821 1.4121 6.9862 22 6 2.6430 2.0315 5.8603 23 6 2.3323 1.3124 4.7467 24 6 2.5565 -0.0732 4.7294 25 1 -0.3633 -1.0238 0.0897 26 1 -0.3634 0.5896 0.8417 27 1 -0.3633 0.4342 -0.9315 28 1 2.6037 -0.1781 -4.3490 29 1 1.0967 0.4989 2.5447 30 1 2.2477 -2.8066 2.7498 31 1 3.1997 -3.8819 4.7428 32 1 3.7513 -2.5800 6.7230 33 1 3.8299 -0.3956 7.8853 34 1 3.4200 2.0051 7.8569 35 1 2.4698 3.0974 5.8711 36 1 1.9154 1.8056 3.8810 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264100186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:25 Heat of formation + Delta-G solvation = 5.563444 kcal Electronic energy + Delta-G solvation = -19653.891756 eV Core-core repulsion = 16681.593672 eV Total energy + Delta-G solvation = -2972.298084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67847 -39.01157 -36.28955 -34.61951 -33.82577 -31.74365 -30.95959 -30.21903 -28.37587 -25.29425 -23.82405 -23.11033 -22.90549 -21.12694 -19.49546 -17.88794 -17.37990 -17.04232 -16.10244 -15.86556 -15.45715 -14.66541 -14.41358 -13.88594 -13.81689 -13.64199 -13.35814 -13.27212 -12.69672 -12.62086 -12.28357 -11.98793 -11.62293 -11.33149 -11.16479 -11.08411 -10.94978 -10.71902 -10.50537 -10.27315 -9.83366 -9.23418 -9.09592 -8.84879 -8.62108 -8.51606 -7.36863 -6.12165 -4.12685 0.59927 1.08344 2.07342 3.05244 3.19193 3.26582 3.30331 3.43604 3.53619 4.21073 4.33164 4.66843 4.83080 4.89043 5.05290 5.16824 5.21317 5.35640 5.40881 5.46854 5.67462 5.81689 5.95987 5.99118 6.05659 6.18914 6.28448 6.37163 6.41303 6.45350 6.57454 6.62404 6.75683 6.76778 6.92534 7.09125 7.25255 7.45604 7.88772 8.44995 8.86781 9.04591 9.46449 11.00672 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.005014 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.664378 B = 5582.518711 C = 6270.036644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.001 4.001 3 H 0.057 0.943 4 C -0.503 4.503 5 H 0.090 0.910 6 C 0.074 3.926 7 N -0.892 5.892 8 Si 0.867 3.133 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.260 1.260 12 C 0.521 3.479 13 O -0.505 6.505 14 N -0.686 5.686 15 C 0.170 3.830 16 C -0.135 4.135 17 C -0.085 4.085 18 C -0.143 4.143 19 C -0.034 4.034 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.099 4.099 24 C -0.071 4.071 25 H 0.051 0.949 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 4.270 20.256 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 H 0.075 0.925 4 C -0.541 4.541 5 H 0.108 0.892 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.694 3.306 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.184 1.184 12 C 0.311 3.689 13 O -0.376 6.376 14 N -0.331 5.331 15 C 0.074 3.926 16 C -0.156 4.156 17 C -0.103 4.103 18 C -0.162 4.162 19 C -0.034 4.034 20 C -0.128 4.128 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.117 4.117 24 C -0.073 4.073 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.241 0.759 30 H 0.161 0.839 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.522 3.594 19.826 20.207 hybrid contribution -0.319 1.458 -0.158 1.501 sum -1.841 5.052 19.668 20.390 Atomic orbital electron populations 1.22037 0.96631 1.00764 1.00081 1.19364 0.94072 0.97188 0.91670 0.92524 1.20767 1.43795 0.99073 0.90462 0.89248 1.24977 0.94533 0.97887 0.95436 1.69886 1.47458 1.35981 0.99589 0.87020 0.78989 0.86582 0.78000 1.20277 1.21013 1.18437 1.21941 0.78786 0.84646 0.83528 1.90585 1.35911 1.25219 1.85920 1.44034 1.47869 1.36484 1.04718 1.17821 0.96758 0.91679 0.86387 1.21329 1.01632 0.93227 0.99383 1.20756 0.97096 1.00013 0.92467 1.20861 1.03581 0.92676 0.99060 1.17880 0.98535 0.93816 0.93192 1.20980 1.00437 0.94040 0.97345 1.20801 0.99589 0.94923 0.98264 1.20758 1.00365 0.99898 0.93453 1.20903 0.99620 0.92792 0.98417 1.17925 1.01932 0.93449 0.94009 0.92937 0.95476 0.92158 0.92471 0.75872 0.83852 0.85848 0.85910 0.85724 0.86259 0.86146 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.61 37.16 0.32 -2.32 16 2 C 0.00 -0.03 2.18 -92.92 -0.20 -0.23 16 3 H 0.06 1.23 5.72 -51.93 -0.30 0.94 16 4 C -0.50 -14.10 8.52 -34.44 -0.29 -14.39 16 5 H 0.09 2.86 7.34 -52.49 -0.39 2.47 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 8 Si 0.87 20.29 26.35 -169.99 -4.48 15.82 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.26 -5.50 5.97 56.52 0.34 -5.16 16 12 C 0.52 11.21 6.99 -10.98 -0.08 11.13 16 13 O -0.50 -12.63 13.05 5.55 0.07 -12.56 16 14 N -0.69 -11.65 4.91 -9.64 -0.05 -11.70 16 15 C 0.17 2.84 6.32 -83.39 -0.53 2.32 16 16 C -0.13 -2.28 8.68 -39.39 -0.34 -2.62 16 17 C -0.08 -1.17 9.94 -39.99 -0.40 -1.57 16 18 C -0.14 -1.80 9.75 -39.47 -0.38 -2.18 16 19 C -0.03 -0.45 5.74 -106.85 -0.61 -1.07 16 20 C -0.11 -1.21 9.77 -39.47 -0.39 -1.59 16 21 C -0.12 -1.20 9.95 -39.94 -0.40 -1.60 16 22 C -0.13 -1.38 9.95 -39.92 -0.40 -1.77 16 23 C -0.10 -1.27 9.46 -39.53 -0.37 -1.64 16 24 C -0.07 -1.06 5.75 -106.70 -0.61 -1.67 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.41 7.61 -51.93 -0.40 0.01 16 27 H 0.06 1.20 6.90 -51.93 -0.36 0.84 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.41 5.60 7.02 -40.82 -0.29 5.31 16 30 H 0.14 2.72 6.17 -52.49 -0.32 2.40 16 31 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.39 6.90 -52.49 -0.36 1.03 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -32.64 299.92 -8.09 -40.73 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.14 Total: 6.67 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -4.78 Total: -17.23 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.73 Total: -37.96 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.56 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.48 Total: 15.82 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.64 -8.09 -40.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264100186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.295 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds