Wall clock time and date at job start Mon Mar 30 2020 00:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47324 * 2 1 4 4 C 1.50704 * 109.47275 * 239.99628 * 2 1 3 5 5 H 1.07998 * 119.99848 * 265.11229 * 4 2 1 6 6 C 1.37870 * 119.99730 * 85.11408 * 4 2 1 7 7 N 1.31512 * 119.99981 * 185.00862 * 6 4 2 8 8 Si 1.86808 * 120.00235 * 5.01303 * 6 4 2 9 9 H 1.48500 * 109.46974 * 94.94417 * 8 6 4 10 10 H 1.48500 * 109.46779 * 214.94248 * 8 6 4 11 11 H 1.48497 * 109.46877 * 334.93996 * 8 6 4 12 12 C 1.50697 * 109.46950 * 119.99557 * 2 1 3 13 13 O 1.21291 * 120.00244 * 120.00110 * 12 2 1 14 14 N 1.34781 * 120.00503 * 300.00132 * 12 2 1 15 15 C 1.39603 * 120.00448 * 184.48879 * 14 12 2 16 16 C 1.37821 * 120.30195 * 325.24396 * 15 14 12 17 17 C 1.39157 * 120.75588 * 179.97438 * 16 15 14 18 18 C 1.36166 * 121.08661 * 0.05943 * 17 16 15 19 19 C 1.40520 * 119.94781 * 359.95988 * 18 17 16 20 20 C 1.40570 * 121.21130 * 180.02562 * 19 18 17 21 21 C 1.36101 * 119.66071 * 179.91336 * 20 19 18 22 22 C 1.39348 * 120.98314 * 0.08301 * 21 20 19 23 23 C 1.36155 * 120.95549 * 359.93649 * 22 21 20 24 24 C 1.40374 * 119.66752 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.46969 * 185.00846 * 1 2 3 26 26 H 1.08997 * 109.47536 * 305.00994 * 1 2 3 27 27 H 1.09003 * 109.46821 * 65.00990 * 1 2 3 28 28 H 0.97008 * 120.00259 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99475 * 4.49073 * 14 12 2 30 30 H 1.08002 * 119.62373 * 359.97438 * 16 15 14 31 31 H 1.08006 * 119.46374 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.03058 * 180.23660 * 18 17 16 33 33 H 1.08001 * 120.17495 * 359.95909 * 20 19 18 34 34 H 1.08006 * 119.50785 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.51945 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.16352 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.2875 -1.7588 -1.1823 6 6 2.1663 -0.0222 -2.4175 7 7 2.5098 -0.6624 -3.5137 8 14 1.8598 1.8199 -2.4688 9 1 3.1490 2.5406 -2.3143 10 1 1.2426 2.1829 -3.7698 11 1 0.9443 2.2003 -1.3633 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4547 15 6 2.2473 -0.8505 3.5930 16 6 2.4836 -2.2081 3.6173 17 6 3.0227 -2.8165 4.7467 18 6 3.3301 -2.0908 5.8571 19 6 3.1042 -0.7040 5.8736 20 6 3.4122 0.0708 7.0053 21 6 3.1821 1.4121 6.9862 22 6 2.6430 2.0315 5.8603 23 6 2.3323 1.3124 4.7467 24 6 2.5565 -0.0732 4.7294 25 1 -0.3633 -1.0238 0.0897 26 1 -0.3634 0.5896 0.8417 27 1 -0.3633 0.4342 -0.9315 28 1 2.6037 -0.1781 -4.3490 29 1 1.0967 0.4989 2.5447 30 1 2.2477 -2.8066 2.7498 31 1 3.1997 -3.8819 4.7428 32 1 3.7513 -2.5800 6.7230 33 1 3.8299 -0.3956 7.8853 34 1 3.4200 2.0051 7.8569 35 1 2.4698 3.0974 5.8711 36 1 1.9154 1.8056 3.8810 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264100186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:25 Heat of formation + Delta-G solvation = -15.334053 kcal Electronic energy + Delta-G solvation = -19654.797940 eV Core-core repulsion = 16681.593672 eV Total energy + Delta-G solvation = -2973.204267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.88598 -40.40079 -37.37027 -35.97156 -35.73796 -33.51260 -32.24532 -31.20246 -29.49464 -27.23093 -25.27620 -24.16401 -24.01187 -22.41653 -21.01710 -19.22094 -18.93261 -18.50040 -17.40710 -17.11511 -16.74105 -16.20313 -15.99131 -15.25308 -15.01228 -14.79768 -14.64323 -14.43502 -14.33233 -14.03600 -13.63218 -13.24743 -13.01095 -12.96306 -12.57801 -12.42474 -12.24596 -12.01992 -11.88576 -11.68105 -11.47896 -11.27113 -10.77107 -10.51086 -10.21905 -9.54486 -8.47933 -8.28771 -6.36692 -0.39666 0.08560 1.02762 1.36233 1.38460 1.49878 1.74356 2.08732 2.20552 2.35046 3.06548 3.19307 3.76506 3.87898 3.96069 4.03455 4.15552 4.34370 4.37163 4.43340 4.52349 4.57863 4.66508 4.73126 4.79280 4.96822 5.05955 5.09089 5.23024 5.36843 5.44317 5.47092 5.54148 5.56445 5.61502 5.67802 5.97325 6.13312 6.21535 6.52758 6.76796 7.22051 7.32940 8.88944 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.005014 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.664378 B = 5582.518711 C = 6270.036644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.003 4.003 3 H 0.076 0.924 4 C -0.515 4.515 5 H 0.025 0.975 6 C 0.009 3.991 7 N -0.951 5.951 8 Si 0.943 3.057 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.214 1.214 12 C 0.521 3.479 13 O -0.556 6.556 14 N -0.664 5.664 15 C 0.139 3.861 16 C -0.156 4.156 17 C -0.105 4.105 18 C -0.123 4.123 19 C -0.055 4.055 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.082 4.082 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.268 0.732 29 H 0.422 0.578 30 H 0.108 0.892 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 7.961 24.243 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.025 4.025 3 H 0.094 0.906 4 C -0.553 4.553 5 H 0.043 0.957 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.765 3.235 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.136 1.136 12 C 0.311 3.689 13 O -0.432 6.432 14 N -0.310 5.310 15 C 0.044 3.956 16 C -0.177 4.177 17 C -0.124 4.124 18 C -0.141 4.141 19 C -0.056 4.056 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.133 4.133 23 C -0.143 4.143 24 C -0.084 4.084 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.261 0.739 30 H 0.126 0.874 31 H 0.158 0.842 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.146 7.302 23.888 25.071 hybrid contribution -0.066 0.246 -1.203 1.230 sum -2.211 7.549 22.684 24.009 Atomic orbital electron populations 1.21928 0.93628 1.01228 1.02198 1.19328 0.96271 0.97189 0.89688 0.90584 1.20900 1.44075 0.96875 0.93476 0.95673 1.26037 0.94001 1.04349 0.94416 1.70080 1.49572 1.38752 1.00607 0.85825 0.79842 0.78322 0.79556 1.19969 1.20830 1.13590 1.21710 0.78332 0.84038 0.84825 1.90578 1.38426 1.27400 1.86805 1.43539 1.47569 1.36366 1.03563 1.17981 0.98724 0.91892 0.86987 1.21270 1.03198 0.93719 0.99527 1.20912 0.98085 1.01145 0.92247 1.21281 1.01082 0.92570 0.99198 1.18277 0.98939 0.94529 0.93847 1.21351 0.99670 0.94444 0.97229 1.21274 0.98021 0.94980 0.99080 1.21196 0.98110 1.01301 0.92650 1.21092 1.01183 0.92040 0.99940 1.18097 1.02300 0.94473 0.93541 0.94100 0.90368 0.92267 0.92344 0.73943 0.87384 0.84191 0.82298 0.82656 0.82781 0.83278 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.61 71.98 0.62 -4.26 16 2 C 0.00 -0.14 2.18 -12.29 -0.03 -0.17 16 3 H 0.08 3.14 5.72 -2.39 -0.01 3.12 16 4 C -0.52 -30.47 8.52 25.60 0.22 -30.25 16 5 H 0.02 1.76 7.34 -2.91 -0.02 1.73 16 6 C 0.01 0.51 5.47 84.65 0.46 0.97 16 7 N -0.95 -60.68 13.96 21.44 0.30 -60.38 16 8 Si 0.94 41.50 26.35 68.60 1.81 43.30 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.21 -7.78 5.97 99.48 0.59 -7.19 16 12 C 0.52 23.28 6.99 87.66 0.61 23.89 16 13 O -0.56 -30.20 13.05 -3.06 -0.04 -30.24 16 14 N -0.66 -22.64 4.91 -302.81 -1.49 -24.13 16 15 C 0.14 4.75 6.32 38.51 0.24 4.99 16 16 C -0.16 -5.62 8.68 22.39 0.19 -5.43 16 17 C -0.11 -2.96 9.94 22.01 0.22 -2.74 16 18 C -0.12 -2.84 9.75 22.34 0.22 -2.62 16 19 C -0.06 -1.35 5.74 -21.31 -0.12 -1.47 16 20 C -0.11 -1.91 9.77 22.34 0.22 -1.69 16 21 C -0.12 -1.76 9.95 22.04 0.22 -1.54 16 22 C -0.11 -1.98 9.95 22.05 0.22 -1.76 16 23 C -0.12 -2.83 9.46 22.30 0.21 -2.62 16 24 C -0.08 -2.32 5.75 -21.21 -0.12 -2.45 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 2.09 7.61 -2.39 -0.02 2.07 16 27 H 0.06 2.20 6.90 -2.39 -0.02 2.19 16 28 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 29 H 0.42 10.94 7.02 -92.71 -0.65 10.29 16 30 H 0.11 4.59 6.17 -2.91 -0.02 4.58 16 31 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.13 2.62 6.90 -2.91 -0.02 2.60 16 Total: -1.00 -79.41 299.92 4.31 -75.10 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.34 Total: 23.48 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 3.38 Total: -27.14 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -1.19 Total: -84.51 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.04 Total: -30.24 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.81 Total: 43.30 kcal Total: -79.41 4.31 -75.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264100186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.766 kcal (2) G-P(sol) polarization free energy of solvation -79.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds