Wall clock time and date at job start Mon Mar 30 2020 01:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38223 * 119.94742 * 2 1 4 4 N 1.32243 * 120.19070 * 179.97438 * 3 2 1 5 5 C 1.31951 * 120.08719 * 0.02935 * 4 3 2 6 6 C 1.50693 * 120.05268 * 180.02562 * 5 4 3 7 7 C 1.39284 * 119.89494 * 0.26518 * 5 4 3 8 8 N 1.39085 * 120.09758 * 179.71075 * 7 5 4 9 9 C 1.39756 * 120.00148 * 174.80389 * 8 7 5 10 10 C 1.39331 * 119.95739 * 325.96526 * 9 8 7 11 11 C 1.38476 * 120.43137 * 179.76632 * 10 9 8 12 12 C 1.37692 * 120.32133 * 0.51282 * 11 10 9 13 13 C 1.40752 * 119.89255 * 359.74494 * 12 11 10 14 14 C 1.41410 * 120.20813 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99692 * 25.17946 * 14 13 12 16 16 C 1.39930 * 120.00247 * 205.16786 * 14 13 12 17 17 N 1.30828 * 119.99804 * 16.76473 * 16 14 13 18 18 Si 1.86799 * 120.00052 * 196.76073 * 16 14 13 19 19 H 1.48498 * 109.47059 * 60.00255 * 18 16 14 20 20 H 1.48503 * 109.47142 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47131 * 300.00569 * 18 16 14 22 22 C 1.38291 * 119.94876 * 146.24633 * 9 8 7 23 23 N 1.32209 * 119.95312 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47148 * 90.00364 * 1 2 3 25 25 H 1.09002 * 109.46966 * 209.99800 * 1 2 3 26 26 H 1.08998 * 109.47478 * 329.99923 * 1 2 3 27 27 H 1.08000 * 119.90650 * 0.02562 * 3 2 1 28 28 H 1.08995 * 109.47933 * 89.99472 * 6 5 4 29 29 H 1.09003 * 109.47211 * 209.99747 * 6 5 4 30 30 H 1.09004 * 109.47451 * 329.98937 * 6 5 4 31 31 H 0.97002 * 119.99474 * 354.80057 * 8 7 5 32 32 H 1.08007 * 119.78689 * 0.02562 * 10 9 8 33 33 H 1.07999 * 119.84427 * 180.26280 * 11 10 9 34 34 H 1.08001 * 120.05446 * 179.76844 * 12 11 10 35 35 H 0.97003 * 119.99771 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.16483 * 359.94987 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1977 0.0000 4 7 3.5194 1.2033 0.0005 5 6 4.1857 0.0644 0.0004 6 6 5.6926 0.0717 0.0016 7 6 3.4940 -1.1446 -0.0058 8 7 4.1922 -2.3475 -0.0119 9 6 3.5004 -3.5574 0.0915 10 6 2.3433 -3.6335 0.8638 11 6 1.6475 -4.8262 0.9692 12 6 2.0981 -5.9535 0.3197 13 6 3.2685 -5.8934 -0.4599 14 6 3.7369 -7.0470 -1.1303 15 1 3.0472 -7.8343 -1.3963 16 6 5.0940 -7.1683 -1.4492 17 7 5.9755 -6.4024 -0.8594 18 14 5.6468 -8.4240 -2.7169 19 1 4.9970 -8.1312 -4.0197 20 1 7.1221 -8.3539 -2.8723 21 1 5.2610 -9.7853 -2.2662 22 6 3.9687 -4.6790 -0.5683 23 7 2.1670 -1.1455 0.0005 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6546 2.1316 0.0004 28 1 6.0553 0.0730 1.0295 29 1 6.0607 -0.8163 -0.5124 30 1 6.0521 0.9636 -0.5117 31 1 5.1592 -2.3466 -0.0881 32 1 1.9843 -2.7556 1.3803 33 1 0.7493 -4.8734 1.5671 34 1 1.5541 -6.8824 0.4079 35 1 6.9163 -6.4868 -1.0803 36 1 4.8676 -4.6222 -1.1643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307121755.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:58 Heat of formation + Delta-G solvation = 67.171483 kcal Electronic energy + Delta-G solvation = -19619.718290 eV Core-core repulsion = 16682.384483 eV Total energy + Delta-G solvation = -2937.333808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.92013 -37.97514 -35.56612 -34.60907 -33.47181 -31.46877 -30.17044 -29.52303 -28.00692 -25.55033 -25.25556 -23.57431 -21.96666 -20.87171 -20.31561 -17.87630 -17.44133 -16.42176 -15.70196 -15.58239 -15.14276 -14.65960 -14.57189 -13.51301 -13.39353 -13.29572 -12.83595 -12.70064 -12.47637 -12.34666 -12.24386 -12.07676 -11.77905 -11.52329 -11.21035 -11.11781 -10.89807 -10.58239 -10.51192 -9.95137 -9.78909 -9.48885 -9.17278 -8.63309 -8.13208 -7.38411 -6.87386 -6.56337 -4.38100 1.17294 1.57328 2.80601 2.99627 3.05199 3.08434 3.24103 3.52042 3.92291 4.03193 4.43072 4.55244 4.64049 4.75677 5.12630 5.37225 5.39709 5.61821 5.63194 5.68452 5.70855 5.77556 6.00664 6.12458 6.22555 6.53509 6.63452 6.77805 6.96798 7.04693 7.16402 7.23487 7.47896 7.69985 7.80865 7.92350 8.02921 8.10903 8.30974 8.45341 8.64064 8.88327 8.94412 10.18266 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024106 B = 0.005091 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.237992 B = 5498.912512 C = 6292.686671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.122 3.878 3 C -0.032 4.032 4 N -0.406 5.406 5 C 0.002 3.998 6 C -0.091 4.091 7 C 0.368 3.632 8 N -0.641 5.641 9 C 0.153 3.847 10 C -0.220 4.220 11 C -0.086 4.086 12 C -0.230 4.230 13 C 0.122 3.878 14 C -0.464 4.464 15 H 0.078 0.922 16 C 0.077 3.923 17 N -0.800 5.800 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.185 4.185 23 N -0.475 5.475 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.413 0.587 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.279 0.721 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 10.411 0.621 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.021 4.021 3 C -0.193 4.193 4 N -0.119 5.119 5 C -0.147 4.147 6 C -0.149 4.149 7 C 0.128 3.872 8 N -0.265 5.265 9 C 0.060 3.940 10 C -0.242 4.242 11 C -0.105 4.105 12 C -0.250 4.250 13 C 0.119 3.881 14 C -0.494 4.494 15 H 0.096 0.904 16 C -0.140 4.140 17 N -0.426 5.426 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.206 4.206 23 N -0.198 5.198 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.175 0.825 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.252 0.748 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.412 10.322 0.654 10.620 hybrid contribution 0.695 -0.600 -0.589 1.091 sum -1.717 9.722 0.065 9.873 Atomic orbital electron populations 1.20659 0.88309 1.03535 1.03213 1.22082 0.97897 0.88790 0.93296 1.23000 0.90386 0.98597 1.07347 1.67958 1.08789 1.28267 1.06922 1.21450 0.97618 0.87873 1.07787 1.20497 0.88422 1.03120 1.02856 1.19220 0.89343 0.87069 0.91572 1.42295 1.08483 1.01631 1.74085 1.17611 0.94467 0.83718 0.98225 1.20246 0.99225 0.97510 1.07202 1.20384 0.97865 0.93041 0.99176 1.21024 1.01919 0.96973 1.05054 1.17330 0.90096 0.91883 0.88799 1.19502 0.93140 1.03522 1.33274 0.90437 1.25863 0.96681 0.96332 0.95082 1.69805 1.02912 1.35362 1.34533 0.86389 0.77721 0.81147 0.81578 1.18903 1.20402 1.19013 1.21048 1.04203 0.91197 1.04200 1.68262 1.06181 1.28617 1.16711 0.90216 0.90141 0.90595 0.82454 0.90648 0.91208 0.90395 0.74814 0.88121 0.89191 0.88959 0.91000 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.19 36.00 0.37 -0.75 16 2 C 0.12 1.87 6.78 -82.44 -0.56 1.31 16 3 C -0.03 -0.46 10.86 -17.38 -0.19 -0.65 16 4 N -0.41 -6.47 10.41 -9.12 -0.09 -6.57 16 5 C 0.00 0.04 6.81 -82.16 -0.56 -0.52 16 6 C -0.09 -1.15 9.81 36.00 0.35 -0.79 16 7 C 0.37 6.83 7.19 -154.63 -1.11 5.72 16 8 N -0.64 -12.52 5.39 -9.92 -0.05 -12.58 16 9 C 0.15 3.54 6.28 -83.82 -0.53 3.02 16 10 C -0.22 -5.07 8.59 -39.09 -0.34 -5.41 16 11 C -0.09 -1.96 10.02 -39.69 -0.40 -2.36 16 12 C -0.23 -5.65 9.79 -38.83 -0.38 -6.03 16 13 C 0.12 3.23 5.57 -106.85 -0.59 2.63 16 14 C -0.46 -12.22 9.05 -37.74 -0.34 -12.56 16 15 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 16 C 0.08 1.91 5.16 -17.35 -0.09 1.82 16 17 N -0.80 -20.15 10.94 55.55 0.61 -19.55 16 18 Si 0.91 18.51 29.59 -169.99 -5.03 13.48 16 19 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 C -0.18 -4.69 8.60 -38.67 -0.33 -5.03 16 23 N -0.48 -8.97 7.22 -8.46 -0.06 -9.03 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.82 6.48 -51.93 -0.34 0.49 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.41 7.10 6.77 -40.82 -0.28 6.83 16 32 H 0.10 2.24 6.29 -52.48 -0.33 1.91 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 36 H 0.12 3.13 6.17 -52.49 -0.32 2.81 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -29.31 306.30 -8.91 -38.22 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -4.19 Total: 11.00 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -4.70 Total: -19.60 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.40 Total: -47.72 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.31 -8.91 -38.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307121755.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.392 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds