Wall clock time and date at job start Mon Mar 30 2020 00:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31517 * 120.00193 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00020 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47177 * 89.99899 * 8 6 4 10 10 H 1.48505 * 109.47036 * 210.00183 * 8 6 4 11 11 H 1.48499 * 109.46776 * 329.99672 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 2 1 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99847 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.46909 * 180.02562 * 15 13 12 17 17 C 1.46415 * 119.53852 * 89.99974 * 16 15 13 18 18 C 1.53042 * 109.51980 * 144.12049 * 17 16 15 19 19 C 1.50800 * 109.18313 * 46.69369 * 18 17 16 20 20 O 1.21233 * 120.01539 * 145.78889 * 19 18 17 21 21 N 1.34563 * 119.96855 * 325.77006 * 19 18 17 22 22 C 1.34287 * 119.53574 * 269.72451 * 16 15 13 23 23 O 1.21544 * 119.20758 * 5.71436 * 22 16 15 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 0.97003 * 120.00055 * 179.97438 * 7 6 4 28 28 H 0.97003 * 119.99624 * 264.99510 * 12 2 1 29 29 H 1.08999 * 109.46659 * 299.99752 * 15 13 12 30 30 H 1.08988 * 109.47257 * 59.99966 * 15 13 12 31 31 H 1.08999 * 109.45962 * 264.13728 * 17 16 15 32 32 H 1.08999 * 109.45852 * 24.10870 * 17 16 15 33 33 H 1.08997 * 109.51956 * 166.61162 * 18 17 16 34 34 H 1.09004 * 109.51683 * 286.78533 * 18 17 16 35 35 H 0.97005 * 119.50464 * 184.41013 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 2.1373 -0.8597 3.5565 8 14 0.6247 1.2789 2.6541 9 1 -0.8028 0.8724 2.6998 10 1 0.9758 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6499 -0.7284 -3.5876 16 7 2.6995 0.2132 -4.7088 17 6 3.9203 0.9847 -4.9500 18 6 4.1291 1.1539 -6.4566 19 6 2.8293 1.5787 -7.0924 20 8 2.8365 2.3322 -8.0420 21 7 1.6615 1.1206 -6.6053 22 6 1.6267 0.3524 -5.5044 23 8 0.5973 -0.2272 -5.2187 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9033 -0.5281 4.4375 28 1 2.2491 -1.6317 -1.1527 29 1 3.6492 -1.1201 -3.3980 30 1 1.9777 -1.5506 -3.8326 31 1 3.8280 1.9656 -4.4836 32 1 4.7733 0.4580 -4.5220 33 1 4.8882 1.9152 -6.6359 34 1 4.4531 0.2067 -6.8880 35 1 0.8338 1.3461 -7.0580 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318437085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:31 Heat of formation + Delta-G solvation = -87.029817 kcal Electronic energy + Delta-G solvation = -20793.902485 eV Core-core repulsion = 17406.739993 eV Total energy + Delta-G solvation = -3387.162492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.81477 -39.46834 -38.65036 -36.38040 -35.13227 -34.63030 -32.46586 -31.76918 -30.14390 -27.45040 -25.28292 -25.18800 -23.31030 -21.52351 -19.80986 -19.23277 -18.50249 -17.93582 -17.51541 -16.66929 -16.06055 -15.92823 -15.30915 -14.94373 -14.83539 -14.58661 -14.43074 -14.02402 -13.56482 -13.08002 -12.97762 -12.77250 -12.30900 -12.20158 -11.88750 -11.75109 -11.21578 -10.87219 -10.82986 -10.46966 -10.39532 -10.20656 -9.88456 -9.60764 -9.25634 -8.80687 -8.75722 -8.20281 -6.23772 -4.26492 1.51845 2.11857 2.81354 3.04025 3.13431 3.22919 3.34136 3.38712 3.89196 4.09945 4.23925 4.29714 4.59037 4.72944 5.01934 5.09433 5.11979 5.25369 5.31244 5.45484 5.76467 5.91431 6.25980 6.31085 6.38934 6.56586 6.85325 7.15541 7.17183 7.24876 7.29137 7.48974 7.97840 8.11030 8.47660 8.71945 8.86725 9.37306 10.88264 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039037 B = 0.004205 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.092181 B = 6656.916027 C = 6750.603823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.238 3.762 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.699 5.699 13 C 0.487 3.513 14 O -0.547 6.547 15 C 0.108 3.892 16 N -0.596 5.596 17 C 0.109 3.891 18 C -0.157 4.157 19 C 0.525 3.475 20 O -0.508 6.508 21 N -0.674 5.674 22 C 0.713 3.287 23 O -0.550 6.550 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.267 0.733 28 H 0.396 0.604 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -0.043 -18.054 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.135 3.865 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.348 5.348 13 C 0.270 3.730 14 O -0.425 6.425 15 C -0.018 4.018 16 N -0.333 5.333 17 C -0.014 4.014 18 C -0.197 4.197 19 C 0.313 3.687 20 O -0.381 6.381 21 N -0.343 5.343 22 C 0.415 3.585 23 O -0.424 6.424 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.229 0.771 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.921 0.839 -18.115 18.790 hybrid contribution -0.870 0.418 0.198 0.985 sum 4.051 1.257 -17.917 18.412 Atomic orbital electron populations 1.22444 0.99266 1.00931 0.99278 1.19096 0.90179 0.94575 0.82688 0.93467 1.21030 1.33334 1.14446 0.88516 0.90130 1.24819 0.95432 0.96685 0.95534 1.69866 1.44912 1.40074 0.98059 0.86877 0.80634 0.83591 0.77370 1.20282 1.22164 1.18767 1.46149 1.65100 1.13839 1.09694 1.20860 0.79124 0.88002 0.84999 1.90660 1.50873 1.16102 1.84902 1.21426 1.04400 0.91697 0.84325 1.46503 1.13309 1.44490 1.28961 1.21696 0.87377 0.98313 0.94011 1.22276 0.95361 1.06022 0.96047 1.20990 0.86053 0.78738 0.82952 1.90785 1.87536 1.32704 1.27092 1.44238 1.11968 1.50423 1.27664 1.15500 0.83989 0.79538 0.79510 1.91018 1.29382 1.48846 1.73135 0.93538 0.94539 0.92760 0.92262 0.77068 0.86900 0.86659 0.89892 0.87722 0.85542 0.86759 0.73332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.96 37.16 0.33 -3.32 16 2 C 0.24 5.56 2.15 -69.08 -0.15 5.41 16 3 H 0.05 1.22 6.64 -51.93 -0.34 0.88 16 4 C -0.54 -14.10 9.31 -34.45 -0.32 -14.42 16 5 H 0.08 2.20 7.98 -52.49 -0.42 1.79 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.02 13.96 55.43 0.77 -25.24 16 8 Si 0.89 21.68 24.37 -169.99 -4.14 17.53 16 9 H -0.28 -6.59 6.87 56.52 0.39 -6.21 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 12 N -0.70 -13.02 5.07 -54.93 -0.28 -13.30 16 13 C 0.49 8.50 7.86 -10.99 -0.09 8.41 16 14 O -0.55 -11.83 16.09 5.56 0.09 -11.74 16 15 C 0.11 1.25 5.82 -5.19 -0.03 1.22 16 16 N -0.60 -6.82 2.28 -181.17 -0.41 -7.23 16 17 C 0.11 0.84 6.64 -4.07 -0.03 0.82 16 18 C -0.16 -0.96 6.28 -27.81 -0.17 -1.14 16 19 C 0.52 5.33 7.76 -11.03 -0.09 5.24 16 20 O -0.51 -6.65 17.93 5.60 0.10 -6.55 16 21 N -0.67 -7.50 5.18 -16.03 -0.08 -7.59 16 22 C 0.71 9.62 8.21 -87.79 -0.72 8.90 16 23 O -0.55 -9.44 16.66 5.33 0.09 -9.35 16 24 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 28 H 0.40 6.24 8.54 -40.82 -0.35 5.89 16 29 H 0.11 0.84 7.82 -51.93 -0.41 0.43 16 30 H 0.12 1.28 7.43 -51.94 -0.39 0.90 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.51 7.79 -51.93 -0.40 0.10 16 33 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.43 4.35 8.86 -40.82 -0.36 3.99 16 LS Contribution 297.83 15.07 4.49 4.49 Total: -1.00 -36.37 297.83 -4.87 -41.24 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.13 Total: 4.52 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -1.36 Total: 13.22 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.00 Total: -53.36 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: 0.28 Total: -27.64 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.37 -4.87 -41.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318437085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.790 kcal (2) G-P(sol) polarization free energy of solvation -36.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds